Wall clock time and date at job start Tue Mar 31 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35875 * 117.00034 * 2 1 4 4 C 1.39469 * 119.77508 * 359.97438 * 3 2 1 5 5 C 1.37948 * 120.61439 * 180.02562 * 4 3 2 6 6 C 1.39173 * 120.16882 * 0.02562 * 5 4 3 7 7 C 1.47827 * 120.22204 * 179.97438 * 6 5 4 8 8 C 1.39692 * 120.15396 * 65.22759 * 7 6 5 9 9 C 1.37894 * 119.84881 * 180.30324 * 8 7 6 10 10 C 1.38417 * 120.15327 * 359.46543 * 9 8 7 11 11 C 1.50701 * 119.85038 * 180.23559 * 10 9 8 12 12 C 1.38384 * 120.30353 * 0.25850 * 10 9 8 13 13 C 1.37944 * 120.14844 * 0.02562 * 12 10 9 14 14 C 1.50699 * 120.07190 * 179.97438 * 13 12 10 15 15 C 1.41901 * 119.55701 * 0.22687 * 6 5 4 16 16 C 1.40890 * 120.29807 * 179.75109 * 15 6 5 17 17 H 1.08001 * 120.00445 * 24.82821 * 16 15 6 18 18 C 1.40048 * 119.99891 * 204.84057 * 16 15 6 19 19 N 1.30781 * 119.99942 * 17.39387 * 18 16 15 20 20 Si 1.86800 * 119.99841 * 197.39786 * 18 16 15 21 21 H 1.48498 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46869 * 119.99592 * 20 18 16 23 23 H 1.48496 * 109.47209 * 239.99346 * 20 18 16 24 24 C 1.37924 * 119.78440 * 180.02562 * 3 2 1 25 25 H 1.08993 * 109.47565 * 299.99664 * 1 2 3 26 26 H 1.08997 * 109.47350 * 60.00572 * 1 2 3 27 27 H 1.09010 * 109.46658 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.69477 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.91824 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.07498 * 0.04283 * 8 7 6 31 31 H 1.08007 * 119.92648 * 179.75353 * 9 8 7 32 32 H 1.09003 * 109.46862 * 90.00742 * 11 10 9 33 33 H 1.08998 * 109.47269 * 209.99658 * 11 10 9 34 34 H 1.08997 * 109.47496 * 330.00351 * 11 10 9 35 35 H 1.07999 * 119.92621 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47150 * 90.00447 * 14 13 12 37 37 H 1.09008 * 109.46851 * 209.99756 * 14 13 12 38 38 H 1.09000 * 109.47520 * 329.99607 * 14 13 12 39 39 H 0.97004 * 119.99795 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.09103 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2817 2.3773 -0.0005 5 6 1.8899 3.6155 -0.0011 6 6 3.2782 3.7128 -0.0016 7 6 3.9312 5.0390 -0.0028 8 6 3.7875 5.8929 1.0934 9 6 4.3942 7.1311 1.0830 10 6 5.1534 7.5243 -0.0055 11 6 5.8178 8.8770 -0.0074 12 6 5.3047 6.6812 -1.0924 13 6 4.6985 5.4421 -1.0977 14 6 4.8640 4.5256 -2.2825 15 6 4.0628 2.5304 -0.0065 16 6 5.4693 2.6107 -0.0124 17 1 5.9619 3.4884 0.3793 18 6 6.2290 1.5524 -0.5266 19 7 5.6667 0.6580 -1.2975 20 14 8.0452 1.4183 -0.1111 21 1 8.4357 2.5467 0.7718 22 1 8.2997 0.1323 0.5866 23 1 8.8442 1.4694 -1.3617 24 6 3.4235 1.2776 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.2038 2.3109 -0.0005 29 1 1.2872 4.5117 -0.0011 30 1 3.1991 5.5856 1.9453 31 1 4.2806 7.7939 1.9282 32 1 6.8140 8.7930 0.4270 33 1 5.8977 9.2411 -1.0316 34 1 5.2224 9.5751 0.5811 35 1 5.8981 6.9943 -1.9387 36 1 5.7396 3.8938 -2.1335 37 1 3.9774 3.8996 -2.3841 38 1 4.9944 5.1203 -3.1866 39 1 6.1930 -0.0748 -1.6539 40 1 4.0097 0.3706 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239811502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:15 Heat of formation + Delta-G solvation = -24.753612 kcal Electronic energy + Delta-G solvation = -21808.235480 eV Core-core repulsion = 18744.511042 eV Total energy + Delta-G solvation = -3063.724438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77564 -39.96429 -37.97091 -35.45620 -34.29190 -32.83120 -31.54221 -30.65795 -28.45623 -27.88198 -27.05727 -26.27465 -23.34767 -22.53407 -22.19521 -20.67317 -19.48507 -17.95790 -17.29457 -16.86953 -16.48983 -16.33835 -16.11583 -15.62298 -15.04497 -14.86695 -14.62376 -14.37089 -14.05660 -13.86146 -13.74296 -13.56676 -13.25935 -12.93736 -12.87696 -12.81365 -12.71591 -12.59602 -12.34896 -12.19755 -11.94138 -11.78208 -11.45027 -11.37417 -11.28368 -10.96150 -9.49112 -9.37132 -9.15176 -8.74492 -8.41009 -6.31420 0.52795 0.69763 0.97787 1.19051 1.36616 1.48897 1.50687 2.18566 2.69907 2.79167 3.03051 3.70562 4.11517 4.16473 4.25061 4.26738 4.38017 4.45731 4.50956 4.55316 4.61950 4.67360 4.73795 4.89249 4.93369 4.98407 5.02278 5.06921 5.13539 5.15994 5.23670 5.32560 5.45015 5.56045 5.59290 5.68638 5.84726 5.90769 5.98597 6.03021 6.16012 6.22506 6.38307 6.52492 6.92477 6.95869 7.08014 8.30771 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.007348 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.895995 B = 3809.855720 C = 5496.040435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.127 3.873 4 C -0.318 4.318 5 C -0.051 4.051 6 C -0.203 4.203 7 C -0.016 4.016 8 C -0.130 4.130 9 C -0.131 4.131 10 C -0.105 4.105 11 C -0.103 4.103 12 C -0.133 4.133 13 C -0.079 4.079 14 C -0.091 4.091 15 C 0.134 3.866 16 C -0.454 4.454 17 H 0.072 0.928 18 C 0.043 3.957 19 N -0.808 5.808 20 Si 0.964 3.036 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.263 1.263 24 C -0.232 4.232 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.288 0.712 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 8.580 1.048 8.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.083 3.917 4 C -0.337 4.337 5 C -0.069 4.069 6 C -0.204 4.204 7 C -0.016 4.016 8 C -0.148 4.148 9 C -0.149 4.149 10 C -0.105 4.105 11 C -0.160 4.160 12 C -0.151 4.151 13 C -0.079 4.079 14 C -0.148 4.148 15 C 0.131 3.869 16 C -0.482 4.482 17 H 0.090 0.910 18 C -0.174 4.174 19 N -0.433 5.433 20 Si 0.785 3.215 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.187 1.187 24 C -0.252 4.252 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.467 8.182 0.889 8.359 hybrid contribution 0.317 -0.709 0.048 0.779 sum -1.150 7.472 0.937 7.618 Atomic orbital electron populations 1.23127 0.77701 1.04460 1.01418 1.85964 1.22722 1.28449 1.89573 1.19093 0.92207 0.83782 0.96664 1.20621 0.98616 0.91790 1.22692 1.20635 0.93301 0.96129 0.96848 1.18777 0.92556 0.91782 1.17298 1.18708 0.96618 0.92592 0.93723 1.21388 1.01207 0.94760 0.97426 1.21093 0.98753 0.96090 0.98937 1.20210 0.98691 0.97742 0.93898 1.20751 1.00266 0.91641 1.03298 1.21007 1.01020 0.93466 0.99559 1.20152 0.96978 0.95002 0.95775 1.20565 1.01819 0.97601 0.94776 1.17461 0.93381 0.89369 0.86646 1.19469 0.91160 1.02357 1.35222 0.90998 1.26647 1.04875 0.93785 0.92131 1.69891 1.40067 1.11306 1.22030 0.85421 0.77283 0.79345 0.79445 1.18355 1.19125 1.18723 1.20485 0.90504 0.98624 1.15594 0.92510 0.92881 0.86630 0.85845 0.86861 0.86687 0.84181 0.90833 0.90853 0.90420 0.84979 0.91992 0.94294 0.91416 0.90136 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.80 113.37 1.11 1.96 16 2 O -0.35 -15.70 10.48 -92.14 -0.97 -16.66 16 3 C 0.13 6.27 6.67 22.49 0.15 6.42 16 4 C -0.32 -14.12 9.02 22.50 0.20 -13.92 16 5 C -0.05 -2.29 9.71 22.43 0.22 -2.07 16 6 C -0.20 -9.81 4.18 -19.61 -0.08 -9.89 16 7 C -0.02 -0.71 4.37 -20.05 -0.09 -0.80 16 8 C -0.13 -4.90 9.75 22.54 0.22 -4.68 16 9 C -0.13 -4.09 9.68 22.23 0.22 -3.87 16 10 C -0.11 -3.14 5.89 -19.79 -0.12 -3.25 16 11 C -0.10 -2.12 10.01 71.24 0.71 -1.41 16 12 C -0.13 -4.47 9.34 22.23 0.21 -4.27 16 13 C -0.08 -3.22 5.30 -19.59 -0.10 -3.32 16 14 C -0.09 -3.82 8.53 71.24 0.61 -3.21 16 15 C 0.13 7.18 5.01 -21.14 -0.11 7.07 16 16 C -0.45 -23.81 6.06 23.36 0.14 -23.66 16 17 H 0.07 3.82 7.05 -2.91 -0.02 3.80 16 18 C 0.04 2.12 5.14 85.29 0.44 2.56 16 19 N -0.81 -42.10 10.96 21.84 0.24 -41.86 16 20 Si 0.96 38.47 29.59 68.60 2.03 40.50 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 24 C -0.23 -12.75 8.60 22.78 0.20 -12.55 16 25 H 0.06 1.61 7.65 -2.39 -0.02 1.59 16 26 H 0.05 1.55 7.64 -2.39 -0.02 1.53 16 27 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 28 H 0.12 4.65 6.25 -2.91 -0.02 4.63 16 29 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.06 2.83 6.83 -2.39 -0.02 2.81 16 37 H 0.04 1.83 6.93 -2.38 -0.02 1.81 16 38 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 39 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 40 H 0.10 5.95 6.18 -2.91 -0.02 5.93 16 Total: -1.00 -61.90 329.03 6.26 -55.63 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 1.04 Total: 31.28 kcal Atomic # 6 Polarization: -72.81 SS G_CDS: 3.93 Total: -68.88 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.24 Total: -41.86 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.97 Total: -16.66 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -61.90 6.26 -55.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239811502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.879 kcal (2) G-P(sol) polarization free energy of solvation -61.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds