Wall clock time and date at job start Tue Mar 31 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47015 * 2 1 4 4 C 1.50701 * 109.47164 * 119.99499 * 2 1 3 5 5 C 1.38027 * 120.06112 * 300.00483 * 4 2 1 6 6 C 1.38314 * 120.12319 * 179.71867 * 5 4 2 7 7 C 1.38359 * 120.25587 * 0.25300 * 6 5 4 8 8 C 1.37980 * 120.12325 * 0.02562 * 7 6 5 9 9 C 1.39366 * 120.06507 * 120.25073 * 4 2 1 10 10 C 1.48289 * 120.12846 * 0.02768 * 9 4 2 11 11 C 1.39285 * 120.16047 * 244.98006 * 10 9 4 12 12 C 1.38018 * 119.94452 * 179.67346 * 11 10 9 13 13 C 1.38452 * 120.26593 * 0.61966 * 12 11 10 14 14 C 1.38107 * 120.32684 * 359.67898 * 13 12 11 15 15 C 1.38765 * 120.04610 * 359.97438 * 14 13 12 16 16 O 1.35664 * 120.12871 * 180.02562 * 15 14 13 17 17 C 1.34811 * 117.00419 * 354.39007 * 16 15 14 18 18 H 1.07994 * 120.00039 * 5.20178 * 17 16 15 19 19 C 1.38650 * 119.99843 * 185.21158 * 17 16 15 20 20 N 1.31549 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 59.99027 * 21 19 17 23 23 H 1.48493 * 109.47287 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46984 * 299.99484 * 21 19 17 25 25 H 1.08999 * 109.47288 * 300.00760 * 1 2 3 26 26 H 1.09002 * 109.46974 * 60.00171 * 1 2 3 27 27 H 1.08993 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47547 * 239.99890 * 2 1 3 29 29 H 1.09000 * 109.46911 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46427 * 299.99617 * 3 2 1 31 31 H 1.08993 * 109.47053 * 59.99588 * 3 2 1 32 32 H 1.07995 * 119.93901 * 359.97438 * 5 4 2 33 33 H 1.07998 * 119.87464 * 180.22822 * 6 5 4 34 34 H 1.07999 * 119.93885 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.06504 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.02742 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.86872 * 180.34412 * 12 11 10 38 38 H 1.07999 * 119.83530 * 179.69585 * 13 12 11 39 39 H 1.07994 * 119.97564 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00201 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6996 -0.2398 2.4847 6 6 2.1551 -0.8941 3.6150 7 6 2.9506 -2.0199 3.4958 8 6 3.2943 -2.4959 2.2471 9 6 2.8380 -1.8405 1.1043 10 6 3.2039 -2.3473 -0.2403 11 6 2.7553 -3.5962 -0.6634 12 6 3.0930 -4.0607 -1.9185 13 6 3.8874 -3.2955 -2.7553 14 6 4.3434 -2.0582 -2.3448 15 6 4.0061 -1.5752 -1.0884 16 8 4.4527 -0.3598 -0.6836 17 6 5.3147 0.2786 -1.5002 18 1 5.5542 -0.1403 -2.4664 19 6 5.8939 1.4729 -1.0995 20 7 5.6019 1.9833 0.0773 21 14 7.0878 2.3580 -2.2312 22 1 6.4025 2.7005 -3.5034 23 1 7.5624 3.6023 -1.5745 24 1 8.2472 1.4748 -2.5158 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.0790 0.6385 2.5837 33 1 1.8893 -0.5246 4.5943 34 1 3.3031 -2.5270 4.3817 35 1 3.9155 -3.3745 2.1552 36 1 2.1397 -4.1986 -0.0118 37 1 2.7399 -5.0269 -2.2474 38 1 4.1514 -3.6679 -3.7341 39 1 4.9624 -1.4659 -3.0023 40 1 6.0069 2.8191 0.3575 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239867395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:28 Heat of formation + Delta-G solvation = -3.436158 kcal Electronic energy + Delta-G solvation = -22468.483320 eV Core-core repulsion = 19405.683276 eV Total energy + Delta-G solvation = -3062.800044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22060 -39.73501 -37.95159 -36.09023 -34.22876 -33.37639 -30.69842 -30.63731 -29.41667 -27.85829 -27.21812 -24.30042 -24.20596 -22.93657 -21.81796 -20.68112 -19.70477 -18.76941 -17.46427 -16.70880 -16.38498 -16.15207 -16.07176 -15.44209 -15.23844 -14.97194 -14.79674 -14.46878 -14.34737 -14.16080 -13.98519 -13.52006 -13.14752 -13.06278 -12.87971 -12.81538 -12.56069 -12.45567 -12.34086 -12.14199 -12.02005 -11.80064 -11.48930 -11.38524 -11.02659 -10.69206 -9.86015 -9.52339 -9.27201 -8.76766 -8.36189 -6.00972 0.32962 0.63951 0.76450 0.86640 1.36154 1.44517 1.48736 2.19853 2.87495 2.99945 3.24232 3.57129 3.86186 3.99350 4.03558 4.23661 4.28235 4.31003 4.36030 4.47445 4.56215 4.65995 4.69100 4.71134 4.80330 4.82740 5.00575 5.06917 5.11180 5.16293 5.19803 5.21160 5.29174 5.35206 5.44153 5.65317 5.70120 5.73808 5.76104 5.80870 5.85451 5.97805 6.13661 6.26566 6.29938 7.07608 7.89226 8.82601 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.007860 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.142935 B = 3561.629672 C = 4493.072274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 C -0.145 4.145 4 C -0.061 4.061 5 C -0.128 4.128 6 C -0.127 4.127 7 C -0.131 4.131 8 C -0.125 4.125 9 C -0.040 4.040 10 C -0.136 4.136 11 C -0.066 4.066 12 C -0.195 4.195 13 C -0.072 4.072 14 C -0.255 4.255 15 C 0.132 3.868 16 O -0.192 6.192 17 C -0.413 4.413 18 H 0.091 0.909 19 C -0.006 4.006 20 N -0.896 5.896 21 Si 1.000 3.000 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.265 1.265 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.117 0.883 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 -6.996 1.484 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.065 4.065 3 C -0.202 4.202 4 C -0.061 4.061 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.149 4.149 8 C -0.143 4.143 9 C -0.040 4.040 10 C -0.137 4.137 11 C -0.084 4.084 12 C -0.214 4.214 13 C -0.090 4.090 14 C -0.274 4.274 15 C 0.080 3.920 16 O -0.096 6.096 17 C -0.489 4.489 18 H 0.108 0.892 19 C -0.206 4.206 20 N -0.532 5.532 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.190 1.190 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.141 0.859 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.361 -6.663 1.812 10.093 hybrid contribution 0.980 0.737 -0.706 1.415 sum -6.381 -5.927 1.107 8.779 Atomic orbital electron populations 1.21791 0.93075 1.01757 1.02258 1.19949 0.96166 0.95470 0.94957 1.21862 1.03746 0.94853 0.99743 1.20022 0.96551 0.94209 0.95329 1.21065 1.01438 1.00166 0.91902 1.21402 0.98294 0.95898 0.98911 1.21275 0.98972 0.97434 0.97199 1.21347 1.00129 1.00593 0.92256 1.18725 0.97243 0.95697 0.92324 1.18158 1.05288 0.96090 0.94174 1.21088 0.97814 0.92853 0.96602 1.21032 1.03747 1.01872 0.94709 1.21179 0.95403 0.92554 0.99859 1.21271 1.08876 0.99990 0.97308 1.19808 0.93246 0.86124 0.92791 1.84010 1.54999 1.25022 1.45615 1.21601 1.22381 1.05382 0.99576 0.89160 1.26157 0.99314 0.96814 0.98267 1.70132 1.43018 1.19851 1.20246 0.84908 0.77799 0.77568 0.77612 1.18731 1.19900 1.18968 0.91586 0.92092 0.92617 0.93065 0.91221 0.93989 0.93180 0.85398 0.83628 0.83622 0.85890 0.84427 0.83447 0.84165 0.86514 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.01 71.98 0.65 -3.45 16 2 C -0.05 -1.89 2.25 -11.54 -0.03 -1.91 16 3 C -0.14 -6.32 8.90 71.99 0.64 -5.68 16 4 C -0.06 -2.46 4.60 -19.64 -0.09 -2.55 16 5 C -0.13 -4.50 8.71 22.24 0.19 -4.31 16 6 C -0.13 -3.94 10.04 22.32 0.22 -3.71 16 7 C -0.13 -4.10 10.03 22.24 0.22 -3.87 16 8 C -0.13 -4.57 9.74 22.49 0.22 -4.35 16 9 C -0.04 -1.65 4.94 -20.05 -0.10 -1.75 16 10 C -0.14 -5.77 4.28 -19.93 -0.09 -5.86 16 11 C -0.07 -2.28 9.73 22.47 0.22 -2.06 16 12 C -0.20 -6.12 10.03 22.27 0.22 -5.89 16 13 C -0.07 -2.48 10.03 22.29 0.22 -2.26 16 14 C -0.26 -11.09 9.16 22.36 0.20 -10.89 16 15 C 0.13 6.40 5.23 22.81 0.12 6.52 16 16 O -0.19 -10.72 6.67 -21.60 -0.14 -10.86 16 17 C -0.41 -23.08 9.49 67.92 0.64 -22.44 16 18 H 0.09 4.77 5.21 -2.91 -0.02 4.75 16 19 C -0.01 -0.32 5.49 84.83 0.47 0.15 16 20 N -0.90 -51.99 12.76 21.61 0.28 -51.72 16 21 Si 1.00 42.46 29.55 68.60 2.03 44.48 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 H 0.07 1.83 7.39 -2.39 -0.02 1.81 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 2.34 5.38 -2.39 -0.01 2.32 16 29 H 0.07 3.71 5.65 -2.39 -0.01 3.70 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.97 7.39 -2.39 -0.02 1.95 16 32 H 0.13 4.01 7.10 -2.91 -0.02 3.99 16 33 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 37 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 39 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 40 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -65.44 326.78 7.14 -58.30 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 1.04 Total: 34.13 kcal Atomic # 6 Polarization: -78.27 SS G_CDS: 3.95 Total: -74.33 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.28 Total: -51.72 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.14 Total: -10.86 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.44 7.14 -58.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239867395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.860 kcal (2) G-P(sol) polarization free energy of solvation -65.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds