Wall clock time and date at job start Tue Mar 31 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35604 * 116.99835 * 2 1 4 4 C 1.38515 * 120.08542 * 359.97438 * 3 2 1 5 5 C 1.38026 * 120.30674 * 179.76168 * 4 3 2 6 6 C 1.39932 * 120.47024 * 0.51993 * 5 4 3 7 7 C 1.48375 * 119.91598 * 179.76071 * 6 5 4 8 8 C 1.39370 * 120.12093 * 129.72324 * 7 6 5 9 9 C 1.37991 * 119.87555 * 179.97438 * 8 7 6 10 10 C 1.38346 * 120.12515 * 0.25009 * 9 8 7 11 11 C 1.38311 * 120.24420 * 359.49218 * 10 9 8 12 12 C 1.50695 * 119.94028 * 180.25817 * 11 10 9 13 13 C 1.38034 * 120.12076 * 0.50645 * 11 10 9 14 14 C 1.50700 * 120.06436 * 179.72212 * 13 11 10 15 15 C 1.38611 * 120.15955 * 359.47757 * 6 5 4 16 16 C 1.40518 * 119.69185 * 0.26023 * 15 6 5 17 17 C 1.41180 * 120.23111 * 179.97438 * 16 15 6 18 18 H 1.08000 * 119.99943 * 150.05796 * 17 16 15 19 19 C 1.39907 * 120.00467 * 330.06129 * 17 16 15 20 20 N 1.30874 * 120.00586 * 161.80116 * 19 17 16 21 21 Si 1.86800 * 119.99659 * 341.80485 * 19 17 16 22 22 H 1.48507 * 109.47313 * 95.40520 * 21 19 17 23 23 H 1.48499 * 109.47438 * 215.40473 * 21 19 17 24 24 H 1.48507 * 109.47159 * 335.40569 * 21 19 17 25 25 H 1.08997 * 109.46836 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46887 * 300.00065 * 1 2 3 27 27 H 1.09004 * 109.47212 * 59.99818 * 1 2 3 28 28 H 1.08002 * 119.84480 * 0.04064 * 4 3 2 29 29 H 1.08001 * 119.76380 * 180.27050 * 5 4 3 30 30 H 1.07997 * 120.06571 * 359.97438 * 8 7 6 31 31 H 1.08003 * 119.94304 * 179.97438 * 9 8 7 32 32 H 1.07997 * 119.88032 * 179.72515 * 10 9 8 33 33 H 1.09007 * 109.47119 * 270.25412 * 12 11 10 34 34 H 1.08999 * 109.47174 * 30.24842 * 12 11 10 35 35 H 1.09000 * 109.47568 * 150.25601 * 12 11 10 36 36 H 1.08998 * 109.47311 * 270.02850 * 14 13 11 37 37 H 1.09003 * 109.46548 * 30.02640 * 14 13 11 38 38 H 1.09004 * 109.47199 * 150.02492 * 14 13 11 39 39 H 1.08003 * 120.15284 * 180.27915 * 15 6 5 40 40 H 0.96994 * 120.00368 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2919 2.3711 -0.0005 5 6 1.9137 3.6033 0.0044 6 6 3.3101 3.6935 -0.0009 7 6 3.9657 5.0245 -0.0009 8 6 4.9695 5.3097 0.9230 9 6 5.5762 6.5491 0.9181 10 6 5.1861 7.5095 0.0019 11 6 4.1942 7.2302 -0.9206 12 6 3.7787 8.2794 -1.9192 13 6 3.5805 5.9938 -0.9248 14 6 2.4955 5.6929 -1.9265 15 6 4.0823 2.5424 -0.0003 16 6 3.4563 1.2843 0.0001 17 6 4.2318 0.1045 0.0002 18 1 3.8512 -0.7918 0.4673 19 6 5.4932 0.0964 -0.6048 20 7 6.3534 -0.8456 -0.3122 21 14 5.9500 1.4303 -1.8301 22 1 6.6928 2.5104 -1.1322 23 1 6.8052 0.8509 -2.8969 24 1 4.7149 1.9903 -2.4355 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.2134 2.3132 -0.0003 29 1 1.3182 4.5043 0.0084 30 1 5.2720 4.5622 1.6413 31 1 6.3539 6.7714 1.6338 32 1 5.6605 8.4797 0.0046 33 1 2.9720 8.8809 -1.5000 34 1 4.6297 8.9213 -2.1471 35 1 3.4337 7.7953 -2.8328 36 1 1.5278 5.9690 -1.5079 37 1 2.6737 6.2642 -2.8376 38 1 2.5005 4.6279 -2.1586 39 1 5.1601 2.6121 0.0001 40 1 7.2278 -0.8514 -0.7319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239714969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:09 Heat of formation + Delta-G solvation = -6.179915 kcal Electronic energy + Delta-G solvation = -21732.911354 eV Core-core repulsion = 18669.992332 eV Total energy + Delta-G solvation = -3062.919022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.58652 -38.62712 -36.30556 -33.78043 -33.14138 -32.15102 -30.47668 -28.80168 -27.12631 -26.49032 -26.02152 -24.96601 -22.16598 -21.34898 -20.34441 -19.49584 -17.43954 -16.97815 -15.91794 -15.49889 -15.16141 -14.84734 -14.72035 -14.44550 -13.99866 -13.63921 -13.27497 -12.99523 -12.68486 -12.67170 -12.59268 -12.25713 -12.11970 -11.73742 -11.61513 -11.53655 -11.43324 -11.20040 -10.78089 -10.71432 -10.55561 -10.39276 -10.02772 -9.73717 -9.67369 -9.12625 -8.36231 -8.23743 -7.74067 -6.98025 -6.90100 -4.36412 1.55037 1.70801 2.55026 2.62824 3.15445 3.22512 3.34550 4.01316 4.07893 4.34042 4.48073 5.04343 5.09465 5.22474 5.31706 5.38533 5.45921 5.59511 5.64014 5.65933 5.72358 5.83110 5.88129 5.89301 5.94154 5.99427 6.06599 6.15025 6.23741 6.35603 6.52697 6.57324 6.73734 6.80128 6.86228 6.89664 7.05759 7.18387 7.31490 7.44266 7.55670 7.74490 7.96242 8.21447 8.42528 8.79821 8.81972 10.11929 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015204 B = 0.006657 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.157854 B = 4205.304793 C = 5329.776425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.307 6.307 3 C 0.037 3.963 4 C -0.175 4.175 5 C -0.187 4.187 6 C -0.045 4.045 7 C -0.017 4.017 8 C -0.115 4.115 9 C -0.124 4.124 10 C -0.132 4.132 11 C -0.094 4.094 12 C -0.113 4.113 13 C -0.080 4.080 14 C -0.115 4.115 15 C -0.201 4.201 16 C 0.078 3.922 17 C -0.430 4.430 18 H 0.096 0.904 19 C 0.084 3.916 20 N -0.808 5.808 21 Si 0.902 3.098 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.244 1.244 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 12.347 -1.936 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.221 6.221 3 C -0.007 4.007 4 C -0.194 4.194 5 C -0.207 4.207 6 C -0.045 4.045 7 C -0.017 4.017 8 C -0.133 4.133 9 C -0.142 4.142 10 C -0.150 4.150 11 C -0.094 4.094 12 C -0.169 4.169 13 C -0.080 4.080 14 C -0.172 4.172 15 C -0.220 4.220 16 C 0.075 3.925 17 C -0.458 4.458 18 H 0.114 0.886 19 C -0.134 4.134 20 N -0.433 5.433 21 Si 0.729 3.271 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.167 1.167 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.701 11.968 -1.949 13.005 hybrid contribution 0.181 0.623 -0.380 0.752 sum -4.520 12.590 -2.329 13.579 Atomic orbital electron populations 1.22796 0.81348 1.02128 1.00051 1.86013 1.18513 1.27890 1.89643 1.19238 0.92072 0.82894 1.06530 1.20628 0.97777 0.92594 1.08410 1.20148 0.92566 0.95591 1.12371 1.18234 0.92943 0.90341 1.02969 1.18976 0.95013 0.93316 0.94355 1.21307 0.96198 0.96800 0.98970 1.20985 1.00143 0.93792 0.99270 1.20886 0.98479 0.99083 0.96582 1.19616 0.97300 0.94728 0.97738 1.20807 1.01253 0.97010 0.97832 1.19797 0.98226 0.92781 0.97238 1.20932 0.96304 1.03285 0.96635 1.20815 0.97873 0.90853 1.12500 1.17053 0.88479 0.93284 0.93714 1.19296 0.98164 0.97750 1.30636 0.88641 1.26101 0.94840 0.96085 0.96360 1.69706 1.05912 1.31871 1.35762 0.86432 0.80009 0.80379 0.80316 1.19438 1.21767 1.16727 0.89726 0.94000 0.93959 0.87888 0.88318 0.85861 0.86483 0.86773 0.91581 0.92076 0.91287 0.91482 0.92146 0.90441 0.87375 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.31 -6.89 9.83 -18.51 -0.18 -7.07 16 3 C 0.04 0.88 6.72 -38.29 -0.26 0.63 16 4 C -0.17 -3.63 9.01 -39.56 -0.36 -3.99 16 5 C -0.19 -3.82 7.90 -39.02 -0.31 -4.13 16 6 C -0.04 -0.97 4.71 -104.95 -0.49 -1.46 16 7 C -0.02 -0.32 5.46 -104.89 -0.57 -0.90 16 8 C -0.11 -2.08 9.49 -39.25 -0.37 -2.45 16 9 C -0.12 -1.90 10.03 -39.63 -0.40 -2.29 16 10 C -0.13 -1.89 9.69 -39.51 -0.38 -2.27 16 11 C -0.09 -1.39 5.87 -104.67 -0.61 -2.01 16 12 C -0.11 -1.26 9.60 36.00 0.35 -0.92 16 13 C -0.08 -1.38 5.87 -104.29 -0.61 -1.99 16 14 C -0.12 -1.76 8.04 36.01 0.29 -1.47 16 15 C -0.20 -4.87 6.60 -38.59 -0.25 -5.13 16 16 C 0.08 2.01 5.11 -106.73 -0.55 1.46 16 17 C -0.43 -11.92 9.18 -37.84 -0.35 -12.27 16 18 H 0.10 2.83 7.89 -52.49 -0.41 2.41 16 19 C 0.08 2.26 5.40 -17.34 -0.09 2.17 16 20 N -0.81 -21.92 13.93 55.55 0.77 -21.15 16 21 Si 0.90 21.39 24.52 -169.99 -4.17 17.23 16 22 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.24 -5.93 6.86 56.52 0.39 -5.54 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 27 H 0.04 0.62 7.65 -51.93 -0.40 0.23 16 28 H 0.10 1.83 6.27 -52.49 -0.33 1.50 16 29 H 0.10 1.79 6.85 -52.49 -0.36 1.43 16 30 H 0.12 2.21 8.03 -52.49 -0.42 1.79 16 31 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.07 0.74 5.94 -51.93 -0.31 0.43 16 36 H 0.07 0.93 7.50 -51.93 -0.39 0.54 16 37 H 0.06 0.78 5.94 -51.93 -0.31 0.47 16 38 H 0.08 1.35 6.46 -51.93 -0.34 1.02 16 39 H 0.11 2.67 4.71 -52.48 -0.25 2.42 16 40 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -29.16 321.18 -7.91 -37.07 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.19 Total: 4.56 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: -3.98 Total: -35.48 kcal Atomic # 7 Polarization: -21.92 SS G_CDS: 0.77 Total: -21.15 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.18 Total: -7.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.17 Total: 17.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.16 -7.91 -37.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239714969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.891 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds