Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00327 * 2 1 4 4 C 1.50700 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.38404 * 119.92901 * 270.01753 * 4 3 2 6 6 C 1.38365 * 120.29271 * 180.02562 * 5 4 3 7 7 C 1.37959 * 120.14385 * 359.74454 * 6 5 4 8 8 C 1.39579 * 119.85202 * 0.49299 * 7 6 5 9 9 C 1.47993 * 120.14310 * 179.79002 * 8 7 6 10 10 C 1.39958 * 119.88101 * 179.71969 * 9 8 7 11 11 C 1.36232 * 120.12267 * 179.97438 * 10 9 8 12 12 C 1.40945 * 119.87443 * 0.02562 * 11 10 9 13 13 C 1.41031 * 120.11709 * 179.71889 * 12 11 10 14 14 H 1.08006 * 120.00111 * 149.61337 * 13 12 11 15 15 C 1.40005 * 120.00030 * 329.61394 * 13 12 11 16 16 N 1.30794 * 120.00035 * 162.15240 * 15 13 12 17 17 Si 1.86800 * 119.99984 * 342.15823 * 15 13 12 18 18 H 1.48500 * 109.47038 * 95.38989 * 17 15 13 19 19 H 1.48500 * 109.47128 * 215.38484 * 17 15 13 20 20 H 1.48492 * 109.47398 * 335.38736 * 17 15 13 21 21 C 1.40917 * 119.76926 * 359.97438 * 12 11 10 22 22 C 1.50695 * 120.06508 * 179.97438 * 21 12 11 23 23 C 1.36272 * 119.87328 * 0.02562 * 21 12 11 24 24 C 1.37919 * 119.92330 * 90.00111 * 4 3 2 25 25 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46990 * 300.00260 * 1 2 3 27 27 H 1.09002 * 109.47428 * 60.00253 * 1 2 3 28 28 H 1.09003 * 109.46799 * 59.99587 * 3 2 1 29 29 H 1.09001 * 109.46514 * 300.00150 * 3 2 1 30 30 H 1.08006 * 119.85157 * 0.03373 * 5 4 3 31 31 H 1.08003 * 119.92621 * 180.02562 * 6 5 4 32 32 H 1.08000 * 120.07323 * 180.27568 * 7 6 5 33 33 H 1.08004 * 119.93839 * 0.02562 * 10 9 8 34 34 H 1.07990 * 120.06526 * 179.97438 * 11 10 9 35 35 H 0.97004 * 120.00077 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47207 * 90.00064 * 22 21 12 37 37 H 1.09004 * 109.47393 * 209.99835 * 22 21 12 38 38 H 1.08998 * 109.47224 * 329.99881 * 22 21 12 39 39 H 1.07998 * 119.93676 * 179.97438 * 23 21 12 40 40 H 1.07998 * 120.07684 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2004 1.1317 1.2004 6 6 5.5797 1.0229 1.2098 7 6 6.2780 0.9630 0.0215 8 6 5.5909 1.0227 -1.1920 9 6 6.3339 0.9636 -2.4705 10 6 5.6388 1.0180 -3.6841 11 6 6.3179 0.9645 -4.8639 12 6 7.7230 0.8537 -4.8608 13 6 8.4306 0.7919 -6.0791 14 1 9.4339 1.1871 -6.1416 15 6 7.8327 0.2185 -7.2077 16 7 8.3162 0.4611 -8.3985 17 14 6.3441 -0.8932 -7.0128 18 1 5.1045 -0.0992 -7.2078 19 1 6.4010 -1.9785 -8.0248 20 1 6.3435 -1.4855 -5.6512 21 6 8.4178 0.7993 -3.6360 22 6 9.9200 0.6802 -3.6249 23 6 7.7287 0.8536 -2.4617 24 6 4.1989 1.1319 -1.1944 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.6580 1.1740 2.1335 31 1 6.1105 0.9803 2.1494 32 1 7.3543 0.8736 0.0301 33 1 4.5622 1.1033 -3.6852 34 1 5.7806 1.0061 -5.7997 35 1 7.9017 0.0641 -9.1805 36 1 10.3634 1.6759 -3.6229 37 1 10.2352 0.1403 -2.7320 38 1 10.2481 0.1382 -4.5119 39 1 8.2601 0.8116 -1.5224 40 1 3.6609 1.1740 -2.1299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239935636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = -16.088071 kcal Electronic energy + Delta-G solvation = -20847.021340 eV Core-core repulsion = 17783.672668 eV Total energy + Delta-G solvation = -3063.348672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.35180 -38.12563 -37.26995 -33.97838 -32.47759 -31.86269 -30.91414 -29.21562 -27.35317 -26.41389 -25.20706 -24.70113 -22.21104 -21.95833 -20.20138 -19.23588 -17.54641 -16.70527 -16.39901 -15.89945 -15.48287 -15.41058 -14.66553 -14.39950 -13.92136 -13.68274 -13.49129 -12.95267 -12.74600 -12.61749 -12.40353 -12.26980 -12.25804 -11.93565 -11.59634 -11.47374 -11.27813 -10.95504 -10.82256 -10.71357 -10.58298 -10.22514 -9.87082 -9.76384 -9.58413 -9.26289 -8.68096 -8.53288 -7.70971 -7.16750 -7.11763 -4.56199 1.43460 1.69242 2.62782 2.70996 3.04761 3.15608 3.25809 3.76401 3.88347 4.23831 4.60947 4.93173 4.98029 5.19219 5.22074 5.25183 5.31750 5.38385 5.41470 5.50794 5.58151 5.80496 5.88438 5.94056 5.98843 6.21674 6.34475 6.37285 6.50867 6.55478 6.62191 6.77359 6.80205 6.86081 6.90218 7.00785 7.05475 7.07165 7.34486 7.43659 7.62801 7.74077 7.82212 8.01252 8.19791 8.53741 8.64639 9.87743 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.004477 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.865925 B = 6252.185363 C = 7507.937096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.105 3.895 4 C -0.086 4.086 5 C -0.138 4.138 6 C -0.113 4.113 7 C -0.136 4.136 8 C 0.018 3.982 9 C -0.201 4.201 10 C -0.054 4.054 11 C -0.240 4.240 12 C 0.100 3.900 13 C -0.427 4.427 14 H 0.097 0.903 15 C 0.083 3.917 16 N -0.795 5.795 17 Si 0.912 3.088 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.241 1.241 21 C -0.184 4.184 22 C -0.089 4.089 23 C -0.055 4.055 24 C -0.121 4.121 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.289 0.711 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 0.409 12.369 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.029 3.971 4 C -0.086 4.086 5 C -0.156 4.156 6 C -0.131 4.131 7 C -0.154 4.154 8 C 0.018 3.982 9 C -0.202 4.202 10 C -0.072 4.072 11 C -0.259 4.259 12 C 0.097 3.903 13 C -0.454 4.454 14 H 0.115 0.885 15 C -0.138 4.138 16 N -0.418 5.418 17 Si 0.738 3.262 18 H -0.195 1.195 19 H -0.216 1.216 20 H -0.164 1.164 21 C -0.185 4.185 22 C -0.146 4.146 23 C -0.073 4.073 24 C -0.139 4.139 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.970 0.231 12.048 15.023 hybrid contribution -0.925 -0.176 -0.178 0.958 sum -9.895 0.055 11.871 15.454 Atomic orbital electron populations 1.22739 0.81457 1.02661 0.99791 1.88009 1.19194 1.27762 1.95339 1.21352 0.90538 0.84779 1.00396 1.19346 0.93168 1.02419 0.93696 1.20786 0.94260 1.03867 0.96680 1.20923 0.94012 1.00548 0.97648 1.21239 0.99841 1.02561 0.91766 1.18936 0.92278 0.94019 0.92977 1.18032 0.92713 1.18954 0.90516 1.20443 0.97527 0.96983 0.92242 1.20704 0.94888 1.13796 0.96471 1.17685 0.91326 0.88528 0.92756 1.19610 1.02675 1.31644 0.91502 0.88531 1.26278 0.97780 0.95591 0.94155 1.69674 1.38477 1.34224 0.99390 0.86285 0.80301 0.79503 0.80147 1.19454 1.21632 1.16425 1.19443 0.95085 1.11385 0.92578 1.20458 0.92862 1.00225 1.01036 1.20352 0.92769 0.97770 0.96412 1.21067 0.93773 1.02055 0.97036 0.89713 0.94274 0.94106 0.92814 0.92638 0.87037 0.86669 0.86169 0.88562 0.88061 0.90086 0.93530 0.93974 0.91581 0.88352 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.32 10.69 -35.23 -0.38 -5.69 16 3 C 0.11 1.35 6.06 36.01 0.22 1.57 16 4 C -0.09 -1.33 5.50 -104.68 -0.58 -1.90 16 5 C -0.14 -1.98 9.69 -39.47 -0.38 -2.37 16 6 C -0.11 -1.65 10.03 -39.64 -0.40 -2.04 16 7 C -0.14 -2.26 9.43 -39.18 -0.37 -2.63 16 8 C 0.02 0.34 5.88 -104.88 -0.62 -0.28 16 9 C -0.20 -4.25 5.90 -104.63 -0.62 -4.87 16 10 C -0.05 -1.18 9.36 -39.66 -0.37 -1.55 16 11 C -0.24 -5.68 7.08 -39.28 -0.28 -5.96 16 12 C 0.10 2.47 5.10 -106.80 -0.54 1.92 16 13 C -0.43 -10.98 8.50 -37.86 -0.32 -11.31 16 14 H 0.10 2.57 7.22 -52.48 -0.38 2.19 16 15 C 0.08 2.08 5.40 -17.33 -0.09 1.99 16 16 N -0.80 -20.25 13.93 55.55 0.77 -19.47 16 17 Si 0.91 20.31 24.52 -169.99 -4.17 16.14 16 18 H -0.27 -5.82 6.71 56.52 0.38 -5.44 16 19 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 21 C -0.18 -4.13 5.90 -104.32 -0.62 -4.75 16 22 C -0.09 -1.74 9.41 36.00 0.34 -1.40 16 23 C -0.05 -1.15 9.00 -39.66 -0.36 -1.51 16 24 C -0.12 -2.11 9.08 -39.18 -0.36 -2.47 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.57 8.08 -51.93 -0.42 0.16 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 32 H 0.12 1.86 6.18 -52.49 -0.32 1.53 16 33 H 0.10 1.88 6.18 -52.48 -0.32 1.55 16 34 H 0.10 2.38 4.78 -52.49 -0.25 2.13 16 35 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.07 1.34 6.84 -51.93 -0.36 0.98 16 39 H 0.10 1.81 6.18 -52.49 -0.32 1.48 16 40 H 0.12 2.00 6.18 -52.49 -0.32 1.68 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -27.50 326.93 -8.32 -35.82 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.25 Total: 4.44 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: -4.23 Total: -36.16 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.77 Total: -19.47 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.38 Total: -5.69 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.17 Total: 16.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.50 -8.32 -35.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239935636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.731 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds