Wall clock time and date at job start Tue Mar 31 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38350 * 119.87792 * 2 1 4 4 C 1.37986 * 120.12099 * 180.29326 * 3 2 1 5 5 C 1.39373 * 119.87829 * 359.72885 * 4 3 2 6 6 C 1.48361 * 120.12442 * 180.02562 * 5 4 3 7 7 C 1.39384 * 120.06807 * 179.69901 * 6 5 4 8 8 C 1.37907 * 119.93291 * 179.74950 * 7 6 5 9 9 C 1.38830 * 120.06437 * 0.54898 * 8 7 6 10 10 O 1.35871 * 119.93173 * 179.72218 * 9 8 7 11 11 C 1.42901 * 117.00367 * 359.97438 * 10 9 8 12 12 C 1.50695 * 109.47693 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99881 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00279 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99976 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46841 * 90.00125 * 16 14 12 18 18 H 1.48493 * 109.46852 * 210.00323 * 16 14 12 19 19 H 1.48496 * 109.46900 * 330.00495 * 16 14 12 20 20 C 1.38823 * 120.13310 * 359.70415 * 9 8 7 21 21 C 1.37909 * 120.06568 * 0.02562 * 20 9 8 22 22 C 1.39332 * 119.75483 * 359.97438 * 5 4 3 23 23 C 1.38033 * 119.87665 * 359.97438 * 22 5 4 24 24 C 1.50703 * 119.93917 * 180.02562 * 23 22 5 25 25 H 1.08999 * 109.47304 * 270.24931 * 1 2 3 26 26 H 1.09001 * 109.47156 * 30.25598 * 1 2 3 27 27 H 1.09000 * 109.46971 * 150.25278 * 1 2 3 28 28 H 1.08000 * 119.93519 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.06029 * 179.70267 * 4 3 2 30 30 H 1.08005 * 120.02917 * 0.02562 * 7 6 5 31 31 H 1.07999 * 119.96684 * 180.28056 * 8 7 6 32 32 H 1.09000 * 109.47461 * 300.00526 * 11 10 9 33 33 H 1.09003 * 109.46862 * 59.99993 * 11 10 9 34 34 H 0.96996 * 119.99578 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.96657 * 179.97438 * 20 9 8 36 36 H 1.08001 * 120.03025 * 180.02562 * 21 20 9 37 37 H 1.08005 * 120.06188 * 180.02562 * 22 5 4 38 38 H 1.09002 * 109.47152 * 90.00175 * 24 23 22 39 39 H 1.09001 * 109.46980 * 330.00275 * 24 23 22 40 40 H 1.09004 * 109.47113 * 210.00256 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1996 0.0000 4 6 3.5760 1.2055 -0.0061 5 6 4.2754 0.0000 -0.0066 6 6 5.7590 -0.0001 -0.0125 7 6 6.4574 -1.2064 -0.0067 8 6 7.8364 -1.2032 -0.0175 9 6 8.5291 -0.0001 -0.0227 10 8 9.8878 -0.0002 -0.0276 11 6 10.5366 -1.2734 -0.0266 12 6 12.0306 -1.0761 -0.0332 13 1 12.4434 -0.0781 -0.0373 14 6 12.8705 -2.1695 -0.0329 15 7 12.3678 -3.3848 -0.0273 16 14 14.7224 -1.9248 -0.0403 17 1 15.2181 -1.8557 1.3578 18 1 15.3694 -3.0641 -0.7393 19 1 15.0517 -0.6600 -0.7453 20 6 7.8364 1.2029 -0.0232 21 6 6.4573 1.2061 -0.0181 22 6 3.5762 -1.2052 -0.0003 23 6 2.1959 -1.1992 0.0068 24 6 1.4382 -2.5019 0.0142 25 1 -0.3634 0.0045 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6531 2.1332 0.0004 29 1 4.1130 2.1425 -0.0110 30 1 5.9189 -2.1426 0.0018 31 1 8.3780 -2.1376 -0.0175 32 1 10.2470 -1.8281 0.8659 33 1 10.2405 -1.8328 -0.9140 34 1 12.9587 -4.1540 -0.0275 35 1 8.3780 2.1373 -0.0269 36 1 5.9190 2.1424 -0.0189 37 1 4.1132 -2.1423 -0.0002 38 1 1.2608 -2.8133 1.0436 39 1 2.0222 -3.2648 -0.5006 40 1 0.4835 -2.3698 -0.4951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240701792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:55 Heat of formation + Delta-G solvation = -9.529738 kcal Electronic energy + Delta-G solvation = -20241.213983 eV Core-core repulsion = 17178.149701 eV Total energy + Delta-G solvation = -3063.064281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00891 -39.03797 -36.81070 -33.66704 -32.90263 -32.36119 -30.72497 -29.60977 -27.87399 -27.18750 -25.76161 -23.60315 -22.76704 -21.72495 -21.13844 -19.76586 -17.68301 -16.61502 -16.22786 -15.81221 -15.41847 -14.89679 -14.65682 -14.45257 -14.33964 -14.01745 -13.71640 -13.51743 -13.00999 -12.90017 -12.76989 -12.62914 -12.50168 -12.11401 -11.90437 -11.66372 -11.63953 -11.05485 -11.04142 -11.01108 -10.86863 -10.43673 -10.25598 -10.14915 -9.30943 -8.90468 -8.73467 -8.67920 -8.51860 -7.18954 -6.27643 -4.31525 0.91147 1.37199 1.73693 2.17875 3.22562 3.27756 3.32602 3.70020 4.12290 4.32966 4.48410 4.66377 4.67989 4.78869 4.91860 5.04348 5.09655 5.16207 5.25519 5.29213 5.32680 5.47542 5.50399 5.57270 5.64892 5.70209 5.71254 5.86656 6.02376 6.09275 6.10892 6.31451 6.39813 6.47282 6.58050 6.67988 6.73320 6.94674 6.97810 7.01813 7.10597 7.22092 7.65239 7.92034 8.42271 8.80821 9.33841 10.83620 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.040655 B = 0.002766 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.558631 B =10121.716055 C =10784.519726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.112 4.112 4 C -0.124 4.124 5 C -0.018 4.018 6 C -0.117 4.117 7 C -0.064 4.064 8 C -0.212 4.212 9 C 0.161 3.839 10 O -0.315 6.315 11 C 0.191 3.809 12 C -0.525 4.525 13 H 0.071 0.929 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.914 3.086 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.270 1.270 20 C -0.170 4.170 21 C -0.069 4.069 22 C -0.119 4.119 23 C -0.083 4.083 24 C -0.117 4.117 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.267 0.733 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.147 5.075 0.089 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.130 4.130 4 C -0.142 4.142 5 C -0.018 4.018 6 C -0.118 4.118 7 C -0.082 4.082 8 C -0.231 4.231 9 C 0.113 3.887 10 O -0.227 6.227 11 C 0.119 3.881 12 C -0.563 4.563 13 H 0.089 0.911 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.740 3.260 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.188 4.188 21 C -0.086 4.086 22 C -0.136 4.136 23 C -0.083 4.083 24 C -0.174 4.174 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.927 5.024 0.082 22.496 hybrid contribution 1.022 -0.287 0.026 1.062 sum -20.905 4.737 0.107 21.435 Atomic orbital electron populations 1.20823 0.91621 1.02563 1.02056 1.19723 0.95738 0.92708 1.02133 1.20886 0.93994 0.97245 1.00891 1.21173 0.93938 0.97565 1.01512 1.18765 0.91922 0.93069 0.98014 1.18486 0.91062 0.93536 1.08689 1.20957 0.93384 0.97032 0.96798 1.21417 0.94783 0.98449 1.08427 1.19404 0.84732 0.93475 0.91105 1.86123 1.13861 1.37234 1.85480 1.20683 0.92470 0.77976 0.96969 1.20974 0.88956 0.94053 1.52311 0.91104 1.24943 1.00038 0.94602 0.94634 1.69948 1.35905 0.97895 1.49501 0.86234 0.83284 0.78027 0.78408 1.20257 1.20879 1.19472 1.20360 0.93428 0.96619 1.08420 1.20875 0.93001 0.97046 0.97723 1.21100 0.93230 0.97747 1.01560 1.19645 0.93496 0.94807 1.00330 1.20862 0.99987 0.94227 1.02283 0.91460 0.91877 0.91350 0.86267 0.85867 0.86134 0.84629 0.95966 0.95956 0.92293 0.85407 0.85834 0.85813 0.91235 0.91587 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.59 36.01 0.35 -0.50 16 2 C -0.10 -1.07 5.88 -104.56 -0.62 -1.69 16 3 C -0.11 -1.19 9.68 -39.63 -0.38 -1.58 16 4 C -0.12 -1.49 9.43 -39.25 -0.37 -1.86 16 5 C -0.02 -0.24 5.88 -104.90 -0.62 -0.86 16 6 C -0.12 -1.81 5.88 -104.88 -0.62 -2.42 16 7 C -0.06 -1.04 9.42 -39.28 -0.37 -1.41 16 8 C -0.21 -4.06 9.02 -39.48 -0.36 -4.41 16 9 C 0.16 3.32 6.69 -39.15 -0.26 3.06 16 10 O -0.31 -7.64 10.12 -19.34 -0.20 -7.84 16 11 C 0.19 5.09 4.49 36.00 0.16 5.25 16 12 C -0.53 -14.98 9.43 -34.44 -0.32 -15.31 16 13 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 16 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.17 -2.94 9.97 -39.49 -0.39 -3.33 16 21 C -0.07 -1.03 9.42 -39.28 -0.37 -1.40 16 22 C -0.12 -1.49 9.08 -39.25 -0.36 -1.85 16 23 C -0.08 -0.91 5.88 -104.67 -0.61 -1.53 16 24 C -0.12 -0.97 9.60 36.01 0.35 -0.62 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.07 0.45 5.93 -51.93 -0.31 0.14 16 28 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.12 1.28 6.20 -52.49 -0.33 0.95 16 30 H 0.12 1.67 6.20 -52.48 -0.33 1.34 16 31 H 0.14 2.71 6.28 -52.49 -0.33 2.38 16 32 H 0.02 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.02 0.62 7.65 -51.93 -0.40 0.22 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.12 1.48 6.20 -52.49 -0.33 1.15 16 37 H 0.12 1.44 6.20 -52.48 -0.33 1.11 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.07 0.48 5.92 -51.93 -0.31 0.17 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -30.30 331.99 -9.49 -39.78 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.12 Total: 0.81 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -4.89 Total: -28.87 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.74 Total: -25.10 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.20 Total: -7.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.30 -9.49 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240701792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.255 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds