Wall clock time and date at job start Tue Mar 31 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 120.00106 * 2 1 4 4 C 1.38214 * 119.99630 * 179.79154 * 3 2 1 5 5 C 1.38252 * 120.00261 * 0.46197 * 4 3 2 6 6 C 1.38224 * 119.99931 * 359.76871 * 5 4 3 7 7 C 1.38216 * 119.99716 * 180.27639 * 2 1 3 8 8 C 1.50695 * 119.99754 * 359.97438 * 7 2 1 9 9 H 1.08999 * 109.47766 * 34.99589 * 8 7 2 10 10 C 1.53006 * 109.46845 * 274.99824 * 8 7 2 11 11 O 1.42902 * 109.47121 * 155.00288 * 8 7 2 12 12 C 1.35639 * 117.00138 * 202.63792 * 11 8 7 13 13 C 1.38451 * 120.26326 * 2.50679 * 12 11 8 14 14 C 1.38309 * 120.04410 * 179.74526 * 13 12 11 15 15 C 1.38814 * 120.59838 * 0.55164 * 14 13 12 16 16 C 1.36495 * 120.53669 * 359.70145 * 15 14 13 17 17 C 1.40731 * 119.92588 * 0.02562 * 16 15 14 18 18 C 1.41152 * 120.28484 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99662 * 149.30058 * 18 17 16 20 20 C 1.39927 * 120.00449 * 329.30122 * 18 17 16 21 21 N 1.30869 * 120.00522 * 166.52660 * 20 18 17 22 22 Si 1.86806 * 119.99980 * 346.52354 * 20 18 17 23 23 H 1.48498 * 109.46913 * 92.78760 * 22 20 18 24 24 H 1.48496 * 109.46941 * 212.78737 * 22 20 18 25 25 H 1.48501 * 109.46660 * 332.78420 * 22 20 18 26 26 H 1.09002 * 109.46864 * 269.73033 * 1 2 3 27 27 H 1.08994 * 109.47678 * 149.72209 * 1 2 3 28 28 H 1.09005 * 109.47311 * 29.72373 * 1 2 3 29 29 H 1.08000 * 119.99728 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.99479 * 180.25504 * 4 3 2 31 31 H 1.07996 * 120.00182 * 179.79435 * 5 4 3 32 32 H 1.07991 * 119.99864 * 179.97438 * 6 5 4 33 33 H 1.08994 * 109.47199 * 60.00267 * 10 8 7 34 34 H 1.09004 * 109.47148 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47451 * 300.00159 * 10 8 7 36 36 H 1.07997 * 119.97636 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.69709 * 180.27378 * 14 13 12 38 38 H 1.07997 * 119.73720 * 179.72356 * 15 14 13 39 39 H 1.07995 * 120.03629 * 179.97438 * 16 15 14 40 40 H 0.96994 * 120.00255 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1972 0.0044 5 6 4.2717 -0.0001 -0.0009 6 6 3.5805 -1.1971 -0.0058 7 6 2.1980 -1.1970 -0.0058 8 6 1.4444 -2.5020 -0.0115 9 1 0.5335 -2.3930 -0.6000 10 6 1.0811 -2.8873 1.4240 11 8 2.2634 -3.5225 -0.5858 12 6 1.6283 -4.6049 -1.1004 13 6 0.2452 -4.6662 -1.1036 14 6 -0.3978 -5.7698 -1.6343 15 6 0.3315 -6.8290 -2.1569 16 6 1.6960 -6.7961 -2.1613 17 6 2.3732 -5.6817 -1.6323 18 6 3.7841 -5.6395 -1.6335 19 1 4.2959 -4.6918 -1.7131 20 6 4.5196 -6.8255 -1.5314 21 7 5.8017 -6.8251 -1.7943 22 14 3.6717 -8.4094 -1.0199 23 1 3.2312 -9.1483 -2.2304 24 1 4.6190 -9.2498 -0.2443 25 1 2.4908 -8.0891 -0.1783 26 1 -0.3633 -0.0048 1.0277 27 1 -0.3634 -0.8874 -0.5181 28 1 -0.3634 0.8925 -0.5096 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1325 0.0085 31 1 5.3517 -0.0001 -0.0009 32 1 4.1205 -2.1323 -0.0103 33 1 0.4565 -2.1090 1.8621 34 1 0.5364 -3.8315 1.4200 35 1 1.9920 -2.9964 2.0126 36 1 -0.3321 -3.8497 -0.6956 37 1 -1.4771 -5.8097 -1.6379 38 1 -0.1849 -7.6858 -2.5637 39 1 2.2554 -7.6248 -2.5697 40 1 6.3114 -7.6473 -1.7240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:44 Heat of formation + Delta-G solvation = -12.914020 kcal Electronic energy + Delta-G solvation = -21732.916431 eV Core-core repulsion = 18669.705396 eV Total energy + Delta-G solvation = -3063.211035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24739 -40.04820 -38.10936 -35.47821 -34.43049 -33.09121 -32.29524 -30.53713 -30.30764 -27.79251 -26.92998 -25.07875 -23.66150 -22.84958 -22.00390 -21.19589 -19.45319 -18.71160 -17.72761 -17.13536 -16.31419 -16.22869 -15.97205 -15.87606 -15.47978 -15.32959 -14.94362 -14.58892 -14.17796 -14.03173 -13.96590 -13.80418 -13.33195 -13.20601 -13.08145 -13.04005 -12.76787 -12.66365 -12.52651 -12.13906 -11.89397 -11.77677 -11.71112 -11.47643 -11.28431 -10.93300 -9.71854 -9.54533 -9.52319 -8.92695 -8.83190 -6.37715 0.38700 0.47338 0.74205 0.85641 1.24113 1.39591 1.47645 2.12543 2.56299 2.63897 2.84012 3.47170 3.69788 3.87201 4.00657 4.08749 4.21008 4.23005 4.24739 4.38638 4.44849 4.49964 4.60376 4.70134 4.75890 4.81100 4.86916 4.89024 4.97205 5.06512 5.09733 5.16357 5.23079 5.30807 5.33439 5.55995 5.62082 5.69166 5.74704 5.78260 5.97597 6.11691 6.19846 6.35730 6.49907 6.81475 7.11237 8.26289 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019359 B = 0.005512 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.992356 B = 5078.681300 C = 6145.768367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.139 4.139 6 C -0.118 4.118 7 C -0.100 4.100 8 C 0.115 3.885 9 H 0.089 0.911 10 C -0.162 4.162 11 O -0.323 6.323 12 C 0.027 3.973 13 C -0.175 4.175 14 C -0.186 4.186 15 C -0.117 4.117 16 C -0.225 4.225 17 C 0.043 3.957 18 C -0.465 4.465 19 H 0.045 0.955 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.969 3.031 23 H -0.254 1.254 24 H -0.282 1.282 25 H -0.253 1.253 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 12.002 5.362 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.157 4.157 6 C -0.137 4.137 7 C -0.100 4.100 8 C 0.059 3.941 9 H 0.106 0.894 10 C -0.219 4.219 11 O -0.238 6.238 12 C -0.018 4.018 13 C -0.194 4.194 14 C -0.205 4.205 15 C -0.135 4.135 16 C -0.245 4.245 17 C 0.041 3.959 18 C -0.496 4.496 19 H 0.064 0.936 20 C -0.173 4.173 21 N -0.491 5.491 22 Si 0.793 3.207 23 H -0.180 1.180 24 H -0.209 1.209 25 H -0.176 1.176 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.147 0.853 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.888 11.966 5.347 17.038 hybrid contribution 0.730 -0.913 -0.016 1.169 sum -10.157 11.053 5.331 15.929 Atomic orbital electron populations 1.20968 0.89136 1.03748 1.03678 1.19967 0.97559 0.91557 0.99198 1.21357 0.94294 0.97898 1.00446 1.21481 0.94857 0.98123 0.98883 1.21345 1.00627 0.92463 1.01301 1.21049 0.94687 0.98367 0.99548 1.19635 0.93805 0.93723 1.02816 1.21263 0.93144 0.84600 0.95067 0.89370 1.22228 1.02060 1.02784 0.94854 1.86041 1.36286 1.28225 1.73261 1.19325 0.91331 0.89834 1.01320 1.21138 0.91947 1.00709 1.05604 1.20764 0.99644 0.94525 1.05556 1.20696 0.93046 0.99308 1.00424 1.20734 0.95443 0.99762 1.08520 1.17397 0.93180 0.91705 0.93637 1.19148 0.90797 0.94214 1.45397 0.93627 1.26831 0.95285 1.03320 0.91821 1.69725 1.09480 1.31511 1.38398 0.85455 0.78560 0.76820 0.79826 1.17964 1.20875 1.17643 0.89260 0.91840 0.89294 0.82596 0.83091 0.85338 0.88752 0.88496 0.91932 0.93302 0.84599 0.84336 0.85233 0.88062 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 9.39 71.24 0.67 -1.46 16 2 C -0.08 -2.07 5.88 -19.86 -0.12 -2.19 16 3 C -0.12 -2.61 9.70 22.27 0.22 -2.40 16 4 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 5 C -0.14 -4.09 10.05 22.27 0.22 -3.87 16 6 C -0.12 -4.31 9.35 22.27 0.21 -4.10 16 7 C -0.10 -3.28 5.07 -19.87 -0.10 -3.38 16 8 C 0.12 4.01 1.96 29.85 0.06 4.07 16 9 H 0.09 2.78 4.09 -2.39 -0.01 2.77 16 10 C -0.16 -4.87 9.21 71.98 0.66 -4.20 16 11 O -0.32 -15.20 8.01 -89.53 -0.72 -15.91 16 12 C 0.03 1.29 6.57 23.08 0.15 1.44 16 13 C -0.18 -6.92 8.29 22.34 0.19 -6.74 16 14 C -0.19 -6.88 10.04 22.42 0.23 -6.65 16 15 C -0.12 -4.72 9.97 22.00 0.22 -4.50 16 16 C -0.23 -10.91 6.99 22.47 0.16 -10.75 16 17 C 0.04 2.34 5.14 -21.20 -0.11 2.23 16 18 C -0.47 -28.07 9.21 23.39 0.22 -27.85 16 19 H 0.05 3.06 7.92 -2.91 -0.02 3.03 16 20 C 0.04 2.23 5.46 85.25 0.47 2.70 16 21 N -0.86 -50.47 13.93 21.83 0.30 -50.16 16 22 Si 0.97 45.09 24.42 68.60 1.67 46.77 16 23 H -0.25 -10.98 6.65 99.48 0.66 -10.32 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.25 -11.90 6.72 99.48 0.67 -11.23 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.22 6.03 -2.39 -0.01 1.21 16 28 H 0.09 1.20 8.08 -2.38 -0.02 1.18 16 29 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.09 4.12 7.35 -2.92 -0.02 4.09 16 33 H 0.10 2.18 7.92 -2.39 -0.02 2.16 16 34 H 0.06 1.92 7.21 -2.39 -0.02 1.90 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.14 4.37 5.65 -2.91 -0.02 4.36 16 37 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.10 4.89 4.42 -2.91 -0.01 4.88 16 40 H 0.29 15.28 8.30 -92.71 -0.77 14.51 16 Total: -1.00 -69.29 322.71 5.77 -63.51 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.96 Total: 25.88 kcal Atomic # 6 Polarization: -73.63 SS G_CDS: 3.55 Total: -70.08 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.30 Total: -50.16 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.72 Total: -15.91 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.67 Total: 46.77 kcal Total: -69.29 5.77 -63.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.599 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds