Wall clock time and date at job start Tue Mar 31 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47015 * 2 1 4 4 C 1.50701 * 109.47164 * 119.99499 * 2 1 3 5 5 C 1.38027 * 120.06112 * 300.00483 * 4 2 1 6 6 C 1.38314 * 120.12319 * 179.71867 * 5 4 2 7 7 C 1.38359 * 120.25587 * 0.25300 * 6 5 4 8 8 C 1.37980 * 120.12325 * 0.02562 * 7 6 5 9 9 C 1.39366 * 120.06507 * 120.25073 * 4 2 1 10 10 C 1.48289 * 120.12846 * 0.02768 * 9 4 2 11 11 C 1.39285 * 120.16047 * 244.98006 * 10 9 4 12 12 C 1.38018 * 119.94452 * 179.67346 * 11 10 9 13 13 C 1.38452 * 120.26593 * 0.61966 * 12 11 10 14 14 C 1.38107 * 120.32684 * 359.67898 * 13 12 11 15 15 C 1.38765 * 120.04610 * 359.97438 * 14 13 12 16 16 O 1.35664 * 120.12871 * 180.02562 * 15 14 13 17 17 C 1.34811 * 117.00419 * 354.39007 * 16 15 14 18 18 H 1.07994 * 120.00039 * 5.20178 * 17 16 15 19 19 C 1.38650 * 119.99843 * 185.21158 * 17 16 15 20 20 N 1.31549 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 59.99027 * 21 19 17 23 23 H 1.48493 * 109.47287 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46984 * 299.99484 * 21 19 17 25 25 H 1.08999 * 109.47288 * 300.00760 * 1 2 3 26 26 H 1.09002 * 109.46974 * 60.00171 * 1 2 3 27 27 H 1.08993 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47547 * 239.99890 * 2 1 3 29 29 H 1.09000 * 109.46911 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46427 * 299.99617 * 3 2 1 31 31 H 1.08993 * 109.47053 * 59.99588 * 3 2 1 32 32 H 1.07995 * 119.93901 * 359.97438 * 5 4 2 33 33 H 1.07998 * 119.87464 * 180.22822 * 6 5 4 34 34 H 1.07999 * 119.93885 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.06504 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.02742 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.86872 * 180.34412 * 12 11 10 38 38 H 1.07999 * 119.83530 * 179.69585 * 13 12 11 39 39 H 1.07994 * 119.97564 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00201 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6996 -0.2398 2.4847 6 6 2.1551 -0.8941 3.6150 7 6 2.9506 -2.0199 3.4958 8 6 3.2943 -2.4959 2.2471 9 6 2.8380 -1.8405 1.1043 10 6 3.2039 -2.3473 -0.2403 11 6 2.7553 -3.5962 -0.6634 12 6 3.0930 -4.0607 -1.9185 13 6 3.8874 -3.2955 -2.7553 14 6 4.3434 -2.0582 -2.3448 15 6 4.0061 -1.5752 -1.0884 16 8 4.4527 -0.3598 -0.6836 17 6 5.3147 0.2786 -1.5002 18 1 5.5542 -0.1403 -2.4664 19 6 5.8939 1.4729 -1.0995 20 7 5.6019 1.9833 0.0773 21 14 7.0878 2.3580 -2.2312 22 1 6.4025 2.7005 -3.5034 23 1 7.5624 3.6023 -1.5745 24 1 8.2472 1.4748 -2.5158 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.0790 0.6385 2.5837 33 1 1.8893 -0.5246 4.5943 34 1 3.3031 -2.5270 4.3817 35 1 3.9155 -3.3745 2.1552 36 1 2.1397 -4.1986 -0.0118 37 1 2.7399 -5.0269 -2.2474 38 1 4.1514 -3.6679 -3.7341 39 1 4.9624 -1.4659 -3.0023 40 1 6.0069 2.8191 0.3575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239867395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:29 Heat of formation + Delta-G solvation = 8.944511 kcal Electronic energy + Delta-G solvation = -22467.946454 eV Core-core repulsion = 19405.683276 eV Total energy + Delta-G solvation = -3062.263178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.68346 -38.20897 -36.31571 -34.64492 -32.37827 -31.86815 -29.27046 -29.10357 -27.91139 -26.37311 -25.33786 -22.85248 -22.74755 -21.31728 -20.33342 -19.22600 -17.93806 -17.11163 -15.97429 -15.21412 -14.77246 -14.54904 -14.47355 -13.97350 -13.60185 -13.41213 -13.37985 -12.99042 -12.78126 -12.65537 -12.46616 -11.80076 -11.67485 -11.62306 -11.35502 -11.33447 -11.09897 -10.86890 -10.76195 -10.54039 -10.47401 -10.24940 -9.97817 -9.87322 -9.32413 -8.82133 -8.38729 -8.10841 -7.78934 -7.13721 -6.44977 -4.02983 1.79354 2.03805 2.28752 2.38877 3.12357 3.13580 3.15574 3.95305 4.36142 4.56561 5.06318 5.23353 5.32096 5.38755 5.44655 5.53860 5.66332 5.72792 5.80318 5.86588 5.91832 6.06064 6.10508 6.16081 6.29154 6.31698 6.42446 6.51475 6.59980 6.63081 6.69349 6.74853 6.80645 6.93661 7.05055 7.07922 7.12968 7.22962 7.34279 7.36025 7.46289 7.60317 7.65364 7.81701 8.01403 8.99887 9.69608 10.70742 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.007860 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.142935 B = 3561.629672 C = 4493.072274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C -0.150 4.150 4 C -0.041 4.041 5 C -0.116 4.116 6 C -0.129 4.129 7 C -0.132 4.132 8 C -0.111 4.111 9 C -0.009 4.009 10 C -0.131 4.131 11 C -0.062 4.062 12 C -0.216 4.216 13 C -0.071 4.071 14 C -0.237 4.237 15 C 0.166 3.834 16 O -0.157 6.157 17 C -0.394 4.394 18 H 0.089 0.911 19 C 0.046 3.954 20 N -0.852 5.852 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.271 1.271 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 -5.176 1.267 8.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.207 4.207 4 C -0.041 4.041 5 C -0.134 4.134 6 C -0.147 4.147 7 C -0.150 4.150 8 C -0.129 4.129 9 C -0.009 4.009 10 C -0.132 4.132 11 C -0.080 4.080 12 C -0.235 4.235 13 C -0.090 4.090 14 C -0.256 4.256 15 C 0.111 3.889 16 O -0.059 6.059 17 C -0.471 4.471 18 H 0.106 0.894 19 C -0.160 4.160 20 N -0.486 5.486 21 Si 0.759 3.241 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.197 1.197 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.145 0.855 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.248 -4.794 1.616 8.040 hybrid contribution 0.763 0.425 -0.649 1.088 sum -5.486 -4.369 0.967 7.079 Atomic orbital electron populations 1.21867 0.95893 1.00950 1.01048 1.20074 0.93946 0.97112 0.95967 1.21977 1.06333 0.93271 0.99141 1.19868 0.95747 0.93921 0.94543 1.20794 1.01035 0.99537 0.92038 1.20969 0.99436 0.96466 0.97874 1.20871 0.99815 0.97512 0.96824 1.21117 0.99844 1.00104 0.91859 1.18490 0.95966 0.94506 0.91892 1.17808 1.06113 0.95425 0.93898 1.20687 0.98035 0.93664 0.95632 1.20503 1.06231 1.00920 0.95843 1.20796 0.96048 0.93922 0.98205 1.21120 1.08225 0.98475 0.97806 1.19295 0.92099 0.86092 0.91404 1.84013 1.53568 1.23400 1.44968 1.21250 1.21913 1.04751 0.99142 0.89374 1.25174 0.97727 0.96294 0.96766 1.69982 1.41147 1.19269 1.18203 0.85884 0.79997 0.78799 0.79403 1.19609 1.20340 1.19658 0.93141 0.92986 0.93282 0.90085 0.87203 0.94176 0.94404 0.86799 0.87038 0.86940 0.86707 0.87085 0.87611 0.87588 0.85463 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.01 37.16 0.33 -1.91 16 2 C -0.05 -1.03 2.25 -91.77 -0.21 -1.24 16 3 C -0.15 -3.14 8.90 37.16 0.33 -2.81 16 4 C -0.04 -0.81 4.60 -104.28 -0.48 -1.29 16 5 C -0.12 -2.10 8.71 -39.63 -0.35 -2.44 16 6 C -0.13 -2.14 10.04 -39.51 -0.40 -2.54 16 7 C -0.13 -2.20 10.03 -39.63 -0.40 -2.60 16 8 C -0.11 -2.07 9.74 -39.24 -0.38 -2.45 16 9 C -0.01 -0.17 4.94 -104.90 -0.52 -0.69 16 10 C -0.13 -2.76 4.28 -104.73 -0.45 -3.21 16 11 C -0.06 -1.13 9.73 -39.27 -0.38 -1.52 16 12 C -0.22 -3.74 10.03 -39.58 -0.40 -4.14 16 13 C -0.07 -1.30 10.03 -39.55 -0.40 -1.70 16 14 C -0.24 -5.05 9.16 -39.43 -0.36 -5.41 16 15 C 0.17 3.87 5.23 -38.74 -0.20 3.67 16 16 O -0.16 -4.14 6.67 0.37 0.00 -4.14 16 17 C -0.39 -10.42 9.49 30.88 0.29 -10.13 16 18 H 0.09 2.19 5.21 -52.49 -0.27 1.92 16 19 C 0.05 1.19 5.49 -17.52 -0.10 1.09 16 20 N -0.85 -23.43 12.76 55.48 0.71 -22.72 16 21 Si 0.93 19.99 29.55 -169.99 -5.02 14.97 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H 0.05 0.74 7.39 -51.93 -0.38 0.35 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.76 5.38 -51.93 -0.28 1.48 16 29 H 0.11 2.76 5.65 -51.93 -0.29 2.46 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.72 7.39 -51.93 -0.38 0.34 16 32 H 0.11 1.86 7.10 -52.49 -0.37 1.48 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.96 8.06 -52.48 -0.42 1.54 16 36 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -28.15 326.78 -8.66 -36.81 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.22 Total: 9.49 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: -4.05 Total: -39.33 kcal Atomic # 7 Polarization: -23.43 SS G_CDS: 0.71 Total: -22.72 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: 0.00 Total: -4.14 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.15 -8.66 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239867395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.753 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds