Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35810 * 117.00150 * 2 1 4 4 C 1.38988 * 119.90832 * 359.97438 * 3 2 1 5 5 C 1.37750 * 120.08437 * 180.02562 * 4 3 2 6 6 C 1.39719 * 119.91266 * 359.97438 * 5 4 3 7 7 C 1.47881 * 120.08387 * 179.97438 * 6 5 4 8 8 C 1.40014 * 119.88369 * 180.02562 * 7 6 5 9 9 C 1.36208 * 120.11710 * 179.76236 * 8 7 6 10 10 C 1.40968 * 119.87972 * 0.46970 * 9 8 7 11 11 C 1.40997 * 120.11501 * 179.78839 * 10 9 8 12 12 H 1.08000 * 120.00110 * 209.64321 * 11 10 9 13 13 C 1.39981 * 119.99655 * 29.63837 * 11 10 9 14 14 N 1.30818 * 119.99312 * 197.10987 * 13 11 10 15 15 Si 1.86796 * 120.00078 * 17.11254 * 13 11 10 16 16 H 1.48493 * 109.47348 * 269.99580 * 15 13 11 17 17 H 1.48499 * 109.47048 * 30.00095 * 15 13 11 18 18 H 1.48504 * 109.46877 * 149.99750 * 15 13 11 19 19 C 1.40934 * 119.77298 * 359.50846 * 10 9 8 20 20 C 1.50700 * 120.05963 * 180.27619 * 19 10 9 21 21 C 1.36234 * 119.88305 * 0.25481 * 19 10 9 22 22 C 1.39672 * 119.82454 * 0.25522 * 6 5 4 23 23 C 1.37789 * 119.91557 * 359.52916 * 22 6 5 24 24 C 1.50697 * 119.95919 * 180.21017 * 23 22 6 25 25 H 1.09004 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47616 * 300.00047 * 1 2 3 27 27 H 1.09008 * 109.47153 * 60.00347 * 1 2 3 28 28 H 1.07994 * 119.95589 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.04259 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.94186 * 0.02562 * 8 7 6 31 31 H 1.07995 * 120.06041 * 180.25284 * 9 8 7 32 32 H 0.96996 * 120.00626 * 355.43042 * 14 13 11 33 33 H 1.08997 * 109.47506 * 90.00030 * 20 19 10 34 34 H 1.09000 * 109.47003 * 210.00393 * 20 19 10 35 35 H 1.09005 * 109.46982 * 330.00134 * 20 19 10 36 36 H 1.08001 * 119.94347 * 180.02562 * 21 19 10 37 37 H 1.08001 * 120.04003 * 179.72156 * 22 6 5 38 38 H 1.09001 * 109.47326 * 270.23150 * 24 23 22 39 39 H 1.08994 * 109.46906 * 30.23556 * 24 23 22 40 40 H 1.09000 * 109.46788 * 150.24115 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2867 2.3745 -0.0005 5 6 1.9084 3.6038 -0.0011 6 6 3.3035 3.6790 -0.0005 7 6 3.9748 4.9967 -0.0017 8 6 5.3732 5.0672 -0.0017 9 6 5.9964 6.2783 -0.0076 10 6 5.2310 7.4621 -0.0037 11 6 5.8710 8.7184 -0.0054 12 1 5.3936 9.5682 0.4597 13 6 7.1252 8.8641 -0.6097 14 7 7.8666 9.9062 -0.3345 15 14 7.7400 7.5707 -1.8091 16 1 8.4943 6.5277 -1.0686 17 1 6.5832 6.9477 -2.5011 18 1 8.6312 8.2087 -2.8111 19 6 3.8237 7.3855 -0.0042 20 6 2.9991 8.6468 -0.0064 21 6 3.2101 6.1691 -0.0032 22 6 4.0624 2.5065 -0.0048 23 6 3.4332 1.2807 0.0002 24 6 4.2511 0.0149 0.0003 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 0.2084 2.3155 -0.0005 29 1 1.3181 4.5082 -0.0011 30 1 5.9587 4.1597 -0.0013 31 1 7.0751 6.3316 -0.0117 32 1 7.5210 10.6104 0.2360 33 1 2.8007 8.9495 -1.0346 34 1 2.0552 8.4647 0.5073 35 1 3.5450 9.4387 0.5065 36 1 2.1318 6.1093 -0.0040 37 1 5.1411 2.5606 -0.0090 38 1 4.4482 -0.2904 -1.0273 39 1 5.1957 0.1929 0.5141 40 1 3.7007 -0.7732 0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240865769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = -14.594527 kcal Electronic energy + Delta-G solvation = -21024.026070 eV Core-core repulsion = 17960.742162 eV Total energy + Delta-G solvation = -3063.283907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98849 -38.43177 -36.95056 -33.99976 -32.73402 -32.07037 -30.79303 -28.89836 -27.55270 -26.91237 -25.82672 -24.33653 -22.01904 -21.81844 -20.36560 -19.19414 -18.26183 -17.75470 -16.01920 -15.73359 -15.67867 -14.80472 -14.48999 -14.24525 -13.77356 -13.53425 -13.43049 -13.18981 -12.89213 -12.83411 -12.36515 -12.08743 -12.03065 -11.96086 -11.84905 -11.44814 -11.39912 -11.19599 -10.96323 -10.74918 -10.61468 -10.30697 -10.02813 -9.85374 -9.32254 -9.12621 -8.56141 -8.26181 -7.72554 -7.50133 -6.96968 -4.57813 1.48711 1.67186 2.65696 2.72852 3.15505 3.31096 3.42445 3.50212 3.93791 4.08181 4.60949 4.94719 5.00774 5.09773 5.13357 5.30642 5.35413 5.37775 5.55745 5.69444 5.79323 5.81503 5.86296 5.88211 5.98265 6.16162 6.17353 6.38359 6.43920 6.50537 6.58175 6.66941 6.71064 6.80339 6.90748 6.99933 7.10667 7.33138 7.39273 7.52507 7.66679 7.70359 7.80115 7.88918 8.28150 8.44469 8.64817 9.87644 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.004118 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.213341 B = 6798.422850 C = 7624.890045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.084 3.916 4 C -0.191 4.191 5 C -0.110 4.110 6 C -0.009 4.009 7 C -0.196 4.196 8 C -0.054 4.054 9 C -0.247 4.247 10 C 0.106 3.894 11 C -0.498 4.498 12 H 0.083 0.917 13 C 0.041 3.959 14 N -0.808 5.808 15 Si 1.074 2.926 16 H -0.275 1.275 17 H -0.261 1.261 18 H -0.289 1.289 19 C -0.189 4.189 20 C -0.086 4.086 21 C -0.057 4.057 22 C -0.108 4.108 23 C -0.106 4.106 24 C -0.102 4.102 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.287 0.713 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.432 -13.173 -0.350 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.040 3.960 4 C -0.210 4.210 5 C -0.128 4.128 6 C -0.010 4.010 7 C -0.197 4.197 8 C -0.072 4.072 9 C -0.266 4.266 10 C 0.103 3.897 11 C -0.526 4.526 12 H 0.101 0.899 13 C -0.179 4.179 14 N -0.430 5.430 15 Si 0.900 3.100 16 H -0.202 1.202 17 H -0.185 1.185 18 H -0.217 1.217 19 C -0.190 4.190 20 C -0.142 4.142 21 C -0.075 4.075 22 C -0.125 4.125 23 C -0.106 4.106 24 C -0.158 4.158 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.018 -13.647 -1.236 15.876 hybrid contribution -1.628 0.825 1.123 2.143 sum -9.645 -12.822 -0.113 16.045 Atomic orbital electron populations 1.22939 0.79341 1.03158 1.01071 1.85970 1.20507 1.27395 1.89578 1.18742 0.91656 0.83762 1.01836 1.21018 0.99174 0.92378 1.08387 1.20972 0.94157 0.96582 1.01137 1.18862 0.92315 0.92862 0.96920 1.18007 0.92597 0.90405 1.18671 1.20452 0.93274 0.96489 0.96969 1.20822 0.98678 0.92712 1.14385 1.17701 0.91150 0.93029 0.87863 1.20750 1.03494 0.96507 1.31857 0.89936 1.27387 0.92249 1.00837 0.97463 1.70536 1.35741 1.08157 1.28547 0.83562 0.77190 0.73734 0.75492 1.20195 1.18547 1.21684 1.19472 0.93828 0.93704 1.11998 1.20423 0.97250 0.96232 1.00330 1.20343 0.97290 0.91818 0.98078 1.20954 0.99717 0.90359 1.01518 1.19081 0.90391 0.95805 1.05356 1.20568 0.98719 0.94676 1.01860 0.88850 0.93069 0.93053 0.86262 0.86062 0.88379 0.87515 0.90106 0.93276 0.94155 0.92308 0.88547 0.85531 0.91796 0.91913 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.31 9.52 -19.14 -0.18 -4.49 16 3 C 0.08 1.28 6.67 -39.04 -0.26 1.02 16 4 C -0.19 -2.83 9.02 -39.48 -0.36 -3.18 16 5 C -0.11 -1.83 9.42 -39.21 -0.37 -2.20 16 6 C -0.01 -0.17 5.88 -104.86 -0.62 -0.79 16 7 C -0.20 -4.10 5.90 -104.63 -0.62 -4.72 16 8 C -0.05 -1.16 9.36 -39.65 -0.37 -1.53 16 9 C -0.25 -5.83 7.19 -39.28 -0.28 -6.11 16 10 C 0.11 2.61 5.12 -106.80 -0.55 2.07 16 11 C -0.50 -12.82 8.77 -37.88 -0.33 -13.15 16 12 H 0.08 2.16 6.51 -52.49 -0.34 1.82 16 13 C 0.04 1.04 5.42 -17.33 -0.09 0.95 16 14 N -0.81 -21.01 13.65 55.55 0.76 -20.25 16 15 Si 1.07 23.84 24.90 -169.99 -4.23 19.61 16 16 H -0.28 -5.80 6.44 56.52 0.36 -5.43 16 17 H -0.26 -5.82 7.02 56.52 0.40 -5.43 16 18 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 19 C -0.19 -4.28 5.90 -104.32 -0.62 -4.90 16 20 C -0.09 -1.69 9.61 36.01 0.35 -1.35 16 21 C -0.06 -1.20 8.99 -39.65 -0.36 -1.56 16 22 C -0.11 -1.82 9.07 -39.21 -0.36 -2.18 16 23 C -0.11 -1.64 5.89 -104.53 -0.62 -2.26 16 24 C -0.10 -1.28 9.78 36.00 0.35 -0.93 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 27 H 0.05 0.44 7.65 -51.92 -0.40 0.04 16 28 H 0.12 1.44 6.28 -52.49 -0.33 1.11 16 29 H 0.12 1.87 6.18 -52.48 -0.32 1.55 16 30 H 0.10 1.85 6.17 -52.49 -0.32 1.52 16 31 H 0.11 2.48 4.45 -52.49 -0.23 2.25 16 32 H 0.29 7.23 8.73 -40.82 -0.36 6.88 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.06 1.20 6.29 -51.93 -0.33 0.87 16 36 H 0.10 1.78 6.17 -52.49 -0.32 1.45 16 37 H 0.13 2.00 6.17 -52.49 -0.32 1.68 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.06 0.80 7.52 -51.93 -0.39 0.40 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -27.39 320.80 -7.94 -35.32 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.01 Total: 4.51 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: -4.10 Total: -39.54 kcal Atomic # 7 Polarization: -21.01 SS G_CDS: 0.76 Total: -20.25 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.18 Total: -4.49 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.23 Total: 19.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.39 -7.94 -35.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240865769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.729 kcal (2) G-P(sol) polarization free energy of solvation -27.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds