Wall clock time and date at job start Tue Mar 31 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 120.00106 * 2 1 4 4 C 1.38214 * 119.99630 * 179.79154 * 3 2 1 5 5 C 1.38252 * 120.00261 * 0.46197 * 4 3 2 6 6 C 1.38224 * 119.99931 * 359.76871 * 5 4 3 7 7 C 1.38216 * 119.99716 * 180.27639 * 2 1 3 8 8 C 1.50695 * 119.99754 * 359.97438 * 7 2 1 9 9 H 1.08999 * 109.47766 * 34.99589 * 8 7 2 10 10 C 1.53006 * 109.46845 * 274.99824 * 8 7 2 11 11 O 1.42902 * 109.47121 * 155.00288 * 8 7 2 12 12 C 1.35639 * 117.00138 * 202.63792 * 11 8 7 13 13 C 1.38451 * 120.26326 * 2.50679 * 12 11 8 14 14 C 1.38309 * 120.04410 * 179.74526 * 13 12 11 15 15 C 1.38814 * 120.59838 * 0.55164 * 14 13 12 16 16 C 1.36495 * 120.53669 * 359.70145 * 15 14 13 17 17 C 1.40731 * 119.92588 * 0.02562 * 16 15 14 18 18 C 1.41152 * 120.28484 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99662 * 149.30058 * 18 17 16 20 20 C 1.39927 * 120.00449 * 329.30122 * 18 17 16 21 21 N 1.30869 * 120.00522 * 166.52660 * 20 18 17 22 22 Si 1.86806 * 119.99980 * 346.52354 * 20 18 17 23 23 H 1.48498 * 109.46913 * 92.78760 * 22 20 18 24 24 H 1.48496 * 109.46941 * 212.78737 * 22 20 18 25 25 H 1.48501 * 109.46660 * 332.78420 * 22 20 18 26 26 H 1.09002 * 109.46864 * 269.73033 * 1 2 3 27 27 H 1.08994 * 109.47678 * 149.72209 * 1 2 3 28 28 H 1.09005 * 109.47311 * 29.72373 * 1 2 3 29 29 H 1.08000 * 119.99728 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.99479 * 180.25504 * 4 3 2 31 31 H 1.07996 * 120.00182 * 179.79435 * 5 4 3 32 32 H 1.07991 * 119.99864 * 179.97438 * 6 5 4 33 33 H 1.08994 * 109.47199 * 60.00267 * 10 8 7 34 34 H 1.09004 * 109.47148 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47451 * 300.00159 * 10 8 7 36 36 H 1.07997 * 119.97636 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.69709 * 180.27378 * 14 13 12 38 38 H 1.07997 * 119.73720 * 179.72356 * 15 14 13 39 39 H 1.07995 * 120.03629 * 179.97438 * 16 15 14 40 40 H 0.96994 * 120.00255 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1972 0.0044 5 6 4.2717 -0.0001 -0.0009 6 6 3.5805 -1.1971 -0.0058 7 6 2.1980 -1.1970 -0.0058 8 6 1.4444 -2.5020 -0.0115 9 1 0.5335 -2.3930 -0.6000 10 6 1.0811 -2.8873 1.4240 11 8 2.2634 -3.5225 -0.5858 12 6 1.6283 -4.6049 -1.1004 13 6 0.2452 -4.6662 -1.1036 14 6 -0.3978 -5.7698 -1.6343 15 6 0.3315 -6.8290 -2.1569 16 6 1.6960 -6.7961 -2.1613 17 6 2.3732 -5.6817 -1.6323 18 6 3.7841 -5.6395 -1.6335 19 1 4.2959 -4.6918 -1.7131 20 6 4.5196 -6.8255 -1.5314 21 7 5.8017 -6.8251 -1.7943 22 14 3.6717 -8.4094 -1.0199 23 1 3.2312 -9.1483 -2.2304 24 1 4.6190 -9.2498 -0.2443 25 1 2.4908 -8.0891 -0.1783 26 1 -0.3633 -0.0048 1.0277 27 1 -0.3634 -0.8874 -0.5181 28 1 -0.3634 0.8925 -0.5096 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1325 0.0085 31 1 5.3517 -0.0001 -0.0009 32 1 4.1205 -2.1323 -0.0103 33 1 0.4565 -2.1090 1.8621 34 1 0.5364 -3.8315 1.4200 35 1 1.9920 -2.9964 2.0126 36 1 -0.3321 -3.8497 -0.6956 37 1 -1.4771 -5.8097 -1.6379 38 1 -0.1849 -7.6858 -2.5637 39 1 2.2554 -7.6248 -2.5697 40 1 6.3114 -7.6473 -1.7240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:45 Heat of formation + Delta-G solvation = 1.810242 kcal Electronic energy + Delta-G solvation = -21732.277939 eV Core-core repulsion = 18669.705396 eV Total energy + Delta-G solvation = -3062.572543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.86979 -38.59404 -36.45451 -33.55754 -33.24058 -31.90569 -30.47930 -29.09562 -28.79090 -26.81901 -25.02836 -23.76705 -22.18738 -21.40699 -20.42843 -19.87133 -17.59050 -17.03965 -16.44630 -15.49702 -15.06856 -14.69951 -14.55848 -14.28151 -13.95441 -13.76797 -13.68293 -13.20778 -12.95867 -12.52339 -12.43263 -12.30148 -12.14615 -11.90467 -11.84047 -11.54779 -11.42117 -11.01831 -10.86671 -10.70663 -10.50406 -10.25336 -10.08480 -9.66201 -9.56455 -9.11328 -8.59041 -8.44309 -7.70334 -7.14758 -6.86255 -4.34374 1.48313 1.59063 2.56458 2.65647 3.13448 3.24667 3.34741 3.89689 4.02126 4.09086 4.54294 4.89839 4.94037 5.07238 5.22977 5.29960 5.36197 5.41489 5.51897 5.62741 5.65623 5.79297 5.84885 5.91750 5.97090 6.03999 6.10274 6.18590 6.23033 6.31991 6.45574 6.57775 6.62196 6.74557 6.76363 6.89743 7.00632 7.18714 7.20164 7.50410 7.59552 7.80189 8.03784 8.25770 8.45091 8.82889 8.86614 10.16328 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019359 B = 0.005512 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.992356 B = 5078.681300 C = 6145.768367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.082 4.082 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.128 4.128 6 C -0.085 4.085 7 C -0.077 4.077 8 C 0.121 3.879 9 H 0.077 0.923 10 C -0.169 4.169 11 O -0.294 6.294 12 C 0.035 3.965 13 C -0.174 4.174 14 C -0.213 4.213 15 C -0.104 4.104 16 C -0.221 4.221 17 C 0.079 3.921 18 C -0.428 4.428 19 H 0.094 0.906 20 C 0.080 3.920 21 N -0.814 5.814 22 Si 0.912 3.088 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.244 1.244 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 10.605 4.787 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.146 4.146 6 C -0.103 4.103 7 C -0.077 4.077 8 C 0.064 3.936 9 H 0.094 0.906 10 C -0.227 4.227 11 O -0.208 6.208 12 C -0.010 4.010 13 C -0.193 4.193 14 C -0.233 4.233 15 C -0.122 4.122 16 C -0.240 4.240 17 C 0.076 3.924 18 C -0.456 4.456 19 H 0.112 0.888 20 C -0.137 4.137 21 N -0.439 5.439 22 Si 0.739 3.261 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.168 1.168 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.535 10.558 4.775 13.303 hybrid contribution -0.387 -0.718 0.155 0.830 sum -6.922 9.839 4.930 13.001 Atomic orbital electron populations 1.20884 0.91542 1.02892 1.02261 1.19609 0.95795 0.92365 1.00431 1.20876 0.94251 0.96930 1.02457 1.21087 0.94260 0.97892 1.00737 1.21181 0.99953 0.92446 1.01022 1.21198 0.93744 0.98865 0.96456 1.19569 0.94175 0.93023 1.00934 1.20934 0.93167 0.85259 0.94260 0.90598 1.22273 1.02364 1.01938 0.96103 1.86031 1.34145 1.27589 1.73058 1.19051 0.90074 0.89947 1.01904 1.20721 0.93051 0.99322 1.06189 1.20130 0.97361 0.96174 1.09612 1.20266 0.94104 0.97474 1.00373 1.20563 0.93946 1.00529 1.09009 1.17159 0.93708 0.89556 0.91996 1.19316 0.89392 0.95561 1.41376 0.88764 1.26132 0.94800 1.00726 0.92037 1.69675 1.08243 1.30361 1.35605 0.86331 0.79796 0.80180 0.79784 1.19784 1.22119 1.16764 0.91130 0.91212 0.91612 0.86359 0.86453 0.86122 0.84578 0.91976 0.91391 0.91616 0.88052 0.88807 0.88871 0.87716 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.39 36.01 0.34 -0.97 16 2 C -0.08 -1.12 5.88 -104.62 -0.62 -1.74 16 3 C -0.13 -1.57 9.70 -39.58 -0.38 -1.96 16 4 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 5 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 6 C -0.08 -1.42 9.35 -39.58 -0.37 -1.79 16 7 C -0.08 -1.25 5.07 -104.63 -0.53 -1.78 16 8 C 0.12 2.09 1.96 -27.88 -0.05 2.04 16 9 H 0.08 1.26 4.09 -51.93 -0.21 1.05 16 10 C -0.17 -2.60 9.21 37.16 0.34 -2.26 16 11 O -0.29 -6.51 8.01 -18.62 -0.15 -6.66 16 12 C 0.03 0.82 6.57 -38.33 -0.25 0.57 16 13 C -0.17 -3.66 8.29 -39.48 -0.33 -3.98 16 14 C -0.21 -4.43 10.04 -39.34 -0.39 -4.83 16 15 C -0.10 -2.27 9.97 -40.00 -0.40 -2.67 16 16 C -0.22 -5.40 6.99 -39.27 -0.27 -5.67 16 17 C 0.08 2.05 5.14 -106.68 -0.55 1.50 16 18 C -0.43 -11.83 9.21 -37.84 -0.35 -12.18 16 19 H 0.09 2.78 7.92 -52.48 -0.42 2.37 16 20 C 0.08 2.15 5.46 -17.33 -0.09 2.06 16 21 N -0.81 -22.08 13.93 55.55 0.77 -21.31 16 22 Si 0.91 21.19 24.42 -169.99 -4.15 17.04 16 23 H -0.27 -6.09 6.65 56.52 0.38 -5.71 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.24 -5.82 6.72 56.52 0.38 -5.44 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.80 6.03 -51.93 -0.31 0.48 16 28 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.14 2.54 7.35 -52.49 -0.39 2.15 16 33 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.07 1.09 7.21 -51.93 -0.37 0.71 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.83 5.65 -52.49 -0.30 1.54 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.11 2.54 4.42 -52.49 -0.23 2.31 16 40 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 LS Contribution 322.71 15.07 4.86 4.86 Total: -1.00 -28.80 322.71 -8.57 -37.37 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.20 Total: 6.49 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: -4.71 Total: -37.80 kcal Atomic # 7 Polarization: -22.08 SS G_CDS: 0.77 Total: -21.31 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.15 Total: -6.66 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.15 Total: 17.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.80 -8.57 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.179 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds