Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 C 1.50700 * 109.47136 * 120.00388 * 2 1 3 5 5 C 1.38325 * 119.87516 * 119.99691 * 4 2 1 6 6 C 1.38007 * 120.12792 * 179.70360 * 5 4 2 7 7 C 1.39385 * 119.87017 * 0.27515 * 6 5 4 8 8 C 1.48294 * 120.12644 * 179.97438 * 7 6 5 9 9 C 1.39287 * 120.15374 * 309.72334 * 8 7 6 10 10 C 1.38019 * 119.94125 * 179.72025 * 9 8 7 11 11 C 1.38441 * 120.27233 * 0.55726 * 10 9 8 12 12 C 1.38115 * 120.31972 * 359.71945 * 11 10 9 13 13 C 1.38754 * 120.05238 * 359.97438 * 12 11 10 14 14 O 1.35661 * 120.13464 * 179.97438 * 13 12 11 15 15 C 1.34816 * 117.00059 * 354.40013 * 14 13 12 16 16 H 1.08001 * 120.00189 * 5.06226 * 15 14 13 17 17 C 1.38648 * 120.00030 * 185.06554 * 15 14 13 18 18 N 1.31557 * 120.00170 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00276 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47014 * 59.99636 * 19 17 15 21 21 H 1.48494 * 109.47330 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46883 * 300.00063 * 19 17 15 23 23 C 1.39391 * 119.75278 * 0.02562 * 7 6 5 24 24 C 1.38008 * 119.87081 * 0.02562 * 23 7 6 25 25 H 1.09004 * 109.46748 * 300.00174 * 1 2 3 26 26 H 1.09000 * 109.46961 * 59.99637 * 1 2 3 27 27 H 1.08992 * 109.47309 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46748 * 239.99826 * 2 1 3 29 29 H 1.09002 * 109.46718 * 60.00435 * 3 2 1 30 30 H 1.08998 * 109.46549 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47025 * 300.00325 * 3 2 1 32 32 H 1.08003 * 119.93538 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.06282 * 180.25913 * 6 5 4 34 34 H 1.08005 * 120.03124 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.86167 * 180.29658 * 10 9 8 36 36 H 1.07990 * 119.84052 * 179.74352 * 11 10 9 37 37 H 1.08003 * 119.97172 * 180.02562 * 12 11 10 38 38 H 0.97001 * 120.00410 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.06905 * 179.97438 * 23 7 6 40 40 H 1.08000 * 119.93901 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8274 -1.8349 1.1004 6 6 3.2954 -2.4861 2.2237 7 6 2.9606 -2.0119 3.4909 8 6 3.4598 -2.7075 4.7017 9 6 3.3052 -4.0857 4.8306 10 6 3.7766 -4.7295 5.9568 11 6 4.3932 -4.0093 6.9657 12 6 4.5472 -2.6415 6.8519 13 6 4.0839 -1.9816 5.7227 14 8 4.2339 -0.6381 5.6095 15 6 4.7359 0.0139 6.6774 16 1 5.0746 -0.5419 7.5392 17 6 4.8174 1.3980 6.6693 18 7 4.4052 2.0751 5.6193 19 14 5.5136 2.3014 8.1486 20 1 6.9122 1.8610 8.3843 21 1 5.4924 3.7636 7.8908 22 1 4.6905 1.9975 9.3466 23 6 2.1540 -0.8820 3.6159 24 6 1.6909 -0.2396 2.4856 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.0861 -2.2015 0.1180 33 1 3.9195 -3.3615 2.1209 34 1 2.8205 -4.6508 4.0481 35 1 3.6603 -5.7989 6.0532 36 1 4.7557 -4.5196 7.8456 37 1 5.0294 -2.0853 7.6422 38 1 4.4625 3.0434 5.6134 39 1 1.8911 -0.5104 4.5953 40 1 1.0662 0.6362 2.5812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239625861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -10.095207 kcal Electronic energy + Delta-G solvation = -21382.335797 eV Core-core repulsion = 18319.246995 eV Total energy + Delta-G solvation = -3063.088802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07869 -39.98938 -38.08426 -36.27371 -34.28386 -32.67553 -31.79757 -30.63180 -29.14158 -27.95689 -27.31712 -24.69718 -23.70714 -22.93195 -22.17477 -20.75981 -19.78854 -18.88107 -17.47062 -16.65211 -16.34948 -16.28517 -15.91950 -15.55225 -15.39300 -15.04979 -14.71352 -14.55863 -14.42953 -14.26968 -14.07907 -13.55100 -13.31140 -13.26158 -13.05554 -12.82290 -12.54072 -12.40912 -12.25122 -12.17913 -12.10411 -11.95588 -11.58273 -11.45841 -11.11388 -10.79439 -10.01308 -9.72985 -9.27522 -8.73434 -8.44379 -6.11480 0.14347 0.61410 0.72933 0.91184 1.32855 1.43318 1.48105 2.16475 2.79851 2.95561 3.22248 3.51113 3.79093 3.91071 3.96774 4.18044 4.20334 4.28162 4.30952 4.36467 4.54982 4.61645 4.63386 4.65459 4.78301 4.82234 4.98176 5.02078 5.06317 5.08931 5.13158 5.15491 5.24682 5.29704 5.38710 5.41484 5.58442 5.62527 5.70932 5.75900 5.80795 5.88803 6.03770 6.22065 6.25030 6.98982 7.80978 8.76464 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.006239 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.851369 B = 4486.702857 C = 6464.432566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.085 4.085 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.043 4.043 8 C -0.144 4.144 9 C -0.062 4.062 10 C -0.191 4.191 11 C -0.071 4.071 12 C -0.250 4.250 13 C 0.121 3.879 14 O -0.210 6.210 15 C -0.418 4.418 16 H 0.097 0.903 17 C -0.017 4.017 18 N -0.908 5.908 19 Si 1.012 2.988 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.259 1.259 23 C -0.103 4.103 24 C -0.121 4.121 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.118 0.882 38 H 0.270 0.730 39 H 0.082 0.918 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 -8.050 -8.005 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.085 4.085 5 C -0.139 4.139 6 C -0.135 4.135 7 C -0.043 4.043 8 C -0.145 4.145 9 C -0.080 4.080 10 C -0.210 4.210 11 C -0.089 4.089 12 C -0.270 4.270 13 C 0.070 3.930 14 O -0.115 6.115 15 C -0.494 4.494 16 H 0.115 0.885 17 C -0.215 4.215 18 N -0.546 5.546 19 Si 0.832 3.168 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.184 1.184 23 C -0.121 4.121 24 C -0.139 4.139 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.727 -7.668 -8.261 12.223 hybrid contribution 0.483 0.961 1.276 1.669 sum -4.244 -6.708 -6.985 10.573 Atomic orbital electron populations 1.21831 0.93494 1.02160 1.02218 1.20155 0.96615 0.95549 0.94471 1.21859 1.00607 0.95582 1.02085 1.20141 0.97844 0.96024 0.94541 1.21235 0.98100 0.95574 0.99009 1.21353 1.00258 1.00946 0.90947 1.18771 0.97019 0.95479 0.93053 1.18353 1.07063 0.94128 0.94947 1.21158 0.97408 0.90936 0.98494 1.21115 1.04280 1.00872 0.94705 1.21234 0.96285 0.92106 0.99238 1.21273 1.09478 0.96611 0.99608 1.19956 0.93953 0.84833 0.94292 1.83980 1.73442 1.14997 1.39129 1.21749 1.41848 0.90282 0.95526 0.88539 1.26455 0.97337 0.96023 1.01704 1.70200 1.45707 1.07904 1.30759 0.84736 0.78982 0.76930 0.76132 1.18366 1.19687 1.18389 1.21055 0.97803 0.95397 0.97870 1.20895 1.01154 0.99555 0.92263 0.93625 0.90481 0.92351 0.88568 0.94047 0.93819 0.90148 0.83011 0.84513 0.83671 0.82903 0.83725 0.86389 0.92086 0.89985 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.00 71.98 0.65 -2.26 16 2 C -0.05 -1.19 3.09 -11.54 -0.04 -1.23 16 3 C -0.14 -3.61 9.01 71.98 0.65 -2.96 16 4 C -0.09 -2.74 4.79 -19.82 -0.09 -2.83 16 5 C -0.12 -3.71 9.65 22.24 0.21 -3.49 16 6 C -0.12 -4.11 9.52 22.49 0.21 -3.90 16 7 C -0.04 -1.86 5.27 -20.05 -0.11 -1.97 16 8 C -0.14 -6.34 5.49 -19.93 -0.11 -6.45 16 9 C -0.06 -2.15 9.51 22.47 0.21 -1.94 16 10 C -0.19 -5.95 10.03 22.27 0.22 -5.72 16 11 C -0.07 -2.45 10.03 22.29 0.22 -2.22 16 12 C -0.25 -11.15 9.16 22.36 0.20 -10.95 16 13 C 0.12 6.16 6.56 22.81 0.15 6.31 16 14 O -0.21 -12.62 8.11 -21.62 -0.18 -12.80 16 15 C -0.42 -24.53 9.49 67.92 0.64 -23.88 16 16 H 0.10 5.24 5.21 -2.91 -0.02 5.23 16 17 C -0.02 -0.95 5.49 84.83 0.47 -0.48 16 18 N -0.91 -55.72 13.67 21.61 0.30 -55.43 16 19 Si 1.01 43.44 29.55 68.60 2.03 45.47 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.10 -4.74 8.79 22.49 0.20 -4.55 16 24 C -0.12 -4.71 8.69 22.24 0.19 -4.52 16 25 H 0.04 1.05 7.36 -2.39 -0.02 1.04 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.88 7.87 -2.39 -0.02 1.86 16 29 H 0.04 1.17 7.39 -2.39 -0.02 1.15 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.15 3.42 7.94 -2.91 -0.02 3.40 16 33 H 0.14 4.09 8.05 -2.91 -0.02 4.07 16 34 H 0.15 4.05 8.05 -2.91 -0.02 4.03 16 35 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.15 3.88 8.06 -2.92 -0.02 3.86 16 37 H 0.12 5.33 5.64 -2.91 -0.02 5.32 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.08 4.34 7.69 -2.91 -0.02 4.31 16 40 H 0.12 4.30 7.08 -2.91 -0.02 4.28 16 Total: -1.00 -71.42 335.50 7.07 -64.35 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 1.03 Total: 31.44 kcal Atomic # 6 Polarization: -76.94 SS G_CDS: 3.90 Total: -73.04 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.30 Total: -55.43 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.18 Total: -12.80 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.42 7.07 -64.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239625861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.259 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds