Wall clock time and date at job start Tue Mar 31 2020 05:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46742 * 2 1 4 4 N 1.46900 * 109.46759 * 119.99937 * 2 1 3 5 5 C 1.53001 * 109.46965 * 240.00162 * 2 1 3 6 6 N 1.46906 * 109.46667 * 185.29462 * 5 2 1 7 7 C 1.46894 * 110.99762 * 287.26063 * 6 5 2 8 8 C 1.50702 * 109.47407 * 76.92726 * 7 6 5 9 9 H 1.07993 * 120.00006 * 5.44804 * 8 7 6 10 10 C 1.37878 * 119.99829 * 185.45026 * 8 7 6 11 11 N 1.31510 * 120.00160 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99599 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46662 * 90.00300 * 12 10 8 14 14 H 1.48498 * 109.46924 * 209.99855 * 12 10 8 15 15 H 1.48496 * 109.47308 * 330.00454 * 12 10 8 16 16 C 1.46899 * 110.99828 * 163.30333 * 6 5 2 17 17 C 1.50696 * 109.47253 * 293.95752 * 16 6 5 18 18 C 1.38248 * 119.98131 * 269.72189 * 17 16 6 19 19 C 1.38218 * 120.00692 * 179.72519 * 18 17 16 20 20 C 1.38347 * 119.99240 * 0.55416 * 19 18 17 21 21 Cl 1.73592 * 120.01752 * 179.70154 * 20 19 18 22 22 C 1.38358 * 119.96786 * 359.72230 * 20 19 18 23 23 C 1.38211 * 119.99199 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47341 * 299.99804 * 1 2 3 25 25 H 1.09004 * 109.47187 * 60.00190 * 1 2 3 26 26 H 1.08998 * 109.47231 * 179.97438 * 1 2 3 27 27 H 1.00900 * 111.00108 * 296.04626 * 4 2 1 28 28 H 1.00899 * 110.99786 * 60.00513 * 4 2 1 29 29 H 1.09000 * 109.46914 * 305.28794 * 5 2 1 30 30 H 1.08999 * 109.47379 * 65.29646 * 5 2 1 31 31 H 1.09002 * 109.46924 * 196.92612 * 7 6 5 32 32 H 1.09006 * 109.47496 * 316.92395 * 7 6 5 33 33 H 0.97008 * 119.99972 * 180.02562 * 11 10 8 34 34 H 1.09003 * 109.47175 * 53.95408 * 16 6 5 35 35 H 1.09000 * 109.47110 * 173.95086 * 16 6 5 36 36 H 1.07997 * 119.99541 * 0.02562 * 18 17 16 37 37 H 1.08001 * 120.00149 * 180.27281 * 19 18 17 38 38 H 1.08003 * 119.99988 * 179.97438 * 22 20 19 39 39 H 1.07994 * 119.99816 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7212 -1.2493 6 7 3.5035 -0.8329 -1.1870 7 6 4.1412 0.4691 -1.4233 8 6 4.0324 1.3148 -0.1807 9 1 3.6182 0.8946 0.7238 10 6 4.4616 2.6250 -0.1987 11 7 4.9654 3.1368 -1.3003 12 14 4.3260 3.6733 1.3415 13 1 5.5685 3.5378 2.1434 14 1 4.1375 5.0953 0.9572 15 1 3.1644 3.2203 2.1480 16 6 3.9954 -1.8402 -2.1363 17 6 3.5135 -3.2046 -1.7156 18 6 4.2816 -3.9762 -0.8637 19 6 3.8374 -5.2254 -0.4729 20 6 2.6294 -5.7083 -0.9436 21 17 2.0746 -7.2803 -0.4595 22 6 1.8639 -4.9379 -1.8008 23 6 2.3060 -3.6863 -2.1859 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7501 -0.1990 2.0373 28 1 1.6961 -1.6479 1.2227 29 1 1.6013 -1.7179 -1.2979 30 1 1.7562 -0.1556 -2.1367 31 1 5.1923 0.3194 -1.6700 32 1 3.6421 0.9734 -2.2509 33 1 5.2677 4.0585 -1.3129 34 1 3.6191 -1.6136 -3.1340 35 1 5.0853 -1.8272 -2.1475 36 1 5.2265 -3.6009 -0.4995 37 1 4.4355 -5.8263 0.1961 38 1 0.9210 -5.3145 -2.1689 39 1 1.7088 -3.0850 -2.8553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235962088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:25 Heat of formation + Delta-G solvation = 6.408897 kcal Electronic energy + Delta-G solvation = -20290.966600 eV Core-core repulsion = 17258.453371 eV Total energy + Delta-G solvation = -3032.513229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55305 -38.76924 -37.35248 -35.77173 -34.60513 -32.18908 -31.97834 -29.75157 -28.87439 -27.55897 -25.46777 -23.71523 -23.01137 -21.86235 -20.98597 -18.39412 -17.85259 -17.24232 -16.68504 -16.36886 -16.28983 -15.89664 -15.45271 -14.79994 -14.66002 -14.38422 -14.25341 -14.14525 -13.80722 -13.57679 -13.28623 -13.18774 -12.91218 -12.67606 -12.50304 -12.38317 -12.27334 -12.16194 -12.06616 -11.72292 -11.62859 -11.15636 -10.96594 -10.43077 -9.88800 -9.50111 -9.07615 -8.79737 -8.03885 -6.05935 0.23051 0.41993 1.21215 1.45390 1.46965 1.56973 2.49303 2.69476 3.27774 3.48875 3.86484 3.89719 4.00129 4.03985 4.22745 4.34322 4.45344 4.46646 4.66037 4.67195 4.71949 4.77144 4.85699 4.86646 5.06581 5.08905 5.21042 5.23936 5.29275 5.32380 5.38014 5.63734 5.72502 5.90131 5.94585 6.27579 6.47255 6.71380 6.80171 6.99283 7.19732 7.59378 9.06940 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.004297 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.728697 B = 6514.601758 C = 6832.963842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 H 0.074 0.926 4 N -0.820 5.820 5 C 0.075 3.925 6 N -0.507 5.507 7 C 0.206 3.794 8 C -0.490 4.490 9 H 0.102 0.898 10 C -0.009 4.009 11 N -0.947 5.947 12 Si 0.957 3.043 13 H -0.282 1.282 14 H -0.294 1.294 15 H -0.260 1.260 16 C 0.086 3.914 17 C -0.062 4.062 18 C -0.091 4.091 19 C -0.110 4.110 20 C -0.045 4.045 21 Cl -0.074 7.074 22 C -0.109 4.109 23 C -0.108 4.108 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.333 0.667 28 H 0.333 0.667 29 H 0.081 0.919 30 H 0.008 0.992 31 H -0.006 1.006 32 H -0.039 1.039 33 H 0.256 0.744 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 -17.017 0.922 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.026 4.026 3 H 0.092 0.908 4 N -0.348 5.348 5 C -0.054 4.054 6 N -0.230 5.230 7 C 0.080 3.920 8 C -0.529 4.529 9 H 0.119 0.881 10 C -0.204 4.204 11 N -0.590 5.590 12 Si 0.784 3.216 13 H -0.208 1.208 14 H -0.220 1.220 15 H -0.184 1.184 16 C -0.042 4.042 17 C -0.062 4.062 18 C -0.110 4.110 19 C -0.128 4.128 20 C -0.072 4.072 21 Cl -0.045 7.045 22 C -0.128 4.128 23 C -0.126 4.126 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.099 0.901 30 H 0.026 0.974 31 H 0.012 0.988 32 H -0.021 1.021 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.557 -17.014 1.075 18.648 hybrid contribution -0.889 1.187 -0.239 1.502 sum -8.446 -15.827 0.836 17.959 Atomic orbital electron populations 1.22571 0.97155 1.01960 1.01933 1.21525 0.91100 0.99403 0.90523 0.90763 1.58473 1.67858 1.05316 1.03175 1.22088 0.88395 0.99334 0.95551 1.62009 1.05152 1.07171 1.48682 1.19482 0.92078 0.85432 0.95012 1.21990 1.37275 0.94775 0.98852 0.88070 1.25860 0.96163 0.99725 0.98694 1.70120 1.44970 1.14940 1.28949 0.85551 0.78730 0.77269 0.80041 1.20786 1.22014 1.18375 1.21095 0.99899 0.89672 0.93546 1.19858 0.94969 0.94638 0.96763 1.21065 1.00428 0.93231 0.96258 1.21162 0.95099 0.96152 1.00398 1.20982 0.96636 0.88261 1.01292 1.98354 1.89459 1.25746 1.90919 1.21133 1.00465 0.93734 0.97432 1.21102 0.95580 0.95490 1.00458 0.92375 0.92830 0.91872 0.85479 0.85387 0.90089 0.97425 0.98818 1.02142 0.93538 0.95214 0.91208 0.85190 0.83720 0.83385 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.79 9.48 71.98 0.68 -4.11 16 2 C 0.09 3.04 2.60 44.92 0.12 3.15 16 3 H 0.07 3.29 5.49 -2.39 -0.01 3.28 16 4 N -0.82 -26.80 7.74 -168.68 -1.31 -28.11 16 5 C 0.07 2.68 4.48 86.30 0.39 3.07 16 6 N -0.51 -20.60 4.17 -905.36 -3.78 -24.38 16 7 C 0.21 10.68 4.77 85.56 0.41 11.08 16 8 C -0.49 -26.61 6.86 25.60 0.18 -26.43 16 9 H 0.10 5.29 5.32 -2.91 -0.02 5.27 16 10 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 11 N -0.95 -57.29 13.29 21.45 0.28 -57.00 16 12 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 16 C 0.09 2.95 5.10 85.56 0.44 3.39 16 17 C -0.06 -1.73 4.94 -19.86 -0.10 -1.83 16 18 C -0.09 -2.39 9.70 22.27 0.22 -2.17 16 19 C -0.11 -2.47 9.83 22.29 0.22 -2.25 16 20 C -0.05 -0.98 6.32 22.32 0.14 -0.84 16 21 Cl -0.07 -1.43 28.96 -2.72 -0.08 -1.51 16 22 C -0.11 -2.29 9.83 22.29 0.22 -2.07 16 23 C -0.11 -2.56 7.85 22.26 0.17 -2.39 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.33 10.02 9.07 -89.69 -0.81 9.21 16 28 H 0.33 9.56 9.00 -89.69 -0.81 8.75 16 29 H 0.08 2.47 5.09 -2.39 -0.01 2.46 16 30 H 0.01 0.29 7.79 -2.39 -0.02 0.28 16 31 H -0.01 -0.35 7.71 -2.39 -0.02 -0.37 16 32 H -0.04 -2.24 7.75 -2.38 -0.02 -2.26 16 33 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 34 H 0.03 1.01 8.06 -2.39 -0.02 0.99 16 35 H 0.07 2.49 7.76 -2.39 -0.02 2.47 16 36 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.13 2.92 7.71 -2.91 -0.02 2.90 16 Total: -1.00 -61.97 329.88 0.13 -61.84 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.56 Total: 24.03 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 3.54 Total: -21.42 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.80 Total: -109.49 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -61.97 0.13 -61.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235962088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.245 kcal (2) G-P(sol) polarization free energy of solvation -61.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds