Wall clock time and date at job start Tue Mar 31 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46803 * 2 1 4 4 O 1.42900 * 109.47264 * 240.00547 * 2 1 3 5 5 C 1.50693 * 109.47367 * 119.99970 * 2 1 3 6 6 C 1.32766 * 119.99793 * 120.00190 * 5 2 1 7 7 C 1.47534 * 119.99750 * 179.97438 * 6 5 2 8 8 C 1.37901 * 120.41907 * 0.02562 * 7 6 5 9 9 C 1.41074 * 120.41898 * 179.97438 * 8 7 6 10 10 C 1.41241 * 119.47899 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99467 * 333.78303 * 10 9 8 12 12 C 1.39919 * 120.00177 * 153.77985 * 10 9 8 13 13 N 1.30838 * 119.99901 * 342.26245 * 12 10 9 14 14 Si 1.86794 * 119.99601 * 162.25676 * 12 10 9 15 15 H 1.48501 * 109.47048 * 90.00415 * 14 12 10 16 16 H 1.48509 * 109.46850 * 209.99845 * 14 12 10 17 17 H 1.48498 * 109.47756 * 329.99879 * 14 12 10 18 18 C 1.39963 * 121.04805 * 359.97438 * 9 8 7 19 19 C 1.39881 * 120.29588 * 0.02562 * 18 9 8 20 20 C 1.40883 * 121.06868 * 180.02562 * 19 18 9 21 21 C 1.36190 * 119.61942 * 179.97438 * 20 19 18 22 22 C 1.39231 * 120.94060 * 0.02562 * 21 20 19 23 23 C 1.36558 * 120.95962 * 359.97438 * 22 21 20 24 24 C 1.39753 * 119.74730 * 359.73266 * 23 22 21 25 25 H 1.08998 * 109.46992 * 299.99317 * 1 2 3 26 26 H 1.09000 * 109.47336 * 59.99658 * 1 2 3 27 27 H 1.09004 * 109.46469 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47004 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47454 * 300.00269 * 3 2 1 30 30 H 1.09007 * 109.46955 * 60.00561 * 3 2 1 31 31 H 0.96700 * 113.99778 * 299.99976 * 4 2 1 32 32 H 1.07999 * 120.00648 * 300.00229 * 5 2 1 33 33 H 1.08003 * 119.99536 * 0.27445 * 6 5 2 34 34 H 1.08000 * 119.78829 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99822 * 180.02562 * 13 12 10 36 36 H 1.07996 * 119.84830 * 180.02562 * 18 9 8 37 37 H 1.08003 * 120.18963 * 359.95820 * 20 19 18 38 38 H 1.07999 * 119.52499 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.51807 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.12962 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0324 -0.7104 1.2304 6 6 2.7958 -1.7898 1.1085 7 6 3.2881 -2.4849 2.3131 8 6 2.9602 -2.0213 3.5698 9 6 3.4305 -2.6863 4.7216 10 6 3.0821 -2.1946 5.9990 11 1 2.8479 -1.1483 6.1294 12 6 3.0404 -3.0628 7.0955 13 7 2.9773 -4.3556 6.9041 14 14 3.0751 -2.3762 8.8323 15 1 1.6858 -2.1260 9.2934 16 1 3.7287 -3.3545 9.7384 17 1 3.8382 -1.1023 8.8460 18 6 4.2360 -3.8263 4.6187 19 6 4.5911 -4.3283 3.3623 20 6 5.4005 -5.4749 3.2398 21 6 5.7278 -5.9386 2.0018 22 6 5.2741 -5.2953 0.8534 23 6 4.4880 -4.1817 0.9360 24 6 4.1262 -3.6798 2.1891 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6767 1.9564 0.8901 31 1 1.7211 -1.5951 -1.2330 32 1 1.7716 -0.3415 2.2113 33 1 3.0603 -2.1561 0.1275 34 1 2.3388 -1.1440 3.6728 35 1 2.9480 -4.9575 7.6642 36 1 4.5850 -4.3204 5.5134 37 1 5.7597 -5.9830 4.1226 38 1 6.3488 -6.8174 1.9096 39 1 5.5473 -5.6830 -0.1168 40 1 4.1432 -3.6935 0.0365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239160849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:08 Heat of formation + Delta-G solvation = -14.772638 kcal Electronic energy + Delta-G solvation = -21157.794228 eV Core-core repulsion = 18094.502598 eV Total energy + Delta-G solvation = -3063.291631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.01805 -38.27862 -35.78638 -34.16546 -32.62841 -31.92853 -30.04806 -29.61132 -27.34263 -27.28245 -25.37026 -22.99981 -21.79342 -21.39831 -20.17271 -18.94327 -17.34817 -16.99266 -16.09230 -15.74328 -15.03340 -14.90753 -14.63156 -14.33913 -13.49184 -13.14936 -12.83815 -12.71372 -12.52320 -12.42638 -12.40784 -12.20645 -12.04776 -11.68750 -11.66344 -11.36822 -11.11524 -10.91334 -10.84948 -10.76804 -10.50084 -10.35228 -10.00909 -9.60166 -9.56637 -9.50656 -8.94507 -8.33071 -7.51882 -6.90406 -6.57229 -4.43196 1.41732 2.26370 2.47645 2.92458 3.00056 3.05066 3.62374 3.82416 4.04762 4.28104 4.77316 4.89773 5.01814 5.13393 5.47118 5.59234 5.60635 5.66784 5.74138 5.76005 5.78038 5.85091 5.92023 6.07086 6.08411 6.20940 6.26719 6.34326 6.52404 6.60766 6.82286 6.85852 6.95896 6.99183 7.12483 7.28799 7.38236 7.43443 7.52677 7.67450 7.72196 7.86717 8.04774 8.11567 8.47468 8.69593 8.76244 10.04171 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.005731 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.291314 B = 4884.648599 C = 6913.412017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.162 3.838 3 C -0.133 4.133 4 O -0.562 6.562 5 C -0.216 4.216 6 C -0.077 4.077 7 C -0.065 4.065 8 C -0.127 4.127 9 C 0.098 3.902 10 C -0.451 4.451 11 H 0.080 0.920 12 C 0.074 3.926 13 N -0.780 5.780 14 Si 0.908 3.092 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.260 1.260 18 C -0.199 4.199 19 C -0.003 4.003 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.188 4.188 23 C -0.082 4.082 24 C -0.117 4.117 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.375 0.625 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.283 0.717 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 4.099 -7.622 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.122 3.878 3 C -0.190 4.190 4 O -0.368 6.368 5 C -0.234 4.234 6 C -0.094 4.094 7 C -0.065 4.065 8 C -0.146 4.146 9 C 0.095 3.905 10 C -0.480 4.480 11 H 0.098 0.902 12 C -0.145 4.145 13 N -0.404 5.404 14 Si 0.732 3.268 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.183 1.183 18 C -0.219 4.219 19 C -0.003 4.003 20 C -0.154 4.154 21 C -0.139 4.139 22 C -0.207 4.207 23 C -0.100 4.100 24 C -0.117 4.117 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.910 4.468 -7.583 9.006 hybrid contribution -0.326 -0.490 1.068 1.219 sum -2.236 3.978 -6.515 7.954 Atomic orbital electron populations 1.22432 0.95564 1.02556 1.02424 1.20068 0.92193 0.92476 0.83107 1.21691 1.02175 0.93171 1.01964 1.86518 1.77397 1.29027 1.43887 1.23798 1.02223 0.98398 0.98949 1.21602 0.95756 0.94824 0.97267 1.19636 0.99395 0.95322 0.92189 1.21534 1.00725 1.00512 0.91808 1.17402 0.89350 0.91768 0.91957 1.19625 1.40000 0.96276 0.92065 0.90231 1.25913 0.92400 0.94470 1.01764 1.69834 1.33166 1.03559 1.33837 0.86313 0.79387 0.80138 0.80995 1.19401 1.19923 1.18332 1.21193 1.04234 1.01929 0.94582 1.17947 0.95246 0.93751 0.93361 1.20931 1.00700 0.97167 0.96628 1.20490 1.00855 0.99556 0.92986 1.20352 1.04176 0.98950 0.97189 1.20634 0.97440 0.95925 0.96049 1.18570 1.03395 0.97200 0.92580 0.91450 0.92077 0.92232 0.91801 0.92193 0.91135 0.77681 0.86210 0.86775 0.87761 0.90587 0.86108 0.87326 0.88108 0.88155 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 8.80 37.16 0.33 -1.57 16 2 C 0.16 2.09 1.37 -91.77 -0.13 1.96 16 3 C -0.13 -1.57 8.83 37.16 0.33 -1.24 16 4 O -0.56 -7.44 11.95 -35.23 -0.42 -7.86 16 5 C -0.22 -3.33 8.20 -36.19 -0.30 -3.63 16 6 C -0.08 -1.33 8.74 -37.67 -0.33 -1.66 16 7 C -0.07 -1.40 6.03 -102.91 -0.62 -2.02 16 8 C -0.13 -2.92 9.08 -38.63 -0.35 -3.27 16 9 C 0.10 2.49 5.55 -107.04 -0.59 1.90 16 10 C -0.45 -11.34 8.99 -37.81 -0.34 -11.68 16 11 H 0.08 1.89 7.91 -52.49 -0.41 1.48 16 12 C 0.07 1.77 5.09 -17.35 -0.09 1.69 16 13 N -0.78 -19.53 11.01 55.55 0.61 -18.92 16 14 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 18 C -0.20 -5.11 8.37 -38.32 -0.32 -5.44 16 19 C 0.00 -0.07 5.74 -106.89 -0.61 -0.68 16 20 C -0.14 -2.91 9.78 -39.32 -0.38 -3.29 16 21 C -0.12 -2.29 9.95 -39.95 -0.40 -2.69 16 22 C -0.19 -3.48 9.96 -39.82 -0.40 -3.88 16 23 C -0.08 -1.62 9.44 -39.62 -0.37 -1.99 16 24 C -0.12 -2.62 5.91 -104.62 -0.62 -3.24 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.38 3.99 8.06 45.56 0.37 4.35 16 32 H 0.12 1.90 6.04 -52.49 -0.32 1.59 16 33 H 0.11 1.80 4.86 -52.48 -0.26 1.55 16 34 H 0.10 2.18 6.14 -52.49 -0.32 1.86 16 35 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 36 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 37 H 0.11 2.18 8.06 -52.48 -0.42 1.75 16 38 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.78 6.37 -52.49 -0.33 1.45 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -27.53 330.55 -9.59 -37.13 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -4.54 Total: 12.56 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: -5.19 Total: -40.73 kcal Atomic # 7 Polarization: -19.53 SS G_CDS: 0.61 Total: -18.92 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.42 Total: -7.86 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.53 -9.59 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239160849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.355 kcal (2) G-P(sol) polarization free energy of solvation -27.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds