Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35875 * 117.00034 * 2 1 4 4 C 1.39469 * 119.77508 * 359.97438 * 3 2 1 5 5 C 1.37948 * 120.61439 * 180.02562 * 4 3 2 6 6 C 1.39173 * 120.16882 * 0.02562 * 5 4 3 7 7 C 1.47827 * 120.22204 * 179.97438 * 6 5 4 8 8 C 1.39692 * 120.15396 * 65.22759 * 7 6 5 9 9 C 1.37894 * 119.84881 * 180.30324 * 8 7 6 10 10 C 1.38417 * 120.15327 * 359.46543 * 9 8 7 11 11 C 1.50701 * 119.85038 * 180.23559 * 10 9 8 12 12 C 1.38384 * 120.30353 * 0.25850 * 10 9 8 13 13 C 1.37944 * 120.14844 * 0.02562 * 12 10 9 14 14 C 1.50699 * 120.07190 * 179.97438 * 13 12 10 15 15 C 1.41901 * 119.55701 * 0.22687 * 6 5 4 16 16 C 1.40890 * 120.29807 * 179.75109 * 15 6 5 17 17 H 1.08001 * 120.00445 * 24.82821 * 16 15 6 18 18 C 1.40048 * 119.99891 * 204.84057 * 16 15 6 19 19 N 1.30781 * 119.99942 * 17.39387 * 18 16 15 20 20 Si 1.86800 * 119.99841 * 197.39786 * 18 16 15 21 21 H 1.48498 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46869 * 119.99592 * 20 18 16 23 23 H 1.48496 * 109.47209 * 239.99346 * 20 18 16 24 24 C 1.37924 * 119.78440 * 180.02562 * 3 2 1 25 25 H 1.08993 * 109.47565 * 299.99664 * 1 2 3 26 26 H 1.08997 * 109.47350 * 60.00572 * 1 2 3 27 27 H 1.09010 * 109.46658 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.69477 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.91824 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.07498 * 0.04283 * 8 7 6 31 31 H 1.08007 * 119.92648 * 179.75353 * 9 8 7 32 32 H 1.09003 * 109.46862 * 90.00742 * 11 10 9 33 33 H 1.08998 * 109.47269 * 209.99658 * 11 10 9 34 34 H 1.08997 * 109.47496 * 330.00351 * 11 10 9 35 35 H 1.07999 * 119.92621 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47150 * 90.00447 * 14 13 12 37 37 H 1.09008 * 109.46851 * 209.99756 * 14 13 12 38 38 H 1.09000 * 109.47520 * 329.99607 * 14 13 12 39 39 H 0.97004 * 119.99795 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.09103 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2817 2.3773 -0.0005 5 6 1.8899 3.6155 -0.0011 6 6 3.2782 3.7128 -0.0016 7 6 3.9312 5.0390 -0.0028 8 6 3.7875 5.8929 1.0934 9 6 4.3942 7.1311 1.0830 10 6 5.1534 7.5243 -0.0055 11 6 5.8178 8.8770 -0.0074 12 6 5.3047 6.6812 -1.0924 13 6 4.6985 5.4421 -1.0977 14 6 4.8640 4.5256 -2.2825 15 6 4.0628 2.5304 -0.0065 16 6 5.4693 2.6107 -0.0124 17 1 5.9619 3.4884 0.3793 18 6 6.2290 1.5524 -0.5266 19 7 5.6667 0.6580 -1.2975 20 14 8.0452 1.4183 -0.1111 21 1 8.4357 2.5467 0.7718 22 1 8.2997 0.1323 0.5866 23 1 8.8442 1.4694 -1.3617 24 6 3.4235 1.2776 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.2038 2.3109 -0.0005 29 1 1.2872 4.5117 -0.0011 30 1 3.1991 5.5856 1.9453 31 1 4.2806 7.7939 1.9282 32 1 6.8140 8.7930 0.4270 33 1 5.8977 9.2411 -1.0316 34 1 5.2224 9.5751 0.5811 35 1 5.8981 6.9943 -1.9387 36 1 5.7396 3.8938 -2.1335 37 1 3.9774 3.8996 -2.3841 38 1 4.9944 5.1203 -3.1866 39 1 6.1930 -0.0748 -1.6539 40 1 4.0097 0.3706 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239811502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = -12.998688 kcal Electronic energy + Delta-G solvation = -21807.725749 eV Core-core repulsion = 18744.511042 eV Total energy + Delta-G solvation = -3063.214706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.16633 -38.40089 -36.30191 -33.65524 -32.85978 -31.35805 -29.72328 -29.10602 -27.01787 -26.40080 -25.43266 -24.69984 -21.77333 -20.83146 -20.60935 -19.15904 -17.71517 -16.15061 -15.76305 -15.19144 -14.91763 -14.77318 -14.61258 -14.22526 -13.51863 -13.35784 -13.03454 -12.88299 -12.50875 -12.43656 -12.20425 -12.11019 -11.76591 -11.46497 -11.36200 -11.21923 -11.12678 -11.05906 -10.79452 -10.66032 -10.33608 -10.31008 -9.83821 -9.72135 -9.54252 -9.16432 -8.05459 -7.65630 -7.50656 -6.94780 -6.65460 -4.43268 2.00499 2.13867 2.72691 2.97699 3.05547 3.11340 3.17989 3.88653 4.31223 4.45740 4.57280 5.35349 5.37071 5.53724 5.62435 5.66037 5.72904 5.81756 5.84605 5.86895 5.91002 6.01938 6.10168 6.18285 6.29387 6.36753 6.43250 6.68230 6.72100 6.79733 6.88101 6.99711 7.11446 7.19415 7.21321 7.26517 7.40606 7.55778 7.68961 7.72192 7.85160 7.99740 8.04793 8.35937 8.72677 8.81432 8.90280 10.08477 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.007348 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.895995 B = 3809.855720 C = 5496.040435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.132 3.868 4 C -0.319 4.319 5 C -0.042 4.042 6 C -0.202 4.202 7 C 0.016 3.984 8 C -0.119 4.119 9 C -0.133 4.133 10 C -0.112 4.112 11 C -0.105 4.105 12 C -0.128 4.128 13 C -0.059 4.059 14 C -0.103 4.103 15 C 0.156 3.844 16 C -0.438 4.438 17 H 0.083 0.917 18 C 0.078 3.922 19 N -0.776 5.776 20 Si 0.900 3.100 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.196 4.196 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.282 0.718 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 6.179 0.667 6.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.245 6.245 3 C 0.088 3.912 4 C -0.339 4.339 5 C -0.061 4.061 6 C -0.203 4.203 7 C 0.016 3.984 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.112 4.112 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.059 4.059 14 C -0.160 4.160 15 C 0.153 3.847 16 C -0.467 4.467 17 H 0.101 0.899 18 C -0.142 4.142 19 N -0.400 5.400 20 Si 0.724 3.276 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.216 4.216 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.554 5.781 0.509 6.008 hybrid contribution 0.485 -0.029 0.161 0.512 sum -1.069 5.752 0.670 5.889 Atomic orbital electron populations 1.22748 0.80824 1.01802 1.00496 1.86002 1.19465 1.29190 1.89795 1.18996 0.92466 0.82422 0.97279 1.20326 0.97243 0.92485 1.23849 1.20302 0.93292 0.95162 0.97325 1.18478 0.91946 0.91129 1.18767 1.18649 0.94775 0.92853 0.92079 1.21269 1.00588 0.93906 0.97993 1.20727 0.99867 0.96780 0.97766 1.19707 1.00037 0.96353 0.95116 1.20679 0.99864 0.93924 1.01719 1.20723 1.01374 0.94393 0.98147 1.20084 0.95961 0.93794 0.96074 1.20748 1.04385 0.97834 0.93010 1.17178 0.92671 0.88725 0.86109 1.19509 0.90960 1.02071 1.34156 0.89895 1.25955 1.01079 0.94450 0.92750 1.69829 1.38422 1.10620 1.21162 0.86373 0.82147 0.79578 0.79510 1.18168 1.19581 1.19836 1.20532 0.89329 0.99132 1.12628 0.93746 0.93679 0.89972 0.88719 0.89097 0.86873 0.87378 0.92026 0.92301 0.92357 0.87205 0.89822 0.91131 0.94126 0.90663 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -7.26 10.48 -19.35 -0.20 -7.46 16 3 C 0.13 3.17 6.67 -39.24 -0.26 2.91 16 4 C -0.32 -7.10 9.02 -39.23 -0.35 -7.45 16 5 C -0.04 -0.95 9.71 -39.34 -0.38 -1.33 16 6 C -0.20 -4.73 4.18 -104.23 -0.44 -5.16 16 7 C 0.02 0.35 4.37 -104.91 -0.46 -0.11 16 8 C -0.12 -2.30 9.75 -39.16 -0.38 -2.69 16 9 C -0.13 -2.27 9.68 -39.64 -0.38 -2.65 16 10 C -0.11 -1.85 5.89 -104.50 -0.62 -2.46 16 11 C -0.11 -1.32 10.01 36.01 0.36 -0.96 16 12 C -0.13 -2.29 9.34 -39.64 -0.37 -2.66 16 13 C -0.06 -1.20 5.30 -104.20 -0.55 -1.76 16 14 C -0.10 -2.10 8.53 36.01 0.31 -1.80 16 15 C 0.16 3.97 5.01 -106.58 -0.53 3.43 16 16 C -0.44 -10.95 6.06 -37.90 -0.23 -11.18 16 17 H 0.08 2.10 7.05 -52.49 -0.37 1.73 16 18 C 0.08 1.86 5.14 -17.32 -0.09 1.77 16 19 N -0.78 -19.20 10.96 55.55 0.61 -18.60 16 20 Si 0.90 18.26 29.59 -169.99 -5.03 13.23 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.20 -5.10 8.60 -38.79 -0.33 -5.43 16 25 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 26 H 0.04 0.69 7.64 -51.93 -0.40 0.30 16 27 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.09 1.86 6.25 -52.49 -0.33 1.53 16 29 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.11 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.08 1.82 6.83 -51.93 -0.35 1.47 16 37 H 0.07 1.58 6.93 -51.92 -0.36 1.22 16 38 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 40 H 0.13 3.44 6.18 -52.49 -0.32 3.12 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -27.02 329.03 -8.85 -35.88 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.46 Total: 7.92 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: -3.72 Total: -35.93 kcal Atomic # 7 Polarization: -19.20 SS G_CDS: 0.61 Total: -18.60 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.20 Total: -7.46 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.02 -8.85 -35.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239811502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.877 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds