Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35595 * 117.00016 * 2 1 4 4 C 1.38519 * 120.08492 * 0.02562 * 3 2 1 5 5 C 1.38025 * 120.31140 * 180.02562 * 4 3 2 6 6 C 1.39931 * 120.47116 * 0.02562 * 5 4 3 7 7 C 1.48368 * 119.92026 * 179.97438 * 6 5 4 8 8 C 1.39373 * 120.12291 * 179.72384 * 7 6 5 9 9 C 1.37994 * 119.87839 * 179.74209 * 8 7 6 10 10 C 1.38356 * 120.11929 * 0.53730 * 9 8 7 11 11 C 1.50701 * 119.87360 * 179.74067 * 10 9 8 12 12 C 1.38304 * 120.24673 * 359.71979 * 10 9 8 13 13 C 1.50694 * 119.93690 * 180.02562 * 12 10 9 14 14 C 1.38038 * 120.12406 * 0.02562 * 12 10 9 15 15 C 1.38622 * 120.15974 * 359.97438 * 6 5 4 16 16 C 1.40524 * 119.68730 * 0.02562 * 15 6 5 17 17 C 1.41184 * 120.22467 * 179.97438 * 16 15 6 18 18 H 1.08002 * 119.99328 * 154.46985 * 17 16 15 19 19 C 1.39906 * 120.00404 * 334.46677 * 17 16 15 20 20 N 1.30873 * 119.99696 * 343.17655 * 19 17 16 21 21 Si 1.86801 * 120.00051 * 163.17453 * 19 17 16 22 22 H 1.48502 * 109.46999 * 59.99742 * 21 19 17 23 23 H 1.48490 * 109.47052 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47034 * 300.00111 * 21 19 17 25 25 H 1.09000 * 109.47110 * 299.98998 * 1 2 3 26 26 H 1.09003 * 109.47401 * 60.00088 * 1 2 3 27 27 H 1.09008 * 109.46668 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.83987 * 359.74710 * 4 3 2 29 29 H 1.07999 * 119.76801 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.06449 * 0.02562 * 8 7 6 31 31 H 1.07999 * 119.94072 * 180.23224 * 9 8 7 32 32 H 1.08998 * 109.47188 * 269.97786 * 11 10 9 33 33 H 1.08999 * 109.47267 * 29.97862 * 11 10 9 34 34 H 1.09005 * 109.46887 * 149.97691 * 11 10 9 35 35 H 1.09000 * 109.46932 * 270.01706 * 13 12 10 36 36 H 1.09004 * 109.47581 * 30.01850 * 13 12 10 37 37 H 1.08997 * 109.47253 * 150.01979 * 13 12 10 38 38 H 1.07992 * 120.06243 * 180.02562 * 14 12 10 39 39 H 1.08005 * 120.15293 * 180.02562 * 15 6 5 40 40 H 0.97000 * 119.99665 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 0.0005 5 6 1.9136 3.6033 0.0000 6 6 3.3100 3.6935 -0.0016 7 6 3.9656 5.0245 -0.0027 8 6 5.3561 5.1193 0.0014 9 6 5.9606 6.3598 -0.0050 10 6 5.1889 7.5081 -0.0044 11 6 5.8548 8.8600 -0.0056 12 6 3.8087 7.4200 -0.0032 13 6 2.9749 8.6753 -0.0031 14 6 3.1934 6.1843 -0.0020 15 6 4.0823 2.5424 -0.0022 16 6 3.4563 1.2843 -0.0016 17 6 4.2318 0.1045 -0.0027 18 1 3.8236 -0.8104 0.4007 19 6 5.5291 0.1205 -0.5265 20 7 5.9099 1.1044 -1.3009 21 14 6.7174 -1.2624 -0.1205 22 1 6.1553 -2.5529 -0.5936 23 1 8.0172 -1.0116 -0.7932 24 1 6.9244 -1.3217 1.3489 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 0.2134 2.3131 -0.0032 29 1 1.3182 4.5043 0.0000 30 1 5.9595 4.2236 0.0051 31 1 7.0380 6.4344 -0.0056 32 1 6.0163 9.1864 1.0218 33 1 6.8133 8.7925 -0.5202 34 1 5.2166 9.5790 -0.5192 35 1 2.7751 8.9786 1.0246 36 1 3.5146 9.4701 -0.5181 37 1 2.0320 8.4852 -0.5157 38 1 2.1156 6.1167 -0.0015 39 1 5.1601 2.6121 -0.0030 40 1 6.8095 1.1157 -1.6637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240701500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = -8.264593 kcal Electronic energy + Delta-G solvation = -21206.992235 eV Core-core repulsion = 18143.982814 eV Total energy + Delta-G solvation = -3063.009421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.31048 -38.48480 -36.21537 -33.92943 -32.85081 -31.79435 -29.90804 -28.94235 -27.23571 -26.59365 -25.31984 -24.91355 -22.00755 -21.31905 -20.44070 -19.11047 -17.48258 -16.53793 -15.66372 -15.42639 -15.02224 -14.66904 -14.62267 -14.31127 -14.02958 -13.39749 -13.00915 -12.91213 -12.70170 -12.62587 -12.45477 -12.07309 -11.95694 -11.73282 -11.51619 -11.41194 -11.17531 -11.10312 -10.91605 -10.64508 -10.52847 -10.31499 -10.01515 -9.81517 -9.37587 -9.17628 -8.33359 -8.18247 -7.51229 -6.81110 -6.54054 -4.25823 1.58785 1.90952 2.77807 3.00439 3.09706 3.13178 3.22636 3.97294 4.26789 4.47951 4.73836 5.10487 5.18306 5.31438 5.36149 5.58975 5.59749 5.63228 5.73974 5.76589 5.81087 5.82647 5.94151 5.96952 6.02851 6.05033 6.12511 6.15087 6.28748 6.55652 6.58471 6.83563 6.94957 6.96731 7.06053 7.15195 7.29763 7.40345 7.53321 7.64810 7.73339 7.99872 8.17494 8.35963 8.67560 8.83461 9.03389 10.22474 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.005387 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.027252 B = 5196.108796 C = 6940.501453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.021 3.979 4 C -0.181 4.181 5 C -0.190 4.190 6 C -0.073 4.073 7 C -0.006 4.006 8 C -0.117 4.117 9 C -0.116 4.116 10 C -0.113 4.113 11 C -0.110 4.110 12 C -0.092 4.092 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.123 4.123 16 C 0.093 3.907 17 C -0.446 4.446 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.799 5.799 21 Si 0.909 3.091 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 9.164 1.813 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.023 4.023 4 C -0.200 4.200 5 C -0.210 4.210 6 C -0.074 4.074 7 C -0.006 4.006 8 C -0.135 4.135 9 C -0.134 4.134 10 C -0.113 4.113 11 C -0.166 4.166 12 C -0.092 4.092 13 C -0.168 4.168 14 C -0.140 4.140 15 C -0.142 4.142 16 C 0.091 3.909 17 C -0.476 4.476 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.425 5.425 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.189 1.189 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.147 0.853 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.767 9.050 1.659 9.369 hybrid contribution 0.221 -0.526 0.013 0.571 sum -1.546 8.524 1.672 8.823 Atomic orbital electron populations 1.22748 0.81691 1.01787 0.99966 1.85959 1.18271 1.28289 1.89995 1.19358 0.92417 0.82619 1.07941 1.20545 0.97455 0.92752 1.09223 1.20175 0.93108 0.95375 1.12300 1.18442 0.92848 0.91036 1.05056 1.19048 0.92784 0.92925 0.95827 1.21374 0.94511 0.97592 0.99980 1.20870 0.99016 0.92061 1.01447 1.19603 0.93030 0.95064 1.03643 1.20768 1.00037 0.94205 1.01600 1.19555 0.93255 0.94761 1.01615 1.20796 0.99031 0.95243 1.01766 1.21074 0.99573 0.91189 1.02202 1.21272 0.99616 0.89625 1.03717 1.16976 0.87290 0.93951 0.92707 1.19367 0.97057 0.96658 1.34530 0.89977 1.25873 0.98753 0.96968 0.92719 1.69821 1.19407 1.30848 1.22443 0.86348 0.78922 0.81529 0.79837 1.19017 1.20406 1.18869 0.94179 0.94104 0.89991 0.88390 0.88735 0.85315 0.86739 0.91893 0.92171 0.91725 0.91710 0.91629 0.92002 0.86239 0.85027 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.22 9.77 -18.48 -0.18 -7.40 16 3 C 0.02 0.53 6.72 -38.28 -0.26 0.27 16 4 C -0.18 -4.07 9.01 -39.56 -0.36 -4.42 16 5 C -0.19 -4.24 9.42 -39.03 -0.37 -4.61 16 6 C -0.07 -1.73 5.87 -104.95 -0.62 -2.34 16 7 C -0.01 -0.12 5.88 -104.89 -0.62 -0.74 16 8 C -0.12 -2.29 9.42 -39.25 -0.37 -2.66 16 9 C -0.12 -1.93 9.68 -39.63 -0.38 -2.31 16 10 C -0.11 -1.73 5.88 -104.55 -0.62 -2.35 16 11 C -0.11 -1.25 9.60 36.01 0.35 -0.91 16 12 C -0.09 -1.44 5.87 -104.67 -0.61 -2.06 16 13 C -0.11 -1.33 9.60 36.00 0.35 -0.98 16 14 C -0.12 -2.22 9.08 -39.25 -0.36 -2.57 16 15 C -0.12 -3.16 8.05 -38.58 -0.31 -3.47 16 16 C 0.09 2.52 5.57 -106.72 -0.59 1.92 16 17 C -0.45 -12.04 8.71 -37.84 -0.33 -12.37 16 18 H 0.08 2.20 7.65 -52.49 -0.40 1.80 16 19 C 0.07 1.85 5.15 -17.34 -0.09 1.76 16 20 N -0.80 -20.49 10.96 55.55 0.61 -19.88 16 21 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 25 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 27 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 28 H 0.10 1.90 6.27 -52.49 -0.33 1.58 16 29 H 0.09 1.85 6.17 -52.49 -0.32 1.53 16 30 H 0.13 2.63 6.19 -52.49 -0.32 2.30 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.06 0.65 5.93 -51.93 -0.31 0.35 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.67 5.93 -51.93 -0.31 0.37 16 37 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.12 2.02 6.18 -52.49 -0.32 1.70 16 39 H 0.13 3.42 4.32 -52.48 -0.23 3.19 16 40 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -28.76 325.87 -8.89 -37.66 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.01 Total: 7.08 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: -4.20 Total: -36.26 kcal Atomic # 7 Polarization: -20.49 SS G_CDS: 0.61 Total: -19.88 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.18 Total: -7.40 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.76 -8.89 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240701500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.390 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds