Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 C 1.50700 * 109.47136 * 120.00388 * 2 1 3 5 5 C 1.38325 * 119.87516 * 119.99691 * 4 2 1 6 6 C 1.38007 * 120.12792 * 179.70360 * 5 4 2 7 7 C 1.39385 * 119.87017 * 0.27515 * 6 5 4 8 8 C 1.48294 * 120.12644 * 179.97438 * 7 6 5 9 9 C 1.39287 * 120.15374 * 309.72334 * 8 7 6 10 10 C 1.38019 * 119.94125 * 179.72025 * 9 8 7 11 11 C 1.38441 * 120.27233 * 0.55726 * 10 9 8 12 12 C 1.38115 * 120.31972 * 359.71945 * 11 10 9 13 13 C 1.38754 * 120.05238 * 359.97438 * 12 11 10 14 14 O 1.35661 * 120.13464 * 179.97438 * 13 12 11 15 15 C 1.34816 * 117.00059 * 354.40013 * 14 13 12 16 16 H 1.08001 * 120.00189 * 5.06226 * 15 14 13 17 17 C 1.38648 * 120.00030 * 185.06554 * 15 14 13 18 18 N 1.31557 * 120.00170 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00276 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47014 * 59.99636 * 19 17 15 21 21 H 1.48494 * 109.47330 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46883 * 300.00063 * 19 17 15 23 23 C 1.39391 * 119.75278 * 0.02562 * 7 6 5 24 24 C 1.38008 * 119.87081 * 0.02562 * 23 7 6 25 25 H 1.09004 * 109.46748 * 300.00174 * 1 2 3 26 26 H 1.09000 * 109.46961 * 59.99637 * 1 2 3 27 27 H 1.08992 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46748 * 239.99826 * 2 1 3 29 29 H 1.09002 * 109.46718 * 60.00435 * 3 2 1 30 30 H 1.08998 * 109.46549 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47025 * 300.00325 * 3 2 1 32 32 H 1.08003 * 119.93538 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.06282 * 180.25913 * 6 5 4 34 34 H 1.08005 * 120.03124 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.86167 * 180.29658 * 10 9 8 36 36 H 1.07990 * 119.84052 * 179.74352 * 11 10 9 37 37 H 1.08003 * 119.97172 * 180.02562 * 12 11 10 38 38 H 0.97001 * 120.00410 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.06905 * 179.97438 * 23 7 6 40 40 H 1.08000 * 119.93901 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8274 -1.8349 1.1004 6 6 3.2954 -2.4861 2.2237 7 6 2.9606 -2.0119 3.4909 8 6 3.4598 -2.7075 4.7017 9 6 3.3052 -4.0857 4.8306 10 6 3.7766 -4.7295 5.9568 11 6 4.3932 -4.0093 6.9657 12 6 4.5472 -2.6415 6.8519 13 6 4.0839 -1.9816 5.7227 14 8 4.2339 -0.6381 5.6095 15 6 4.7359 0.0139 6.6774 16 1 5.0746 -0.5419 7.5392 17 6 4.8174 1.3980 6.6693 18 7 4.4052 2.0751 5.6193 19 14 5.5136 2.3014 8.1486 20 1 6.9122 1.8610 8.3843 21 1 5.4924 3.7636 7.8908 22 1 4.6905 1.9975 9.3466 23 6 2.1540 -0.8820 3.6159 24 6 1.6909 -0.2396 2.4856 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.0861 -2.2015 0.1180 33 1 3.9195 -3.3615 2.1209 34 1 2.8205 -4.6508 4.0481 35 1 3.6603 -5.7989 6.0532 36 1 4.7557 -4.5196 7.8456 37 1 5.0294 -2.0853 7.6422 38 1 4.4625 3.0434 5.6134 39 1 1.8911 -0.5104 4.5953 40 1 1.0662 0.6362 2.5812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239625861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = 3.871448 kcal Electronic energy + Delta-G solvation = -21381.730157 eV Core-core repulsion = 18319.246995 eV Total energy + Delta-G solvation = -3062.483162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.49196 -38.48724 -36.39391 -35.03829 -32.32560 -31.21676 -30.33559 -29.02112 -27.65782 -26.97878 -25.36398 -23.30410 -22.17909 -21.34637 -20.71092 -19.46789 -17.95999 -17.14935 -15.98070 -15.18245 -14.83497 -14.61831 -14.40210 -14.03927 -13.69525 -13.52064 -13.36261 -13.28400 -13.19301 -12.62914 -12.60782 -12.15527 -11.91336 -11.72726 -11.68513 -11.34012 -11.00159 -10.97321 -10.83865 -10.78893 -10.71592 -10.47172 -10.23996 -10.19793 -9.34591 -8.86459 -8.50176 -8.26289 -7.71606 -7.08014 -6.45927 -4.04452 1.65159 2.08479 2.33870 2.43321 3.12086 3.12886 3.15400 3.94639 4.33399 4.62040 4.94563 5.05214 5.08297 5.22745 5.38217 5.40780 5.57828 5.59747 5.66269 5.66858 5.75587 5.82382 5.93649 5.99408 6.02403 6.07102 6.13711 6.22580 6.27699 6.40460 6.48928 6.58904 6.67571 6.70005 6.77128 7.02564 7.07148 7.18239 7.22265 7.28475 7.35522 7.47628 7.66873 7.80217 7.97590 8.98631 9.68203 10.70467 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.006239 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.851369 B = 4486.702857 C = 6464.432566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.127 4.127 6 C -0.117 4.117 7 C -0.015 4.015 8 C -0.133 4.133 9 C -0.062 4.062 10 C -0.216 4.216 11 C -0.071 4.071 12 C -0.235 4.235 13 C 0.163 3.837 14 O -0.163 6.163 15 C -0.396 4.396 16 H 0.090 0.910 17 C 0.043 3.957 18 N -0.854 5.854 19 Si 0.938 3.062 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.075 4.075 24 C -0.110 4.110 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.123 0.877 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -5.386 -6.686 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.201 4.201 4 C -0.092 4.092 5 C -0.145 4.145 6 C -0.135 4.135 7 C -0.016 4.016 8 C -0.135 4.135 9 C -0.080 4.080 10 C -0.235 4.235 11 C -0.090 4.090 12 C -0.254 4.254 13 C 0.109 3.891 14 O -0.066 6.066 15 C -0.472 4.472 16 H 0.108 0.892 17 C -0.162 4.162 18 N -0.488 5.488 19 Si 0.763 3.237 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.093 4.093 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.731 -4.942 -6.949 9.752 hybrid contribution 0.575 0.436 0.958 1.199 sum -4.156 -4.506 -5.991 8.571 Atomic orbital electron populations 1.21851 0.94867 1.01673 1.01579 1.20053 0.95504 0.95988 0.95502 1.21855 1.01478 0.95242 1.01551 1.19714 0.99013 0.96154 0.94280 1.20764 0.99547 0.96362 0.97782 1.21086 1.00397 1.00241 0.91738 1.18604 0.96096 0.95036 0.91817 1.17910 1.07754 0.92649 0.95157 1.20715 0.97932 0.92233 0.97100 1.20521 1.07777 0.98725 0.96445 1.20805 0.97005 0.93618 0.97533 1.21118 1.09048 0.94812 1.00400 1.19332 0.92153 0.85415 0.92227 1.83994 1.70933 1.13144 1.38480 1.21285 1.41536 0.89454 0.94912 0.89216 1.25246 0.97025 0.95475 0.98476 1.70039 1.42881 1.07798 1.28096 0.85827 0.79398 0.78431 0.80070 1.19549 1.20287 1.19525 1.21221 0.95470 0.93813 0.98753 1.20792 1.00808 0.99470 0.91774 0.92403 0.92911 0.92756 0.91106 0.92217 0.92469 0.92998 0.87010 0.86723 0.86947 0.87539 0.87501 0.85439 0.92008 0.85860 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.00 37.16 0.33 -1.31 16 2 C -0.05 -0.68 3.09 -91.77 -0.28 -0.97 16 3 C -0.14 -1.88 9.01 37.16 0.33 -1.55 16 4 C -0.09 -1.50 4.79 -104.55 -0.50 -2.00 16 5 C -0.13 -2.07 9.65 -39.63 -0.38 -2.45 16 6 C -0.12 -2.11 9.52 -39.24 -0.37 -2.48 16 7 C -0.02 -0.32 5.27 -104.90 -0.55 -0.88 16 8 C -0.13 -2.87 5.49 -104.73 -0.57 -3.45 16 9 C -0.06 -1.14 9.51 -39.27 -0.37 -1.51 16 10 C -0.22 -3.78 10.03 -39.59 -0.40 -4.17 16 11 C -0.07 -1.32 10.03 -39.55 -0.40 -1.71 16 12 C -0.23 -5.11 9.16 -39.44 -0.36 -5.47 16 13 C 0.16 3.95 6.56 -38.75 -0.25 3.69 16 14 O -0.16 -4.52 8.11 0.36 0.00 -4.52 16 15 C -0.40 -10.83 9.49 30.88 0.29 -10.54 16 16 H 0.09 2.29 5.21 -52.49 -0.27 2.01 16 17 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 18 N -0.85 -24.38 13.67 55.48 0.76 -23.62 16 19 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 C -0.07 -1.58 8.79 -39.24 -0.34 -1.93 16 24 C -0.11 -2.04 8.69 -39.63 -0.34 -2.39 16 25 H 0.06 0.69 7.36 -51.93 -0.38 0.31 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 29 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.11 1.51 7.94 -52.48 -0.42 1.10 16 33 H 0.11 1.86 8.05 -52.48 -0.42 1.44 16 34 H 0.11 1.78 8.05 -52.48 -0.42 1.36 16 35 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.12 2.85 7.69 -52.49 -0.40 2.45 16 40 H 0.11 1.95 7.08 -52.49 -0.37 1.58 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -29.46 335.50 -8.93 -38.39 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.45 Total: 7.48 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: -4.27 Total: -38.05 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.76 Total: -23.62 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.00 Total: -4.52 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.46 -8.93 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239625861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.265 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds