Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35910 * 117.00084 * 2 1 4 4 C 1.38839 * 119.99237 * 359.97438 * 3 2 1 5 5 C 1.38203 * 120.18575 * 179.97438 * 4 3 2 6 6 C 1.38070 * 120.18172 * 359.76851 * 5 4 3 7 7 C 1.39348 * 119.98518 * 0.50566 * 6 5 4 8 8 C 1.48402 * 120.08994 * 179.74292 * 7 6 5 9 9 C 1.39337 * 120.11639 * 129.97778 * 8 7 6 10 10 C 1.38016 * 119.87490 * 180.27921 * 9 8 7 11 11 C 1.38322 * 120.11965 * 359.44634 * 10 9 8 12 12 C 1.50699 * 119.87892 * 180.27893 * 11 10 9 13 13 C 1.50699 * 109.47376 * 90.00237 * 12 11 10 14 14 H 1.08007 * 119.99684 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00437 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00366 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99980 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47428 * 90.00028 * 17 15 13 19 19 H 1.48498 * 109.47467 * 210.00050 * 17 15 13 20 20 H 1.48502 * 109.47135 * 330.00026 * 17 15 13 21 21 C 1.38317 * 120.24468 * 0.30345 * 11 10 9 22 22 C 1.38017 * 120.12247 * 359.97438 * 21 11 10 23 23 C 1.38494 * 119.99856 * 179.97438 * 3 2 1 24 24 C 1.50706 * 120.09041 * 359.95800 * 23 3 2 25 25 H 1.09004 * 109.46869 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47153 * 299.99950 * 1 2 3 27 27 H 1.08992 * 109.47172 * 60.00249 * 1 2 3 28 28 H 1.08002 * 119.90263 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.90760 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.00644 * 180.25648 * 6 5 4 31 31 H 1.07998 * 120.06179 * 0.02562 * 9 8 7 32 32 H 1.08002 * 119.94256 * 179.73126 * 10 9 8 33 33 H 1.09002 * 109.47409 * 210.00129 * 12 11 10 34 34 H 1.09001 * 109.47241 * 330.00419 * 12 11 10 35 35 H 0.96992 * 120.00403 * 180.02562 * 16 15 13 36 36 H 1.08006 * 119.94063 * 180.02562 * 21 11 10 37 37 H 1.08005 * 120.06420 * 179.97438 * 22 21 11 38 38 H 1.08996 * 109.47082 * 270.02245 * 24 23 3 39 39 H 1.09006 * 109.46913 * 30.01867 * 24 23 3 40 40 H 1.09001 * 109.47216 * 150.02056 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2897 2.3753 -0.0005 5 6 1.9130 3.6088 0.0000 6 6 3.2913 3.6900 0.0059 7 6 4.0576 2.5262 0.0007 8 6 5.5392 2.6109 0.0012 9 6 6.2813 1.8734 0.9215 10 6 7.6587 1.9604 0.9214 11 6 8.3031 2.7688 0.0024 12 6 9.8076 2.8548 0.0030 13 6 10.3717 1.7964 -0.9094 14 1 9.7071 1.1279 -1.4367 15 6 11.7361 1.6806 -1.0703 16 7 12.2284 0.7565 -1.8662 17 14 12.8856 2.8353 -0.1567 18 1 13.2405 2.2428 1.1579 19 1 14.1198 3.0403 -0.9565 20 1 12.2103 4.1409 0.0549 21 6 7.5716 3.4990 -0.9168 22 6 6.1935 3.4240 -0.9219 23 6 3.4291 1.2834 0.0005 24 6 4.2518 0.0207 0.0021 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2113 2.3168 -0.0005 29 1 1.3203 4.5116 0.0000 30 1 3.7754 4.6555 0.0105 31 1 5.7794 1.2382 1.6363 32 1 8.2348 1.3926 1.6371 33 1 10.1154 3.8395 -0.3489 34 1 10.1801 2.6980 1.0153 35 1 13.1883 0.6748 -1.9791 36 1 8.0798 4.1284 -1.6324 37 1 5.6232 3.9949 -1.6398 38 1 4.4494 -0.2829 1.0301 39 1 3.7048 -0.7700 -0.5116 40 1 5.1962 0.2018 -0.5112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238981949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = -2.057507 kcal Electronic energy + Delta-G solvation = -20773.035155 eV Core-core repulsion = 17710.294894 eV Total energy + Delta-G solvation = -3062.740261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42152 -38.88436 -37.26337 -33.84209 -32.80867 -31.74295 -30.35156 -29.86201 -27.74367 -27.35192 -26.38420 -23.35258 -22.23308 -21.50334 -21.18234 -19.97476 -17.93829 -16.78381 -16.38359 -15.93053 -15.67944 -15.62452 -14.78506 -14.58570 -14.12879 -13.99459 -13.54214 -13.40723 -12.97171 -12.85189 -12.53005 -12.36385 -12.13908 -12.09715 -11.90698 -11.67462 -11.56533 -11.20702 -11.15599 -10.74743 -10.68910 -10.29465 -10.08237 -9.94646 -9.39892 -8.84946 -8.59515 -8.36028 -8.18321 -7.62121 -6.08379 -4.07843 1.06937 1.40736 1.99347 2.09090 3.14317 3.27860 3.35826 3.38333 3.70834 4.39707 4.40441 4.67782 4.70294 4.90892 4.91227 4.98665 5.16416 5.21579 5.23143 5.34352 5.41473 5.47510 5.55750 5.76046 5.81490 5.83451 5.89828 6.08214 6.12675 6.27208 6.33856 6.38175 6.52668 6.53308 6.60186 6.76290 6.92992 7.00100 7.03687 7.06844 7.30416 7.56238 7.56956 7.69848 8.48130 8.96914 9.51598 11.04533 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.003347 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.246648 B = 8363.576555 C = 8840.794354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.123 3.877 4 C -0.213 4.213 5 C -0.088 4.088 6 C -0.144 4.144 7 C 0.008 3.992 8 C -0.086 4.086 9 C -0.100 4.100 10 C -0.124 4.124 11 C -0.020 4.020 12 C 0.012 3.988 13 C -0.513 4.513 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.105 4.105 24 C -0.108 4.108 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.704 3.418 5.082 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.079 3.921 4 C -0.232 4.232 5 C -0.106 4.106 6 C -0.162 4.162 7 C 0.008 3.992 8 C -0.086 4.086 9 C -0.118 4.118 10 C -0.142 4.142 11 C -0.020 4.020 12 C -0.025 4.025 13 C -0.551 4.551 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.141 4.141 22 C -0.119 4.119 23 C -0.106 4.106 24 C -0.165 4.165 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.451 3.139 5.005 23.215 hybrid contribution 0.356 0.647 0.328 0.808 sum -22.095 3.786 5.334 23.042 Atomic orbital electron populations 1.23019 0.78808 1.03709 1.01150 1.86077 1.20933 1.26917 1.88865 1.18708 0.91609 0.84114 0.97712 1.21163 0.99633 0.92403 1.09989 1.20793 0.94455 0.96771 0.98570 1.21143 0.93381 0.97945 1.03723 1.18576 0.92353 0.91574 0.96670 1.18435 0.90321 1.00836 0.98969 1.21109 0.93853 0.98507 0.98283 1.21009 0.93539 0.99610 1.00059 1.20375 0.97588 0.92027 0.91975 1.18850 0.87611 0.98286 0.97775 1.20919 0.92234 1.15725 1.26224 0.90776 1.25000 0.98093 0.95216 0.94936 1.69899 1.12901 1.33449 1.37535 0.86804 0.80541 0.82114 0.80052 1.20153 1.21253 1.18921 1.20994 0.93040 1.00844 0.99264 1.21043 0.94437 0.98410 0.98017 1.19303 0.90321 0.95775 1.05162 1.20739 0.99582 0.93870 1.02272 0.88409 0.92844 0.92824 0.85830 0.85955 0.85724 0.86615 0.86101 0.95342 0.95770 0.92578 0.86112 0.86741 0.91416 0.91595 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.70 9.54 -19.46 -0.19 -3.89 16 3 C 0.12 1.59 6.65 -39.26 -0.26 1.32 16 4 C -0.21 -2.34 9.03 -39.37 -0.36 -2.70 16 5 C -0.09 -0.95 10.03 -39.66 -0.40 -1.35 16 6 C -0.14 -1.81 9.51 -39.23 -0.37 -2.18 16 7 C 0.01 0.12 5.47 -104.91 -0.57 -0.45 16 8 C -0.09 -1.38 4.73 -104.89 -0.50 -1.88 16 9 C -0.10 -1.65 7.90 -39.25 -0.31 -1.96 16 10 C -0.12 -2.33 9.68 -39.63 -0.38 -2.71 16 11 C -0.02 -0.41 5.07 -104.56 -0.53 -0.94 16 12 C 0.01 0.28 4.17 -29.04 -0.12 0.16 16 13 C -0.51 -14.48 9.65 -34.44 -0.33 -14.81 16 14 H 0.07 2.30 7.98 -52.48 -0.42 1.88 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 17 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 21 C -0.12 -2.32 9.68 -39.63 -0.38 -2.70 16 22 C -0.10 -1.67 9.52 -39.25 -0.37 -2.04 16 23 C -0.10 -1.49 5.88 -104.14 -0.61 -2.11 16 24 C -0.11 -1.49 8.22 36.01 0.30 -1.20 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.12 1.03 6.28 -52.49 -0.33 0.70 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 1.42 8.04 -52.49 -0.42 1.00 16 31 H 0.12 1.69 6.82 -52.49 -0.36 1.33 16 32 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.03 0.67 7.14 -51.93 -0.37 0.29 16 34 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 36 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 37 H 0.11 1.63 8.05 -52.48 -0.42 1.21 16 38 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 39 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 40 H 0.08 1.16 6.44 -51.93 -0.33 0.83 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -31.38 331.42 -8.88 -40.26 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.48 Total: 1.22 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -4.32 Total: -32.46 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.77 Total: -26.72 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.19 Total: -3.89 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.38 -8.88 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238981949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.206 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds