Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99553 * 2 1 4 4 H 1.48496 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47479 * 300.00136 * 3 2 1 6 6 H 1.48497 * 109.47205 * 60.00306 * 3 2 1 7 7 C 1.37870 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47550 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47442 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47308 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00176 * 179.97438 * 12 11 10 14 14 O 1.21584 * 119.99597 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99892 * 179.97438 * 13 12 11 16 16 C 1.46608 * 125.25547 * 0.02562 * 15 13 12 17 17 C 1.53235 * 107.25059 * 196.73103 * 16 15 13 18 18 H 1.09002 * 111.55037 * 215.33973 * 17 16 15 19 19 C 1.50691 * 111.91994 * 89.56927 * 17 16 15 20 20 O 1.20823 * 125.07514 * 68.65326 * 19 17 16 21 21 O 1.34200 * 109.80656 * 249.95521 * 19 17 16 22 22 C 1.45788 * 109.62806 * 338.07820 * 21 19 17 23 23 C 1.54908 * 104.53859 * 31.71320 * 22 21 19 24 24 H 1.09002 * 114.48001 * 209.49797 * 23 22 21 25 25 C 1.46415 * 125.25421 * 179.97438 * 15 13 12 26 26 H 0.97004 * 120.00476 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46738 * 60.00426 * 9 7 2 28 28 H 1.08997 * 109.47344 * 300.00684 * 9 7 2 29 29 H 1.09008 * 109.46786 * 59.99783 * 10 9 7 30 30 H 1.08997 * 109.47147 * 300.00549 * 10 9 7 31 31 H 1.08995 * 109.47597 * 59.99672 * 11 10 9 32 32 H 1.09003 * 109.46555 * 299.99671 * 11 10 9 33 33 H 0.97006 * 119.99809 * 359.97438 * 12 11 10 34 34 H 1.09003 * 109.88078 * 77.32087 * 16 15 13 35 35 H 1.08998 * 109.88222 * 316.14725 * 16 15 13 36 36 H 1.09000 * 110.42032 * 272.94575 * 22 21 19 37 37 H 1.08999 * 110.42328 * 150.48195 * 22 21 19 38 38 H 1.09003 * 109.69149 * 57.55149 * 25 15 13 39 39 H 1.09002 * 109.63079 * 297.05495 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4325 -6.1005 -0.0006 13 6 1.9833 -7.3713 -0.0005 14 8 0.7880 -7.5934 -0.0004 15 7 2.8593 -8.3957 -0.0004 16 6 4.3191 -8.2608 0.0001 17 6 4.9007 -9.6144 -0.4213 18 1 5.8328 -9.8298 0.1010 19 6 5.0678 -9.7142 -1.9156 20 8 5.8652 -9.0838 -2.5687 21 8 4.1793 -10.5871 -2.4153 22 6 3.7391 -11.4945 -1.3626 23 6 3.7940 -10.6448 -0.0686 24 1 3.9950 -11.2153 0.8382 25 6 2.4998 -9.8150 0.0002 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 2.8721 -3.6042 0.8895 30 1 2.8721 -3.6042 -0.8904 31 1 0.8541 -5.0446 -0.8913 32 1 0.8536 -5.0450 0.8887 33 1 3.3862 -5.9232 -0.0002 34 1 4.6672 -8.0029 1.0003 35 1 4.6205 -7.4905 -0.7098 36 1 4.4152 -12.3462 -1.2874 37 1 2.7204 -11.8322 -1.5530 38 1 1.8755 -10.0362 -0.8655 39 1 1.9575 -10.0550 0.9149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227026320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = -139.233559 kcal Electronic energy + Delta-G solvation = -21876.297958 eV Core-core repulsion = 18396.760034 eV Total energy + Delta-G solvation = -3479.537924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.73929 -40.97559 -38.91709 -37.89000 -36.94356 -35.24143 -33.63884 -32.56005 -31.27755 -28.75759 -27.12017 -25.96937 -24.63179 -22.37209 -22.35705 -21.85572 -21.04061 -19.30946 -18.61976 -18.39850 -17.88157 -17.46805 -17.02476 -16.76559 -16.44651 -15.99662 -15.65865 -15.38299 -14.95081 -14.65232 -14.45658 -14.28242 -13.89869 -13.70671 -13.62879 -13.49789 -12.80535 -12.73994 -12.63027 -12.51639 -12.38497 -12.34028 -11.71113 -11.70422 -11.60352 -11.35326 -11.27964 -11.15907 -10.56700 -10.31877 -9.60822 -8.20151 -6.31646 0.88952 1.41111 1.41681 1.47160 1.55156 1.99716 2.22340 2.41365 2.78179 2.88200 2.95169 3.13676 3.26611 3.62783 3.94029 4.11424 4.18856 4.19349 4.39033 4.42474 4.49894 4.52777 4.62409 4.64718 4.74812 4.92012 4.92975 4.96885 5.13303 5.22272 5.40999 5.51557 5.69356 5.70330 5.83165 5.87609 6.21722 6.30351 6.82177 6.86603 7.37926 7.42495 8.92255 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030562 B = 0.002913 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.957576 B = 9609.231667 C =10175.680398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.149 3.851 12 N -0.730 5.730 13 C 0.714 3.286 14 O -0.633 6.633 15 N -0.637 5.637 16 C 0.109 3.891 17 C -0.149 4.149 18 H 0.180 0.820 19 C 0.485 3.515 20 O -0.498 6.498 21 O -0.370 6.370 22 C 0.051 3.949 23 C -0.102 4.102 24 H 0.183 0.817 25 C 0.114 3.886 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.005 1.005 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.409 0.591 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.059 0.941 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.172 -27.792 3.442 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.139 4.139 11 C 0.025 3.975 12 N -0.385 5.385 13 C 0.416 3.584 14 O -0.514 6.514 15 N -0.375 5.375 16 C -0.013 4.013 17 C -0.169 4.169 18 H 0.198 0.802 19 C 0.327 3.673 20 O -0.384 6.384 21 O -0.287 6.287 22 C -0.022 4.022 23 C -0.120 4.120 24 H 0.201 0.799 25 C -0.009 4.009 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.013 0.987 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.387 -27.504 2.908 30.305 hybrid contribution 0.105 1.368 -0.301 1.405 sum 12.493 -26.136 2.607 29.085 Atomic orbital electron populations 1.70118 1.07934 1.27756 1.51727 1.26025 0.95761 1.03566 0.94769 0.85356 0.79180 0.78593 0.77646 1.18230 1.20656 1.20414 1.21701 0.93740 0.91994 1.50399 0.91580 1.18936 0.94396 0.92836 0.95170 1.21593 0.98493 0.91726 1.02047 1.21120 0.91278 0.84477 1.00651 1.45110 1.10842 1.03611 1.78964 1.15612 0.84136 0.80756 0.77917 1.90898 1.15783 1.84457 1.60262 1.47247 1.06257 1.05805 1.78195 1.21801 0.78956 0.96538 1.04031 1.23132 1.04189 0.96931 0.92608 0.80245 1.23381 0.76416 0.76597 0.90941 1.90716 1.33918 1.44888 1.68908 1.87110 1.54886 1.44777 1.41908 1.24766 1.04591 0.90867 0.82012 1.23735 0.90932 0.95464 1.01868 0.79947 1.22037 0.97722 0.78056 1.03075 0.92784 0.99040 0.98657 0.91097 0.91802 0.93681 0.92905 0.75503 0.86595 0.91395 0.85386 0.85284 0.92303 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.29 21.44 0.28 -57.37 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -4.00 5.27 30.59 0.16 -3.84 16 11 C 0.15 5.54 5.67 86.38 0.49 6.03 16 12 N -0.73 -21.94 5.51 -478.54 -2.64 -24.57 16 13 C 0.71 22.46 8.47 179.05 1.52 23.97 16 14 O -0.63 -25.70 16.65 -3.98 -0.07 -25.77 16 15 N -0.64 -13.32 3.30 -837.55 -2.77 -16.09 16 16 C 0.11 1.46 5.91 86.44 0.51 1.97 16 17 C -0.15 -1.21 3.76 -10.69 -0.04 -1.26 16 18 H 0.18 0.09 8.14 -2.39 -0.02 0.07 16 19 C 0.48 8.97 7.82 71.23 0.56 9.53 16 20 O -0.50 -13.76 18.00 21.64 0.39 -13.37 16 21 O -0.37 -6.43 11.05 -51.46 -0.57 -7.00 16 22 C 0.05 0.24 7.06 72.63 0.51 0.75 16 23 C -0.10 -0.37 4.42 -9.06 -0.04 -0.41 16 24 H 0.18 -0.94 8.14 -2.39 -0.02 -0.96 16 25 C 0.11 1.60 6.37 86.70 0.55 2.15 16 26 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 27 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 28 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.41 9.77 7.07 -92.70 -0.66 9.11 16 34 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.14 7.35 -2.39 -0.02 1.12 16 36 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.13 0.34 7.61 -2.39 -0.02 0.33 16 38 H 0.06 1.03 7.25 -2.39 -0.02 1.02 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -85.42 327.83 2.13 -83.29 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.41 Total: 4.30 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.06 Total: 10.28 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -5.12 Total: -98.03 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.25 Total: -46.14 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -85.42 2.13 -83.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227026320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.948 kcal (2) G-P(sol) polarization free energy of solvation -85.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds