Wall clock time and date at job start Tue Mar 31 2020 05:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46742 * 2 1 4 4 N 1.46900 * 109.46759 * 119.99937 * 2 1 3 5 5 C 1.53001 * 109.46965 * 240.00162 * 2 1 3 6 6 N 1.46906 * 109.46667 * 185.29462 * 5 2 1 7 7 C 1.46894 * 110.99762 * 287.26063 * 6 5 2 8 8 C 1.50702 * 109.47407 * 76.92726 * 7 6 5 9 9 H 1.07993 * 120.00006 * 5.44804 * 8 7 6 10 10 C 1.37878 * 119.99829 * 185.45026 * 8 7 6 11 11 N 1.31510 * 120.00160 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99599 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46662 * 90.00300 * 12 10 8 14 14 H 1.48498 * 109.46924 * 209.99855 * 12 10 8 15 15 H 1.48496 * 109.47308 * 330.00454 * 12 10 8 16 16 C 1.46899 * 110.99828 * 163.30333 * 6 5 2 17 17 C 1.50696 * 109.47253 * 293.95752 * 16 6 5 18 18 C 1.38248 * 119.98131 * 269.72189 * 17 16 6 19 19 C 1.38218 * 120.00692 * 179.72519 * 18 17 16 20 20 C 1.38347 * 119.99240 * 0.55416 * 19 18 17 21 21 Cl 1.73592 * 120.01752 * 179.70154 * 20 19 18 22 22 C 1.38358 * 119.96786 * 359.72230 * 20 19 18 23 23 C 1.38211 * 119.99199 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47341 * 299.99804 * 1 2 3 25 25 H 1.09004 * 109.47187 * 60.00190 * 1 2 3 26 26 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 27 27 H 1.00900 * 111.00108 * 296.04626 * 4 2 1 28 28 H 1.00899 * 110.99786 * 60.00513 * 4 2 1 29 29 H 1.09000 * 109.46914 * 305.28794 * 5 2 1 30 30 H 1.08999 * 109.47379 * 65.29646 * 5 2 1 31 31 H 1.09002 * 109.46924 * 196.92612 * 7 6 5 32 32 H 1.09006 * 109.47496 * 316.92395 * 7 6 5 33 33 H 0.97008 * 119.99972 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.47175 * 53.95408 * 16 6 5 35 35 H 1.09000 * 109.47110 * 173.95086 * 16 6 5 36 36 H 1.07997 * 119.99541 * 0.02562 * 18 17 16 37 37 H 1.08001 * 120.00149 * 180.27281 * 19 18 17 38 38 H 1.08003 * 119.99988 * 179.97438 * 22 20 19 39 39 H 1.07994 * 119.99816 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7212 -1.2493 6 7 3.5035 -0.8329 -1.1870 7 6 4.1412 0.4691 -1.4233 8 6 4.0324 1.3148 -0.1807 9 1 3.6182 0.8946 0.7238 10 6 4.4616 2.6250 -0.1987 11 7 4.9654 3.1368 -1.3003 12 14 4.3260 3.6733 1.3415 13 1 5.5685 3.5378 2.1434 14 1 4.1375 5.0953 0.9572 15 1 3.1644 3.2203 2.1480 16 6 3.9954 -1.8402 -2.1363 17 6 3.5135 -3.2046 -1.7156 18 6 4.2816 -3.9762 -0.8637 19 6 3.8374 -5.2254 -0.4729 20 6 2.6294 -5.7083 -0.9436 21 17 2.0746 -7.2803 -0.4595 22 6 1.8639 -4.9379 -1.8008 23 6 2.3060 -3.6863 -2.1859 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7501 -0.1990 2.0373 28 1 1.6961 -1.6479 1.2227 29 1 1.6013 -1.7179 -1.2979 30 1 1.7562 -0.1556 -2.1367 31 1 5.1923 0.3194 -1.6700 32 1 3.6421 0.9734 -2.2509 33 1 5.2677 4.0585 -1.3129 34 1 3.6191 -1.6136 -3.1340 35 1 5.0853 -1.8272 -2.1475 36 1 5.2265 -3.6009 -0.4995 37 1 4.4355 -5.8263 0.1961 38 1 0.9210 -5.3145 -2.1689 39 1 1.7088 -3.0850 -2.8553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235962088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:25 Heat of formation + Delta-G solvation = 23.964633 kcal Electronic energy + Delta-G solvation = -20290.205326 eV Core-core repulsion = 17258.453371 eV Total energy + Delta-G solvation = -3031.751955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43574 -37.35146 -36.37014 -34.34679 -32.62406 -30.98595 -30.85464 -28.35568 -27.06393 -26.24332 -23.81250 -22.70498 -21.42113 -20.59419 -19.46432 -17.00229 -16.27055 -15.77581 -15.37901 -15.12277 -14.72890 -14.33126 -14.01006 -13.49270 -13.39585 -13.32970 -13.09009 -12.63359 -12.33711 -12.24672 -11.75970 -11.67444 -11.43785 -11.30924 -11.08287 -10.99025 -10.87238 -10.74112 -10.54377 -10.35659 -10.09588 -9.40121 -9.02957 -8.88313 -8.45354 -8.29161 -7.73655 -7.11737 -5.92372 -3.88260 1.27272 1.41408 2.15839 3.36728 3.43309 3.46125 3.74390 4.50633 4.85151 4.95410 4.99104 5.10501 5.33869 5.40755 5.43226 5.48383 5.62406 5.76354 5.80619 5.84934 5.90848 6.08424 6.13208 6.20544 6.29041 6.32411 6.37873 6.40466 6.45349 6.80164 6.93401 7.08831 7.28273 7.37769 7.96199 8.04626 8.20851 8.25433 8.30960 8.67217 9.29322 9.72810 11.18680 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.004297 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.728697 B = 6514.601758 C = 6832.963842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.118 0.882 4 N -0.810 5.810 5 C 0.073 3.927 6 N -0.506 5.506 7 C 0.192 3.808 8 C -0.494 4.494 9 H 0.095 0.905 10 C 0.047 3.953 11 N -0.906 5.906 12 Si 0.894 3.106 13 H -0.283 1.283 14 H -0.292 1.292 15 H -0.274 1.274 16 C 0.085 3.915 17 C -0.048 4.048 18 C -0.083 4.083 19 C -0.111 4.111 20 C -0.043 4.043 21 Cl -0.087 7.087 22 C -0.114 4.114 23 C -0.107 4.107 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.325 0.675 28 H 0.321 0.679 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.021 0.979 32 H -0.007 1.007 33 H 0.257 0.743 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -15.089 -0.373 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.028 4.028 3 H 0.136 0.864 4 N -0.336 5.336 5 C -0.056 4.056 6 N -0.230 5.230 7 C 0.067 3.933 8 C -0.533 4.533 9 H 0.113 0.887 10 C -0.153 4.153 11 N -0.547 5.547 12 Si 0.722 3.278 13 H -0.209 1.209 14 H -0.218 1.218 15 H -0.199 1.199 16 C -0.043 4.043 17 C -0.049 4.049 18 C -0.101 4.101 19 C -0.130 4.130 20 C -0.070 4.070 21 Cl -0.058 7.058 22 C -0.133 4.133 23 C -0.126 4.126 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.011 0.989 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.098 0.902 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.849 -15.052 -0.233 16.150 hybrid contribution -1.401 0.733 0.194 1.593 sum -7.250 -14.320 -0.039 16.050 Atomic orbital electron populations 1.22729 1.00065 1.00510 1.01432 1.21773 0.88804 1.01924 0.90267 0.86450 1.58586 1.67262 1.04538 1.03217 1.22032 0.89686 0.98042 0.95813 1.62101 1.04054 1.09222 1.47608 1.19823 0.93646 0.83232 0.96619 1.21673 1.38673 0.94589 0.98318 0.88678 1.25047 0.96142 0.98211 0.95879 1.69978 1.43301 1.14706 1.26752 0.86571 0.78437 0.79217 0.83540 1.20910 1.21850 1.19923 1.21118 1.00352 0.88857 0.93997 1.20104 0.93705 0.95878 0.95181 1.21038 1.00428 0.92563 0.96116 1.21015 0.94827 0.96676 1.00490 1.20832 0.96763 0.87718 1.01669 1.98344 1.89651 1.26719 1.91073 1.20919 0.99815 0.94445 0.98129 1.21026 0.96202 0.94837 1.00496 0.93305 0.92819 0.93891 0.86311 0.86713 0.92772 0.96019 0.96067 0.98912 0.93312 0.95323 0.90230 0.84852 0.85385 0.85602 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.76 9.48 37.16 0.35 -2.41 16 2 C 0.08 1.51 2.60 -67.71 -0.18 1.34 16 3 H 0.12 2.58 5.49 -51.93 -0.29 2.30 16 4 N -0.81 -13.90 7.74 -4.67 -0.04 -13.94 16 5 C 0.07 1.33 4.48 -3.82 -0.02 1.31 16 6 N -0.51 -10.13 4.17 -237.51 -0.99 -11.12 16 7 C 0.19 4.75 4.77 -4.98 -0.02 4.73 16 8 C -0.49 -13.10 6.86 -34.44 -0.24 -13.34 16 9 H 0.10 2.48 5.32 -52.49 -0.28 2.20 16 10 C 0.05 1.29 5.46 -17.82 -0.10 1.20 16 11 N -0.91 -26.53 13.29 55.43 0.74 -25.79 16 12 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.08 1.44 5.10 -4.98 -0.03 1.41 16 17 C -0.05 -0.70 4.94 -104.62 -0.52 -1.21 16 18 C -0.08 -1.13 9.70 -39.59 -0.38 -1.52 16 19 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 20 C -0.04 -0.53 6.32 -39.50 -0.25 -0.78 16 21 Cl -0.09 -0.97 28.96 -51.86 -1.50 -2.47 16 22 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 23 C -0.11 -1.39 7.85 -39.59 -0.31 -1.70 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.33 5.21 9.07 -39.29 -0.36 4.85 16 28 H 0.32 5.02 9.00 -39.29 -0.35 4.67 16 29 H 0.05 0.88 5.09 -51.93 -0.26 0.61 16 30 H 0.02 0.42 7.79 -51.93 -0.40 0.01 16 31 H 0.02 0.57 7.71 -51.93 -0.40 0.17 16 32 H -0.01 -0.19 7.75 -51.93 -0.40 -0.59 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 35 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 36 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 39 H 0.13 1.51 7.71 -52.49 -0.40 1.11 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -28.40 329.88 -9.95 -38.35 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.64 Total: 8.10 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.46 Total: -14.52 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.29 Total: -50.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.40 -9.95 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235962088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.316 kcal (2) G-P(sol) polarization free energy of solvation -28.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds