Wall clock time and date at job start Tue Mar 31 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46873 * 2 1 4 4 O 1.42901 * 109.47246 * 240.00296 * 2 1 3 5 5 C 1.50700 * 109.47337 * 120.00117 * 2 1 3 6 6 C 1.38417 * 119.92461 * 330.27443 * 5 2 1 7 7 C 1.38373 * 120.30025 * 180.27508 * 6 5 2 8 8 C 1.37940 * 120.14906 * 359.45575 * 7 6 5 9 9 C 1.39626 * 119.84874 * 0.26771 * 8 7 6 10 10 C 1.47874 * 120.14765 * 179.97438 * 9 8 7 11 11 C 1.39159 * 120.33938 * 129.99990 * 10 9 8 12 12 C 1.38092 * 119.98878 * 179.97438 * 11 10 9 13 13 C 1.38927 * 120.66903 * 0.02562 * 12 11 10 14 14 C 1.36438 * 120.68631 * 359.97438 * 13 12 11 15 15 C 1.40752 * 119.98372 * 359.74660 * 14 13 12 16 16 C 1.40884 * 120.32415 * 180.25360 * 15 14 13 17 17 H 1.08001 * 119.99831 * 153.57643 * 16 15 14 18 18 C 1.40075 * 120.00168 * 333.57055 * 16 15 14 19 19 N 1.30769 * 120.00232 * 343.47642 * 18 16 15 20 20 Si 1.86799 * 119.99938 * 163.47005 * 18 16 15 21 21 H 1.48503 * 109.47063 * 60.00594 * 20 18 16 22 22 H 1.48503 * 109.46984 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47516 * 300.00370 * 20 18 16 24 24 C 1.37904 * 119.92585 * 150.00313 * 5 2 1 25 25 H 1.09003 * 109.46877 * 299.99709 * 1 2 3 26 26 H 1.09002 * 109.47228 * 59.99935 * 1 2 3 27 27 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47095 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47207 * 299.99805 * 3 2 1 30 30 H 1.09003 * 109.47132 * 60.00447 * 3 2 1 31 31 H 0.96698 * 114.00105 * 179.97438 * 4 2 1 32 32 H 1.08004 * 119.84765 * 0.02562 * 6 5 2 33 33 H 1.08003 * 119.92384 * 179.71754 * 7 6 5 34 34 H 1.08005 * 120.07835 * 180.25406 * 8 7 6 35 35 H 1.08005 * 120.00483 * 0.02562 * 11 10 9 36 36 H 1.08003 * 119.66314 * 179.97438 * 12 11 10 37 37 H 1.07994 * 119.65225 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.00419 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00496 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.07839 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2304 6 6 1.2804 -0.6945 2.3924 7 6 1.7369 -1.3394 3.5283 8 6 2.9407 -2.0125 3.5063 9 6 3.7016 -2.0375 2.3359 10 6 4.9933 -2.7567 2.3050 11 6 5.2689 -3.6634 1.2860 12 6 6.4777 -4.3306 1.2639 13 6 7.4283 -4.1076 2.2522 14 6 7.1869 -3.2247 3.2640 15 6 5.9666 -2.5249 3.3107 16 6 5.7120 -1.6076 4.3492 17 1 5.0279 -0.7872 4.1895 18 6 6.3459 -1.7595 5.5891 19 7 6.9080 -2.8983 5.9008 20 14 6.3885 -0.3354 6.7971 21 1 5.0001 0.0562 7.1497 22 1 7.1136 -0.7495 8.0251 23 1 7.0861 0.8195 6.1766 24 6 3.2376 -1.3797 1.1945 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 2.9703 -0.7114 -1.2331 32 1 0.3349 -0.1728 2.4137 33 1 1.1474 -1.3192 4.4330 34 1 3.2940 -2.5190 4.3924 35 1 4.5377 -3.8446 0.5120 36 1 6.6859 -5.0335 0.4708 37 1 8.3681 -4.6387 2.2192 38 1 7.9339 -3.0595 4.0263 39 1 7.3474 -3.0035 6.7592 40 1 3.8211 -1.3954 0.2859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240407707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:07 Heat of formation + Delta-G solvation = -22.207973 kcal Electronic energy + Delta-G solvation = -21659.406601 eV Core-core repulsion = 18595.792550 eV Total energy + Delta-G solvation = -3063.614051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.54020 -37.81859 -36.45822 -33.77675 -32.81134 -31.21687 -30.00958 -29.29292 -27.95496 -27.17503 -25.34680 -22.79196 -22.26292 -20.84790 -20.38079 -19.22283 -17.54527 -17.03662 -15.54708 -15.44866 -14.96417 -14.90944 -14.46712 -13.95982 -13.78841 -13.33857 -13.24043 -12.94757 -12.67759 -12.47139 -12.15187 -11.96409 -11.78681 -11.67869 -11.61034 -11.30501 -11.13293 -11.09135 -10.87715 -10.65007 -10.54416 -10.42693 -9.85516 -9.69572 -9.40979 -9.26838 -8.32025 -8.10958 -7.46462 -7.22136 -6.83947 -4.42925 1.87957 2.01807 2.74835 2.99935 3.01139 3.04126 3.18711 3.85394 4.27405 4.51502 4.57731 4.85493 5.02384 5.12822 5.49330 5.50815 5.63223 5.65032 5.79704 5.83183 5.87068 5.90546 6.06419 6.17533 6.18188 6.26055 6.29509 6.36016 6.54597 6.65933 6.75159 6.96355 7.06098 7.12214 7.16273 7.25584 7.44585 7.51971 7.64014 7.76211 7.86813 7.98239 8.03788 8.19344 8.53002 8.77571 8.87287 10.06876 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.005896 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.336525 B = 4747.786500 C = 5883.929908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 C -0.172 4.172 4 O -0.559 6.559 5 C -0.118 4.118 6 C -0.141 4.141 7 C -0.125 4.125 8 C -0.097 4.097 9 C 0.026 3.974 10 C -0.190 4.190 11 C -0.071 4.071 12 C -0.243 4.243 13 C -0.101 4.101 14 C -0.159 4.159 15 C 0.131 3.869 16 C -0.451 4.451 17 H 0.082 0.918 18 C 0.077 3.923 19 N -0.788 5.788 20 Si 0.904 3.096 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.123 4.123 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.376 0.624 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.283 0.717 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.205 5.461 -4.816 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.130 3.870 3 C -0.230 4.230 4 O -0.366 6.366 5 C -0.118 4.118 6 C -0.159 4.159 7 C -0.143 4.143 8 C -0.115 4.115 9 C 0.026 3.974 10 C -0.191 4.191 11 C -0.089 4.089 12 C -0.263 4.263 13 C -0.120 4.120 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.480 4.480 17 H 0.100 0.900 18 C -0.142 4.142 19 N -0.412 5.412 20 Si 0.729 3.271 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.142 4.142 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.719 5.275 -4.715 10.471 hybrid contribution 0.794 0.554 0.866 1.298 sum -6.925 5.829 -3.849 9.836 Atomic orbital electron populations 1.21788 0.92628 1.02859 1.01943 1.19933 0.94348 0.90022 0.82659 1.22468 1.01958 0.96200 1.02337 1.86511 1.26993 1.79725 1.43417 1.20152 0.95809 1.00375 0.95447 1.20810 0.99661 1.02411 0.92984 1.20997 0.96784 0.98956 0.97607 1.21465 0.93143 0.98373 0.98540 1.18781 0.92981 0.93605 0.91999 1.18607 0.93639 1.05018 1.01864 1.20578 0.95724 0.96335 0.96282 1.20284 0.96682 1.07211 1.02099 1.20485 0.97500 0.98567 0.95404 1.21037 0.97826 1.00295 0.98647 1.17520 0.89568 0.90054 0.90036 1.19546 1.22689 1.10394 0.95356 0.89960 1.25938 0.92980 0.95980 0.99263 1.69782 1.26109 1.23195 1.22151 0.86412 0.79690 0.81955 0.79082 1.18785 1.20259 1.18747 1.20925 0.95687 0.99255 0.98291 0.90977 0.92165 0.91753 0.92055 0.92007 0.91501 0.77509 0.86997 0.86960 0.85365 0.89203 0.89421 0.89492 0.86485 0.90621 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.14 37.16 0.30 -1.31 16 2 C 0.17 2.34 1.26 -91.77 -0.12 2.22 16 3 C -0.17 -2.07 8.80 37.16 0.33 -1.75 16 4 O -0.56 -8.01 12.71 -35.23 -0.45 -8.46 16 5 C -0.12 -1.92 4.84 -104.68 -0.51 -2.42 16 6 C -0.14 -2.23 9.14 -39.47 -0.36 -2.59 16 7 C -0.13 -2.17 10.03 -39.64 -0.40 -2.57 16 8 C -0.10 -1.99 8.01 -39.17 -0.31 -2.30 16 9 C 0.03 0.56 4.92 -104.90 -0.52 0.04 16 10 C -0.19 -4.47 5.52 -104.23 -0.58 -5.05 16 11 C -0.07 -1.58 9.51 -39.29 -0.37 -1.96 16 12 C -0.24 -5.38 10.03 -39.38 -0.40 -5.77 16 13 C -0.10 -2.33 9.96 -39.98 -0.40 -2.72 16 14 C -0.16 -4.00 8.62 -39.28 -0.34 -4.34 16 15 C 0.13 3.33 5.56 -106.56 -0.59 2.74 16 16 C -0.45 -11.31 7.13 -37.89 -0.27 -11.58 16 17 H 0.08 2.05 6.65 -52.49 -0.35 1.70 16 18 C 0.08 1.85 5.15 -17.32 -0.09 1.76 16 19 N -0.79 -19.47 11.01 55.55 0.61 -18.86 16 20 Si 0.90 18.13 29.59 -169.99 -5.03 13.10 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 22 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.12 -2.28 8.79 -39.17 -0.34 -2.63 16 25 H 0.07 0.74 6.50 -51.93 -0.34 0.41 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.38 4.56 7.32 45.56 0.33 4.90 16 32 H 0.11 1.47 6.14 -52.48 -0.32 1.14 16 33 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.13 2.81 7.33 -52.48 -0.38 2.42 16 35 H 0.09 1.81 8.04 -52.48 -0.42 1.39 16 36 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.12 3.02 6.25 -52.49 -0.33 2.69 16 39 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 40 H 0.11 1.89 6.47 -52.49 -0.34 1.55 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -26.98 327.93 -9.55 -36.53 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.67 Total: 12.97 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -4.96 Total: -40.22 kcal Atomic # 7 Polarization: -19.47 SS G_CDS: 0.61 Total: -18.86 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.45 Total: -8.46 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.98 -9.55 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.317 kcal (2) G-P(sol) polarization free energy of solvation -26.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds