Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38324 * 119.94140 * 2 1 4 4 C 1.38328 * 120.24927 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.93824 * 180.02562 * 4 3 2 6 6 C 1.38011 * 120.12177 * 0.02562 * 4 3 2 7 7 C 1.39356 * 119.87776 * 359.97438 * 6 4 3 8 8 C 1.48360 * 120.12453 * 180.02562 * 7 6 4 9 9 C 1.39376 * 120.06560 * 180.02562 * 8 7 6 10 10 C 1.37908 * 119.93187 * 180.02562 * 9 8 7 11 11 C 1.38828 * 120.06561 * 359.97438 * 10 9 8 12 12 O 1.35872 * 119.93279 * 179.97438 * 11 10 9 13 13 C 1.42905 * 117.00133 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47264 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99574 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99734 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00111 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47123 * 89.99915 * 18 16 14 20 20 H 1.48498 * 109.47161 * 209.99603 * 18 16 14 21 21 H 1.48497 * 109.47329 * 329.99749 * 18 16 14 22 22 C 1.38832 * 120.13425 * 0.25860 * 11 10 9 23 23 C 1.37910 * 120.06072 * 359.48925 * 22 11 10 24 24 C 1.38025 * 119.93781 * 180.29751 * 2 1 3 25 25 H 1.09010 * 109.47112 * 90.00039 * 1 2 3 26 26 H 1.08997 * 109.47564 * 209.99553 * 1 2 3 27 27 H 1.08999 * 109.47082 * 330.00553 * 1 2 3 28 28 H 1.07994 * 119.87520 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.46823 * 270.02207 * 5 4 3 30 30 H 1.09000 * 109.47264 * 30.02088 * 5 4 3 31 31 H 1.09000 * 109.47235 * 150.01848 * 5 4 3 32 32 H 1.08003 * 120.06405 * 180.02562 * 6 4 3 33 33 H 1.07993 * 120.03252 * 0.03989 * 9 8 7 34 34 H 1.08001 * 119.96535 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47103 * 300.00466 * 13 12 11 36 36 H 1.09004 * 109.47054 * 59.99970 * 13 12 11 37 37 H 0.97007 * 120.00011 * 180.02562 * 17 16 14 38 38 H 1.08001 * 119.97066 * 179.71742 * 22 11 10 39 39 H 1.07998 * 120.02859 * 180.27565 * 23 22 11 40 40 H 1.07994 * 120.06453 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1986 0.0000 4 6 3.5806 1.2061 0.0005 5 6 4.3257 2.5160 0.0011 6 6 4.2796 0.0161 0.0005 7 6 3.5893 -1.1945 0.0005 8 6 4.3352 -2.4770 0.0011 9 6 3.6436 -3.6870 0.0006 10 6 4.3397 -4.8775 0.0017 11 6 5.7279 -4.8714 0.0027 12 8 6.4111 -6.0459 0.0043 13 6 7.8379 -5.9666 0.0059 14 6 8.4184 -7.3573 0.0069 15 1 7.7632 -8.2159 0.0068 16 6 9.7858 -7.5336 0.0080 17 7 10.2924 -8.7472 0.0093 18 14 10.9190 -6.0485 0.0089 19 1 11.2181 -5.6550 1.4092 20 1 12.1837 -6.3904 -0.6900 21 1 10.2559 -4.9194 -0.6916 22 6 6.4197 -3.6677 0.0081 23 6 5.7290 -2.4740 0.0018 24 6 2.1958 -1.1961 -0.0062 25 1 -0.3634 0.0000 -1.0278 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5137 28 1 1.6544 2.1322 -0.0004 29 1 4.5053 2.8322 -1.0265 30 1 3.7317 3.2716 0.5152 31 1 5.2788 2.3916 0.5150 32 1 5.3596 0.0230 0.0014 33 1 2.5636 -3.6923 -0.0009 34 1 3.8043 -5.8155 0.0017 35 1 8.1732 -5.4339 -0.8840 36 1 8.1711 -5.4328 0.8960 37 1 11.2545 -8.8712 0.0104 38 1 7.4997 -3.6661 0.0136 39 1 6.2676 -1.5380 0.0016 40 1 1.6558 -2.1313 -0.0115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239525213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -6.975577 kcal Electronic energy + Delta-G solvation = -20324.011439 eV Core-core repulsion = 17261.057914 eV Total energy + Delta-G solvation = -3062.953525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09107 -39.12922 -36.90375 -33.73837 -33.08269 -32.56578 -30.92600 -29.17812 -28.06087 -27.18248 -26.84848 -23.48817 -22.94605 -21.69448 -20.42514 -20.14463 -17.98803 -16.86019 -16.34154 -15.83527 -15.71930 -14.99158 -14.90995 -14.26206 -14.22876 -13.97470 -13.81453 -13.55199 -13.42476 -12.89617 -12.76255 -12.73944 -12.66857 -12.35805 -12.09699 -11.87852 -11.73777 -11.23827 -11.14419 -11.11679 -10.98937 -10.49751 -10.34853 -10.01424 -9.38962 -9.01942 -8.81917 -8.73587 -8.67666 -7.36097 -6.27192 -4.29512 0.83517 1.27449 1.60430 2.08083 3.14709 3.21240 3.22352 3.60799 4.09681 4.20394 4.21347 4.59501 4.60375 4.61423 4.93635 5.03274 5.08857 5.14400 5.17289 5.17775 5.34151 5.36267 5.37095 5.40997 5.54456 5.61812 5.64921 5.72874 5.90148 5.98065 6.03821 6.23769 6.27339 6.35013 6.35797 6.49099 6.58668 6.67567 6.70906 6.86023 6.93774 7.06002 7.34383 7.94469 8.46653 8.82059 9.28454 10.85107 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029008 B = 0.003179 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.007266 B = 8805.726936 C = 9744.982841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 C -0.133 4.133 4 C -0.079 4.079 5 C -0.114 4.114 6 C -0.127 4.127 7 C -0.010 4.010 8 C -0.115 4.115 9 C -0.066 4.066 10 C -0.165 4.165 11 C 0.158 3.842 12 O -0.300 6.300 13 C 0.167 3.833 14 C -0.530 4.530 15 H 0.087 0.913 16 C 0.078 3.922 17 N -0.887 5.887 18 Si 0.873 3.127 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.216 4.216 23 C -0.063 4.063 24 C -0.127 4.127 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.020 0.980 36 H 0.015 0.985 37 H 0.270 0.730 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 21.290 -0.074 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.079 4.079 5 C -0.171 4.171 6 C -0.145 4.145 7 C -0.010 4.010 8 C -0.115 4.115 9 C -0.084 4.084 10 C -0.183 4.183 11 C 0.110 3.890 12 O -0.212 6.212 13 C 0.093 3.907 14 C -0.568 4.568 15 H 0.105 0.895 16 C -0.125 4.125 17 N -0.524 5.524 18 Si 0.699 3.301 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.234 4.234 23 C -0.081 4.081 24 C -0.145 4.145 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.632 20.953 -0.073 26.142 hybrid contribution 1.014 0.769 0.001 1.273 sum -14.618 21.722 -0.072 26.183 Atomic orbital electron populations 1.20784 0.91281 1.02684 1.02264 1.19795 0.95890 0.92986 0.99293 1.20856 0.93454 0.97334 1.03493 1.19795 0.93772 0.95109 0.99250 1.20789 0.99982 0.94004 1.02276 1.21085 0.99792 0.91203 1.02455 1.18745 0.92748 0.92120 0.97436 1.18499 0.92844 0.91787 1.08388 1.20910 0.99260 0.90867 0.97362 1.20380 0.91294 0.98801 1.07854 1.19428 0.92086 0.86107 0.91412 1.86168 1.23236 1.26184 1.85609 1.21040 0.73742 1.00001 0.95901 1.20768 0.92429 0.90789 1.52785 0.89528 1.24703 0.97434 0.96133 0.94236 1.69852 1.12849 1.20636 1.49087 0.86887 0.80935 0.83179 0.79067 1.19584 1.20383 1.18941 1.21336 1.00854 0.92106 1.09154 1.20947 0.93014 0.97409 0.96735 1.21070 0.93258 0.97643 1.02520 0.91230 0.91506 0.91684 0.86461 0.91220 0.91666 0.91517 0.85916 0.85639 0.85108 0.96238 0.96699 0.92003 0.85133 0.86037 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.08 -0.81 5.88 -104.67 -0.61 -1.43 16 3 C -0.13 -1.33 9.35 -39.52 -0.37 -1.69 16 4 C -0.08 -0.83 5.87 -104.67 -0.61 -1.44 16 5 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 6 C -0.13 -1.51 9.08 -39.25 -0.36 -1.87 16 7 C -0.01 -0.14 5.88 -104.90 -0.62 -0.75 16 8 C -0.11 -1.66 5.88 -104.88 -0.62 -2.28 16 9 C -0.07 -0.94 9.42 -39.28 -0.37 -1.31 16 10 C -0.16 -2.72 9.97 -39.48 -0.39 -3.11 16 11 C 0.16 3.08 6.69 -39.14 -0.26 2.82 16 12 O -0.30 -7.02 10.12 -19.34 -0.20 -7.21 16 13 C 0.17 4.11 3.56 36.01 0.13 4.24 16 14 C -0.53 -15.30 9.99 -34.44 -0.34 -15.64 16 15 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 16 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 17 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 18 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 22 C -0.22 -3.83 9.02 -39.48 -0.36 -4.19 16 23 C -0.06 -0.95 9.42 -39.28 -0.37 -1.32 16 24 C -0.13 -1.46 9.08 -39.24 -0.36 -1.82 16 25 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.12 1.32 6.20 -52.48 -0.33 1.00 16 33 H 0.13 1.41 6.20 -52.49 -0.33 1.09 16 34 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.02 0.48 6.72 -51.93 -0.35 0.13 16 36 H 0.02 0.36 7.07 -51.93 -0.37 -0.01 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.13 2.33 6.28 -52.49 -0.33 2.00 16 39 H 0.12 1.53 6.20 -52.49 -0.33 1.21 16 40 H 0.12 1.24 6.20 -52.49 -0.33 0.91 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -30.92 332.84 -9.27 -40.20 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.31 Total: 0.61 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -4.89 Total: -28.66 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.77 Total: -25.83 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.20 Total: -7.21 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.92 -9.27 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239525213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.220 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds