Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46873 * 2 1 4 4 O 1.42901 * 109.47246 * 240.00296 * 2 1 3 5 5 C 1.50700 * 109.47337 * 120.00117 * 2 1 3 6 6 C 1.38417 * 119.92461 * 330.27443 * 5 2 1 7 7 C 1.38373 * 120.30025 * 180.27508 * 6 5 2 8 8 C 1.37940 * 120.14906 * 359.45575 * 7 6 5 9 9 C 1.39626 * 119.84874 * 0.26771 * 8 7 6 10 10 C 1.47874 * 120.14765 * 179.97438 * 9 8 7 11 11 C 1.39159 * 120.33938 * 129.99990 * 10 9 8 12 12 C 1.38092 * 119.98878 * 179.97438 * 11 10 9 13 13 C 1.38927 * 120.66903 * 0.02562 * 12 11 10 14 14 C 1.36438 * 120.68631 * 359.97438 * 13 12 11 15 15 C 1.40752 * 119.98372 * 359.74660 * 14 13 12 16 16 C 1.40884 * 120.32415 * 180.25360 * 15 14 13 17 17 H 1.08001 * 119.99831 * 153.57643 * 16 15 14 18 18 C 1.40075 * 120.00168 * 333.57055 * 16 15 14 19 19 N 1.30769 * 120.00232 * 343.47642 * 18 16 15 20 20 Si 1.86799 * 119.99938 * 163.47005 * 18 16 15 21 21 H 1.48503 * 109.47063 * 60.00594 * 20 18 16 22 22 H 1.48503 * 109.46984 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47516 * 300.00370 * 20 18 16 24 24 C 1.37904 * 119.92585 * 150.00313 * 5 2 1 25 25 H 1.09003 * 109.46877 * 299.99709 * 1 2 3 26 26 H 1.09002 * 109.47228 * 59.99935 * 1 2 3 27 27 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47095 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47207 * 299.99805 * 3 2 1 30 30 H 1.09003 * 109.47132 * 60.00447 * 3 2 1 31 31 H 0.96698 * 114.00105 * 179.97438 * 4 2 1 32 32 H 1.08004 * 119.84765 * 0.02562 * 6 5 2 33 33 H 1.08003 * 119.92384 * 179.71754 * 7 6 5 34 34 H 1.08005 * 120.07835 * 180.25406 * 8 7 6 35 35 H 1.08005 * 120.00483 * 0.02562 * 11 10 9 36 36 H 1.08003 * 119.66314 * 179.97438 * 12 11 10 37 37 H 1.07994 * 119.65225 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.00419 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00496 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.07839 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2304 6 6 1.2804 -0.6945 2.3924 7 6 1.7369 -1.3394 3.5283 8 6 2.9407 -2.0125 3.5063 9 6 3.7016 -2.0375 2.3359 10 6 4.9933 -2.7567 2.3050 11 6 5.2689 -3.6634 1.2860 12 6 6.4777 -4.3306 1.2639 13 6 7.4283 -4.1076 2.2522 14 6 7.1869 -3.2247 3.2640 15 6 5.9666 -2.5249 3.3107 16 6 5.7120 -1.6076 4.3492 17 1 5.0279 -0.7872 4.1895 18 6 6.3459 -1.7595 5.5891 19 7 6.9080 -2.8983 5.9008 20 14 6.3885 -0.3354 6.7971 21 1 5.0001 0.0562 7.1497 22 1 7.1136 -0.7495 8.0251 23 1 7.0861 0.8195 6.1766 24 6 3.2376 -1.3797 1.1945 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 2.9703 -0.7114 -1.2331 32 1 0.3349 -0.1728 2.4137 33 1 1.1474 -1.3192 4.4330 34 1 3.2940 -2.5190 4.3924 35 1 4.5377 -3.8446 0.5120 36 1 6.6859 -5.0335 0.4708 37 1 8.3681 -4.6387 2.2192 38 1 7.9339 -3.0595 4.0263 39 1 7.3474 -3.0035 6.7592 40 1 3.8211 -1.3954 0.2859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -35.240958 kcal Electronic energy + Delta-G solvation = -21659.971754 eV Core-core repulsion = 18595.792550 eV Total energy + Delta-G solvation = -3064.179204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87339 -39.41126 -37.81964 -35.58707 -34.06167 -32.66586 -31.67305 -30.81504 -29.45019 -28.18237 -27.15325 -24.14958 -23.77394 -22.57135 -21.86321 -20.59998 -19.24900 -18.45428 -17.18824 -16.81733 -16.43266 -16.21097 -15.92129 -15.46240 -15.31563 -14.81171 -14.60438 -14.36639 -14.16028 -13.85846 -13.49197 -13.25067 -13.10990 -13.01389 -12.92667 -12.76383 -12.66442 -12.56510 -12.37782 -12.21385 -11.94034 -11.76039 -11.44857 -11.23491 -11.06861 -10.89984 -9.86672 -9.54819 -9.30582 -8.93450 -8.61448 -6.30283 0.36895 0.60402 1.01058 1.24890 1.35542 1.45536 1.52090 2.17739 2.73255 2.96557 3.40858 3.68059 3.77285 3.96135 4.10276 4.22575 4.27812 4.38705 4.45119 4.60307 4.65274 4.69330 4.77502 4.86535 4.89423 4.97143 5.02074 5.12405 5.19938 5.25337 5.27481 5.32216 5.32434 5.45763 5.63071 5.72210 5.75368 5.87914 6.02318 6.15933 6.17206 6.29233 6.38005 6.68177 6.75984 6.92786 7.03058 8.30240 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.005896 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.336525 B = 4747.786500 C = 5883.929908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 C -0.169 4.169 4 O -0.570 6.570 5 C -0.113 4.113 6 C -0.130 4.130 7 C -0.124 4.124 8 C -0.119 4.119 9 C -0.005 4.005 10 C -0.194 4.194 11 C -0.081 4.081 12 C -0.242 4.242 13 C -0.108 4.108 14 C -0.186 4.186 15 C 0.099 3.901 16 C -0.472 4.472 17 H 0.074 0.926 18 C 0.039 3.961 19 N -0.821 5.821 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.129 4.129 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.383 0.617 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.288 0.712 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 6.958 -5.762 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.129 3.871 3 C -0.226 4.226 4 O -0.379 6.379 5 C -0.113 4.113 6 C -0.148 4.148 7 C -0.142 4.142 8 C -0.137 4.137 9 C -0.005 4.005 10 C -0.196 4.196 11 C -0.099 4.099 12 C -0.261 4.261 13 C -0.126 4.126 14 C -0.206 4.206 15 C 0.097 3.903 16 C -0.501 4.501 17 H 0.092 0.908 18 C -0.176 4.176 19 N -0.446 5.446 20 Si 0.791 3.209 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.187 1.187 24 C -0.147 4.147 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.731 6.762 -5.674 13.138 hybrid contribution 1.326 0.051 1.025 1.676 sum -8.405 6.813 -4.649 11.776 Atomic orbital electron populations 1.21845 0.90913 1.02830 1.03670 1.20116 0.95600 0.90372 0.81055 1.22441 1.01433 0.95164 1.03608 1.86503 1.27808 1.79986 1.43573 1.20558 0.94684 0.99147 0.96947 1.21247 1.00619 1.01028 0.91893 1.21271 0.95640 0.97963 0.99344 1.21329 0.94926 1.00017 0.97441 1.18813 0.92676 0.95490 0.93528 1.19000 0.94371 1.04921 1.01297 1.20889 0.96443 0.95974 0.96591 1.20651 0.96171 1.07056 1.02246 1.20756 0.98760 0.98120 0.94990 1.21033 0.97887 1.02120 0.99522 1.17883 0.90304 0.90901 0.91256 1.19592 1.23681 1.10612 0.96240 0.90756 1.26675 0.92282 0.98141 1.00524 1.69837 1.27047 1.24782 1.22951 0.85426 0.79799 0.78612 0.77070 1.18298 1.19137 1.18704 1.21028 0.96741 0.99306 0.97589 0.89007 0.90801 0.92639 0.92955 0.90302 0.90680 0.76723 0.83208 0.84477 0.88278 0.87108 0.86459 0.87324 0.88135 0.90092 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.14 71.98 0.59 -2.10 16 2 C 0.17 4.10 1.26 -11.54 -0.01 4.09 16 3 C -0.17 -3.53 8.80 71.98 0.63 -2.90 16 4 O -0.57 -14.97 12.71 -148.98 -1.89 -16.86 16 5 C -0.11 -3.43 4.84 -19.90 -0.10 -3.52 16 6 C -0.13 -3.74 9.14 22.34 0.20 -3.54 16 7 C -0.12 -4.13 10.03 22.23 0.22 -3.91 16 8 C -0.12 -4.97 8.01 22.53 0.18 -4.79 16 9 C -0.01 -0.22 4.92 -20.05 -0.10 -0.32 16 10 C -0.19 -9.46 5.52 -19.61 -0.11 -9.57 16 11 C -0.08 -3.61 9.51 22.46 0.21 -3.40 16 12 C -0.24 -10.58 10.03 22.40 0.22 -10.35 16 13 C -0.11 -5.04 9.96 22.01 0.22 -4.82 16 14 C -0.19 -9.81 8.62 22.46 0.19 -9.61 16 15 C 0.10 5.29 5.56 -21.12 -0.12 5.17 16 16 C -0.47 -24.85 7.13 23.36 0.17 -24.68 16 17 H 0.07 3.89 6.65 -2.91 -0.02 3.87 16 18 C 0.04 1.95 5.15 85.30 0.44 2.39 16 19 N -0.82 -42.34 11.01 21.85 0.24 -42.10 16 20 Si 0.97 37.98 29.59 68.60 2.03 40.01 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 24 C -0.13 -4.67 8.79 22.54 0.20 -4.47 16 25 H 0.09 1.43 6.50 -2.39 -0.02 1.42 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.38 8.63 7.32 -74.06 -0.54 8.09 16 32 H 0.15 3.17 6.14 -2.91 -0.02 3.15 16 33 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 34 H 0.10 4.63 7.33 -2.91 -0.02 4.61 16 35 H 0.11 4.38 8.04 -2.91 -0.02 4.36 16 36 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.10 5.51 6.25 -2.91 -0.02 5.49 16 39 H 0.29 13.53 8.29 -92.71 -0.77 12.76 16 40 H 0.12 3.98 6.47 -2.91 -0.02 3.96 16 Total: -1.00 -60.34 327.93 3.93 -56.41 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.51 Total: 38.87 kcal Atomic # 6 Polarization: -79.37 SS G_CDS: 3.05 Total: -76.33 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.24 Total: -42.10 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.89 Total: -16.86 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -60.34 3.93 -56.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.168 kcal (2) G-P(sol) polarization free energy of solvation -60.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds