Wall clock time and date at job start Tue Mar 31 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00220 * 2 1 4 4 C 1.38550 * 119.99684 * 0.27514 * 3 2 1 5 5 C 1.39232 * 119.82012 * 180.20728 * 4 3 2 6 6 C 1.48398 * 120.09293 * 179.79403 * 5 4 3 7 7 C 1.39356 * 120.11989 * 359.74496 * 6 5 4 8 8 C 1.38000 * 119.87974 * 179.97438 * 7 6 5 9 9 C 1.38346 * 120.11693 * 359.72797 * 8 7 6 10 10 C 1.38290 * 120.24364 * 0.54886 * 9 8 7 11 11 C 1.50700 * 119.93820 * 179.72773 * 10 9 8 12 12 C 1.50706 * 109.47062 * 269.72221 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 C 1.38044 * 120.12277 * 359.45091 * 10 9 8 21 21 C 1.39382 * 119.81337 * 359.51859 * 5 4 3 22 22 C 1.38018 * 119.98903 * 0.25168 * 21 5 4 23 23 C 1.38255 * 120.18327 * 359.97438 * 22 21 5 24 24 C 1.50696 * 119.90586 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.47064 * 299.99989 * 1 2 3 26 26 H 1.08991 * 109.47321 * 60.00017 * 1 2 3 27 27 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.08857 * 0.02562 * 4 3 2 29 29 H 1.08009 * 120.05885 * 359.96206 * 7 6 5 30 30 H 1.07994 * 119.93859 * 180.02562 * 8 7 6 31 31 H 1.07996 * 119.87417 * 180.30014 * 9 8 7 32 32 H 1.09004 * 109.47406 * 149.72927 * 11 10 9 33 33 H 1.08993 * 109.47274 * 29.72553 * 11 10 9 34 34 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 35 35 H 1.08000 * 120.05947 * 180.29625 * 20 10 9 36 36 H 1.08003 * 120.00092 * 180.22595 * 21 5 4 37 37 H 1.08000 * 119.90996 * 179.97438 * 22 21 5 38 38 H 1.08998 * 109.47423 * 90.00165 * 24 23 22 39 39 H 1.09001 * 109.46616 * 210.00469 * 24 23 22 40 40 H 1.09001 * 109.47308 * 329.99339 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3728 0.0058 5 6 1.9274 3.6114 0.0014 6 6 1.1250 4.8598 0.0029 7 6 -0.2671 4.7963 0.0033 8 6 -1.0083 5.9603 0.0053 9 6 -0.3718 7.1886 0.0125 10 6 1.0094 7.2574 0.0063 11 6 1.6956 8.5991 0.0080 12 6 1.9239 9.0484 -1.4124 13 1 1.6036 8.4249 -2.2339 14 6 2.5405 10.2558 -1.6629 15 7 2.9248 11.0180 -0.6624 16 14 2.8228 10.8130 -3.4234 17 1 3.4926 12.1384 -3.4218 18 1 3.6823 9.8248 -4.1235 19 1 1.5179 10.9186 -4.1243 20 6 1.7607 6.0994 0.0043 21 6 3.3197 3.6755 0.0014 22 6 4.0638 2.5130 0.0005 23 6 3.4320 1.2833 0.0001 24 6 4.2506 0.0181 -0.0003 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3179 0.0107 29 1 -0.7650 3.8378 0.0020 30 1 -2.0872 5.9123 0.0061 31 1 -0.9557 8.0971 0.0189 32 1 2.6537 8.5167 0.5212 33 1 1.0689 9.3271 0.5231 34 1 2.7780 10.7289 0.2518 35 1 2.8393 6.1543 0.0044 36 1 3.8162 4.6346 0.0017 37 1 5.1426 2.5642 0.0000 38 1 4.4480 -0.2874 1.0272 39 1 3.7007 -0.7702 -0.5145 40 1 5.1952 0.1965 -0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241033534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:41 Heat of formation + Delta-G solvation = -10.516751 kcal Electronic energy + Delta-G solvation = -20743.048278 eV Core-core repulsion = 17679.941196 eV Total energy + Delta-G solvation = -3063.107082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39054 -38.86222 -37.29117 -34.14937 -33.17681 -31.26941 -30.22779 -30.05349 -27.79083 -26.67720 -26.14326 -23.36474 -22.64337 -22.14375 -20.82402 -20.05305 -17.77450 -16.81529 -16.35562 -16.24323 -15.90741 -15.08091 -14.72530 -14.54694 -14.00895 -13.76215 -13.67708 -13.53639 -13.27469 -12.93431 -12.65743 -12.41781 -12.21313 -12.10814 -11.81123 -11.55496 -11.36314 -11.09961 -11.08397 -10.99368 -10.68024 -10.37295 -10.16517 -9.85649 -9.25784 -8.94655 -8.41345 -8.39815 -7.97790 -7.56615 -6.41232 -4.12777 0.88908 1.44899 1.97129 2.23369 3.15561 3.42558 3.43917 3.62861 3.76730 4.42220 4.56359 4.63401 4.72362 4.92157 4.96713 4.98874 5.16642 5.18091 5.30794 5.34466 5.38181 5.44936 5.52734 5.58488 5.62884 5.74725 5.84596 5.94665 6.02131 6.12865 6.23459 6.46890 6.49516 6.53112 6.60744 6.75500 6.93249 6.98112 7.08027 7.13563 7.31836 7.53985 7.59071 8.08398 8.39880 8.80364 9.58215 10.97771 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.003753 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.187075 B = 7458.298965 C = 8233.909236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.124 3.876 4 C -0.200 4.200 5 C 0.005 3.995 6 C -0.061 4.061 7 C -0.134 4.134 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.029 4.029 11 C 0.035 3.965 12 C -0.593 4.593 13 H 0.051 0.949 14 C 0.017 3.983 15 N -0.910 5.910 16 Si 1.070 2.930 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.287 1.287 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.080 4.080 23 C -0.127 4.127 24 C -0.101 4.101 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.269 0.731 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 -20.732 2.453 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.079 3.921 4 C -0.219 4.219 5 C 0.005 3.995 6 C -0.061 4.061 7 C -0.152 4.152 8 C -0.140 4.140 9 C -0.135 4.135 10 C -0.029 4.029 11 C -0.002 4.002 12 C -0.631 4.631 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.546 5.546 16 Si 0.897 3.103 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.214 1.214 20 C -0.123 4.123 21 C -0.162 4.162 22 C -0.098 4.098 23 C -0.127 4.127 24 C -0.158 4.158 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.685 -19.698 1.534 19.939 hybrid contribution -1.048 -1.040 0.866 1.712 sum -3.733 -20.739 2.401 21.208 Atomic orbital electron populations 1.23038 0.78685 1.03663 1.01486 1.86028 1.21085 1.26915 1.88999 1.18673 0.91706 0.83919 0.97826 1.21243 0.99958 0.91464 1.09212 1.18643 0.92892 0.91688 0.96246 1.18678 0.92864 0.91746 1.02769 1.20903 0.92879 0.97745 1.03655 1.20961 0.99123 0.92558 1.01360 1.21168 0.94652 0.97259 1.00389 1.20402 0.93365 0.96810 0.92294 1.18486 0.94863 0.88357 0.98482 1.21890 1.43217 1.07027 0.91004 0.93094 1.25880 0.93559 0.93275 1.05933 1.70792 1.44602 1.38988 1.00242 0.83531 0.76568 0.76310 0.73854 1.20675 1.21332 1.21365 1.21141 0.99933 0.90860 1.00371 1.21262 0.93064 0.98920 1.02908 1.20809 0.99760 0.90829 0.98452 1.19242 0.90500 0.96156 1.06841 1.20570 0.98696 0.94553 1.01989 0.92694 0.92661 0.88399 0.85265 0.87035 0.86687 0.86340 0.96203 0.96164 0.92060 0.86029 0.85142 0.85274 0.91673 0.91433 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.72 9.53 -19.41 -0.18 -3.91 16 3 C 0.12 1.64 6.65 -39.26 -0.26 1.38 16 4 C -0.20 -2.77 8.41 -39.10 -0.33 -3.10 16 5 C 0.01 0.09 5.87 -104.92 -0.62 -0.53 16 6 C -0.06 -1.06 5.88 -104.90 -0.62 -1.68 16 7 C -0.13 -2.15 9.43 -39.25 -0.37 -2.52 16 8 C -0.12 -2.01 10.03 -39.63 -0.40 -2.40 16 9 C -0.12 -2.27 9.69 -39.52 -0.38 -2.65 16 10 C -0.03 -0.63 5.06 -104.67 -0.53 -1.16 16 11 C 0.03 0.89 4.41 -29.03 -0.13 0.76 16 12 C -0.59 -16.79 9.09 -34.44 -0.31 -17.10 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 15 N -0.91 -27.49 13.65 55.43 0.76 -26.73 16 16 Si 1.07 25.22 29.90 -169.99 -5.08 20.14 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.11 -2.10 9.08 -39.25 -0.36 -2.45 16 21 C -0.14 -2.13 9.42 -39.24 -0.37 -2.50 16 22 C -0.08 -1.03 9.68 -39.66 -0.38 -1.42 16 23 C -0.13 -1.61 5.90 -104.41 -0.62 -2.23 16 24 C -0.10 -1.01 9.78 36.00 0.35 -0.66 16 25 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 26 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.13 1.55 4.44 -52.49 -0.23 1.32 16 29 H 0.11 1.46 6.21 -52.48 -0.33 1.13 16 30 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.02 0.52 7.96 -51.93 -0.41 0.11 16 33 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 34 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 35 H 0.12 2.36 6.20 -52.49 -0.33 2.03 16 36 H 0.13 1.91 6.20 -52.48 -0.33 1.58 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.67 7.52 -51.93 -0.39 0.28 16 40 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -31.65 333.36 -9.16 -40.81 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.25 Total: 1.31 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: -4.42 Total: -36.65 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.76 Total: -26.73 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.18 Total: -3.91 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.65 -9.16 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241033534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.293 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds