Wall clock time and date at job start Tue Mar 31 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35670 * 117.00250 * 2 1 4 4 C 1.37986 * 120.19347 * 0.23109 * 3 2 1 5 5 C 1.39623 * 119.93485 * 180.31662 * 4 3 2 6 6 C 1.48021 * 119.84230 * 179.70433 * 5 4 3 7 7 C 1.39603 * 120.14011 * 359.97438 * 6 5 4 8 8 C 1.37923 * 119.85491 * 180.27296 * 7 6 5 9 9 C 1.38405 * 120.13984 * 359.45696 * 8 7 6 10 10 C 1.50702 * 119.85484 * 180.25315 * 9 8 7 11 11 C 1.38354 * 120.28866 * 0.27597 * 9 8 7 12 12 C 1.50701 * 119.92691 * 180.02562 * 11 9 8 13 13 C 1.37962 * 120.14482 * 359.97438 * 11 9 8 14 14 C 1.40077 * 120.31979 * 359.42479 * 5 4 3 15 15 C 1.36118 * 120.39878 * 0.29852 * 14 5 4 16 16 C 1.40917 * 120.05512 * 359.97438 * 15 14 5 17 17 C 1.40833 * 120.15837 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99773 * 204.93481 * 17 16 15 19 19 C 1.39998 * 120.00142 * 24.93247 * 17 16 15 20 20 N 1.30831 * 120.00096 * 17.82073 * 19 17 16 21 21 Si 1.86806 * 120.00141 * 197.82002 * 19 17 16 22 22 H 1.48493 * 109.46956 * 94.69052 * 21 19 17 23 23 H 1.48503 * 109.46959 * 214.68771 * 21 19 17 24 24 H 1.48499 * 109.47032 * 334.68824 * 21 19 17 25 25 H 1.09003 * 109.47255 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47265 * 300.00148 * 1 2 3 27 27 H 1.09005 * 109.47047 * 60.00294 * 1 2 3 28 28 H 1.07997 * 120.03278 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.07141 * 0.03250 * 7 6 5 30 30 H 1.07994 * 119.93149 * 179.73473 * 8 7 6 31 31 H 1.09004 * 109.47171 * 89.99924 * 10 9 8 32 32 H 1.09000 * 109.47109 * 210.00357 * 10 9 8 33 33 H 1.09004 * 109.47223 * 329.99873 * 10 9 8 34 34 H 1.08996 * 109.47414 * 89.99893 * 12 11 9 35 35 H 1.09003 * 109.46813 * 209.99663 * 12 11 9 36 36 H 1.08999 * 109.47268 * 329.99655 * 12 11 9 37 37 H 1.08002 * 120.07779 * 179.97438 * 13 11 9 38 38 H 1.08004 * 119.80231 * 180.27689 * 14 5 4 39 39 H 1.07993 * 119.97086 * 179.97438 * 15 14 5 40 40 H 0.97002 * 120.00404 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3686 0.0048 5 6 1.9369 3.6098 -0.0019 6 6 1.1329 4.8526 -0.0033 7 6 -0.2615 4.7854 0.0014 8 6 -1.0048 5.9472 -0.0056 9 6 -0.3712 7.1777 -0.0061 10 6 -1.1898 8.4430 -0.0081 11 6 1.0104 7.2511 -0.0053 12 6 1.6918 8.5953 -0.0052 13 6 1.7656 6.0965 -0.0034 14 6 3.3357 3.6845 -0.0014 15 6 4.0862 2.5489 -0.0004 16 6 3.4577 1.2877 0.0006 17 6 4.2321 0.1113 0.0010 18 1 3.8204 -0.8063 -0.3926 19 6 5.5355 0.1315 0.5116 20 7 5.9175 1.1100 1.2915 21 14 6.7292 -1.2389 0.0794 22 1 7.5520 -0.8290 -1.0868 23 1 7.6153 -1.5079 1.2403 24 1 5.9692 -2.4690 -0.2588 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.2187 2.3164 0.0090 29 1 -0.7570 3.8259 0.0067 30 1 -2.0836 5.8966 -0.0063 31 1 -1.3882 8.7490 1.0191 32 1 -0.6394 9.2310 -0.5221 33 1 -2.1339 8.2642 -0.5228 34 1 1.8555 8.9197 1.0224 35 1 2.6503 8.5167 -0.5184 36 1 1.0627 9.3216 -0.5197 37 1 2.8440 6.1551 -0.0032 38 1 3.8217 4.6491 -0.0021 39 1 5.1641 2.6147 -0.0004 40 1 6.8207 1.1241 1.6450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240700712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:52 Heat of formation + Delta-G solvation = -9.513683 kcal Electronic energy + Delta-G solvation = -21083.341810 eV Core-core repulsion = 18020.278224 eV Total energy + Delta-G solvation = -3063.063585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.32259 -38.45517 -36.19989 -34.28918 -32.72291 -31.79729 -29.80957 -28.97638 -27.35855 -26.62348 -26.13227 -24.25696 -21.97911 -21.51009 -20.08079 -19.41139 -17.63528 -16.59194 -15.67500 -15.36174 -15.04987 -14.67368 -14.57535 -14.15011 -14.02098 -13.92696 -13.18419 -12.75521 -12.66507 -12.56675 -12.49676 -12.17538 -11.98815 -11.76847 -11.64763 -11.39113 -11.26790 -11.09960 -10.89069 -10.72721 -10.51321 -10.34099 -10.02192 -9.67486 -9.58408 -9.32698 -8.37296 -8.23266 -7.28761 -7.04292 -6.79918 -4.31060 1.55995 1.89343 2.76549 2.99209 3.02324 3.07113 3.16432 3.84687 4.21536 4.46493 4.67629 5.11657 5.16796 5.32236 5.36463 5.54466 5.58941 5.62671 5.72270 5.75682 5.80772 5.83450 5.92385 5.95947 6.00003 6.06428 6.08843 6.18193 6.33066 6.53063 6.63347 6.79709 6.91476 6.95995 7.02910 7.09819 7.26248 7.30368 7.51470 7.65224 7.75215 8.01564 8.08856 8.32844 8.56132 8.68624 8.97291 10.01670 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.004247 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.089135 B = 6590.979915 C = 7705.604310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.006 3.994 4 C -0.149 4.149 5 C -0.176 4.176 6 C 0.021 3.979 7 C -0.147 4.147 8 C -0.108 4.108 9 C -0.132 4.132 10 C -0.107 4.107 11 C -0.079 4.079 12 C -0.114 4.114 13 C -0.139 4.139 14 C -0.093 4.093 15 C -0.157 4.157 16 C 0.108 3.892 17 C -0.428 4.428 18 H 0.087 0.913 19 C 0.071 3.929 20 N -0.780 5.780 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.259 1.259 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 7.573 -1.688 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C -0.038 4.038 4 C -0.168 4.168 5 C -0.177 4.177 6 C 0.021 3.979 7 C -0.165 4.165 8 C -0.126 4.126 9 C -0.132 4.132 10 C -0.163 4.163 11 C -0.080 4.080 12 C -0.170 4.170 13 C -0.157 4.157 14 C -0.111 4.111 15 C -0.177 4.177 16 C 0.105 3.895 17 C -0.456 4.456 18 H 0.105 0.895 19 C -0.148 4.148 20 N -0.404 5.404 21 Si 0.737 3.263 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.183 1.183 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.829 7.450 -1.531 10.222 hybrid contribution 0.246 -0.477 0.000 0.537 sum -6.584 6.973 -1.531 9.712 Atomic orbital electron populations 1.22741 0.81687 1.01809 0.99959 1.85960 1.18260 1.28091 1.90431 1.19051 0.92266 0.82680 1.09838 1.20676 0.97384 0.92013 1.06765 1.17804 0.92387 0.90110 1.17404 1.18939 0.92453 0.92808 0.93741 1.21113 0.93581 0.97674 1.04108 1.20771 0.98752 0.92063 1.00988 1.19516 0.93207 0.94712 1.05762 1.20728 0.98851 0.95320 1.01436 1.19558 0.92987 0.94989 1.00418 1.20817 1.00126 0.94219 1.01839 1.21059 0.99505 0.91230 1.03882 1.20474 0.92488 0.97345 1.00803 1.20757 0.99665 0.90508 1.06729 1.17165 0.87447 0.94107 0.90753 1.19606 0.96453 0.96923 1.32632 0.89469 1.26029 0.98986 0.97156 0.92672 1.69829 1.19346 1.30333 1.20909 0.86198 0.79705 0.81315 0.79048 1.19144 1.20120 1.18289 0.89956 0.94130 0.94207 0.88107 0.86764 0.87127 0.92107 0.91823 0.92423 0.91646 0.91919 0.91671 0.86255 0.88801 0.85711 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.58 16 2 O -0.31 -7.20 9.77 -18.71 -0.18 -7.38 16 3 C 0.01 0.14 6.71 -38.43 -0.26 -0.12 16 4 C -0.15 -3.39 8.40 -39.16 -0.33 -3.72 16 5 C -0.18 -3.97 5.89 -104.68 -0.62 -4.59 16 6 C 0.02 0.41 5.88 -104.89 -0.62 -0.20 16 7 C -0.15 -2.63 9.43 -39.19 -0.37 -3.00 16 8 C -0.11 -1.69 9.68 -39.63 -0.38 -2.07 16 9 C -0.13 -1.98 5.89 -104.52 -0.62 -2.59 16 10 C -0.11 -1.20 9.60 36.01 0.35 -0.86 16 11 C -0.08 -1.25 5.87 -104.68 -0.61 -1.87 16 12 C -0.11 -1.38 9.60 36.01 0.35 -1.03 16 13 C -0.14 -2.52 9.08 -39.19 -0.36 -2.88 16 14 C -0.09 -2.16 9.35 -39.65 -0.37 -2.53 16 15 C -0.16 -3.99 8.62 -39.33 -0.34 -4.33 16 16 C 0.11 2.87 5.58 -106.66 -0.60 2.28 16 17 C -0.43 -11.23 8.70 -37.94 -0.33 -11.56 16 18 H 0.09 2.27 7.64 -52.49 -0.40 1.87 16 19 C 0.07 1.73 5.13 -17.32 -0.09 1.64 16 20 N -0.78 -19.45 10.97 55.55 0.61 -18.84 16 21 Si 0.91 18.18 29.60 -169.99 -5.03 13.14 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 27 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 28 H 0.10 2.02 4.41 -52.49 -0.23 1.79 16 29 H 0.11 1.94 6.18 -52.49 -0.32 1.62 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.64 5.93 -51.93 -0.31 0.33 16 33 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.06 0.68 5.93 -51.93 -0.31 0.37 16 37 H 0.12 2.09 6.18 -52.49 -0.32 1.77 16 38 H 0.09 1.97 6.16 -52.48 -0.32 1.64 16 39 H 0.13 3.21 6.17 -52.49 -0.32 2.89 16 40 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -28.09 325.73 -8.90 -36.99 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.00 Total: 7.04 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: -4.20 Total: -35.86 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.61 Total: -18.84 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.18 Total: -7.38 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.09 -8.90 -36.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240700712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.474 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds