Wall clock time and date at job start Tue Mar 31 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35898 * 117.00324 * 2 1 4 4 C 1.38463 * 119.98540 * 0.02562 * 3 2 1 5 5 C 1.39493 * 119.79786 * 179.97438 * 4 3 2 6 6 C 1.48001 * 120.11625 * 179.97438 * 5 4 3 7 7 C 1.39952 * 119.87916 * 310.00068 * 6 5 4 8 8 C 1.36238 * 120.11796 * 180.24965 * 7 6 5 9 9 C 1.40941 * 119.87595 * 359.50797 * 8 7 6 10 10 C 1.41033 * 120.11874 * 180.27511 * 9 8 7 11 11 H 1.08002 * 120.00016 * 204.80818 * 10 9 8 12 12 C 1.40014 * 120.00063 * 24.79987 * 10 9 8 13 13 N 1.30793 * 119.99521 * 17.81869 * 12 10 9 14 14 Si 1.86796 * 120.00241 * 197.82538 * 12 10 9 15 15 H 1.48505 * 109.46955 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47620 * 120.00090 * 14 12 10 17 17 H 1.48504 * 109.46886 * 239.99963 * 14 12 10 18 18 C 1.40908 * 119.76889 * 0.51263 * 9 8 7 19 19 C 1.36274 * 119.87308 * 359.73668 * 18 9 8 20 20 C 1.50703 * 119.93870 * 179.97438 * 19 18 9 21 21 C 1.39650 * 119.77212 * 0.25696 * 5 4 3 22 22 C 1.37947 * 119.95823 * 359.50987 * 21 5 4 23 23 C 1.38323 * 120.20356 * 0.48829 * 22 21 5 24 24 C 1.50700 * 119.87925 * 179.72162 * 23 22 21 25 25 H 1.09003 * 109.47050 * 299.99851 * 1 2 3 26 26 H 1.08999 * 109.47358 * 59.99840 * 1 2 3 27 27 H 1.08998 * 109.47589 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.10139 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.93971 * 359.97438 * 7 6 5 30 30 H 1.08000 * 120.05733 * 179.72305 * 8 7 6 31 31 H 0.97011 * 119.99615 * 179.97438 * 13 12 10 32 32 H 1.07994 * 120.07015 * 179.75616 * 18 9 8 33 33 H 1.08993 * 109.47517 * 270.02516 * 20 19 18 34 34 H 1.08999 * 109.46718 * 30.02415 * 20 19 18 35 35 H 1.09000 * 109.46827 * 150.02136 * 20 19 18 36 36 H 1.07990 * 120.01997 * 179.72859 * 21 5 4 37 37 H 1.08005 * 119.90020 * 180.21317 * 22 21 5 38 38 H 1.09003 * 109.47175 * 270.02076 * 24 23 22 39 39 H 1.08997 * 109.47515 * 30.02325 * 24 23 22 40 40 H 1.09000 * 109.47092 * 150.02469 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3719 0.0005 5 6 1.9290 3.6127 0.0011 6 6 1.1296 4.8582 0.0011 7 6 0.0969 5.0239 -0.9288 8 6 -0.6387 6.1706 -0.9365 9 6 -0.3649 7.1866 0.0011 10 6 -1.1270 8.3733 0.0015 11 1 -0.7081 9.2840 0.4035 12 6 -2.4266 8.3709 -0.5194 13 7 -3.0638 7.2403 -0.6818 14 14 -3.2502 9.9822 -0.9827 15 1 -2.3244 11.1094 -0.7039 16 1 -3.5906 9.9666 -2.4281 17 1 -4.4905 10.1517 -0.1839 18 6 0.6763 7.0148 0.9348 19 6 1.4093 5.8660 0.9304 20 6 2.5236 5.6810 1.9280 21 6 3.3241 3.6756 -0.0044 22 6 4.0661 2.5127 0.0000 23 6 3.4327 1.2830 -0.0005 24 6 4.2505 0.0173 -0.0021 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2130 2.3171 0.0005 29 1 -0.1143 4.2432 -1.6445 30 1 -1.4325 6.2992 -1.6575 31 1 -3.9645 7.2386 -1.0424 32 1 0.8929 7.7919 1.6529 33 1 3.4544 6.0618 1.5080 34 1 2.2874 6.2263 2.8418 35 1 2.6347 4.6209 2.1560 36 1 3.8217 4.6340 -0.0084 37 1 5.1450 2.5625 -0.0008 38 1 4.4472 -0.2870 -1.0301 39 1 5.1954 0.1945 0.5115 40 1 3.7003 -0.7714 0.5112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241036932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:49 Heat of formation + Delta-G solvation = -14.680088 kcal Electronic energy + Delta-G solvation = -21189.929528 eV Core-core repulsion = 18126.641910 eV Total energy + Delta-G solvation = -3063.287617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91705 -38.14998 -36.76965 -34.25302 -32.53392 -31.42304 -29.85285 -29.58626 -27.40651 -26.74213 -25.86993 -24.29060 -21.86902 -21.30338 -20.30088 -19.89347 -17.34607 -16.94881 -15.92216 -15.55462 -15.37024 -15.16296 -14.46112 -13.98917 -13.84669 -13.58191 -13.28354 -13.18543 -12.76907 -12.56290 -12.11863 -12.01267 -11.88984 -11.76278 -11.66634 -11.54216 -11.19512 -11.04795 -11.00064 -10.82995 -10.67483 -10.36093 -10.27861 -9.65458 -9.48162 -9.27087 -8.36054 -7.80611 -7.46678 -7.11694 -6.89469 -4.43805 1.65391 1.87893 2.70035 3.00349 3.03014 3.05903 3.12216 3.52296 3.83299 4.18709 4.53821 5.14739 5.16819 5.28936 5.31622 5.52431 5.54066 5.60517 5.64013 5.78814 5.82357 5.94673 5.98005 5.99626 6.04550 6.18712 6.32506 6.33903 6.54884 6.58911 6.73428 6.86085 6.91665 6.93418 7.05436 7.16136 7.28332 7.30414 7.56074 7.69137 7.87617 7.97078 8.06600 8.18448 8.52891 8.76550 8.87743 10.03335 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.004037 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.344176 B = 6933.718671 C = 7698.126124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.124 3.876 4 C -0.210 4.210 5 C 0.051 3.949 6 C -0.205 4.205 7 C -0.074 4.074 8 C -0.173 4.173 9 C 0.120 3.880 10 C -0.453 4.453 11 H 0.081 0.919 12 C 0.075 3.925 13 N -0.783 5.783 14 Si 0.909 3.091 15 H -0.259 1.259 16 H -0.270 1.270 17 H -0.273 1.273 18 C -0.228 4.228 19 C -0.035 4.035 20 C -0.108 4.108 21 C -0.157 4.157 22 C -0.085 4.085 23 C -0.149 4.149 24 C -0.096 4.096 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.282 0.718 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -8.824 0.516 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.079 3.921 4 C -0.229 4.229 5 C 0.051 3.949 6 C -0.206 4.206 7 C -0.093 4.093 8 C -0.192 4.192 9 C 0.117 3.883 10 C -0.481 4.481 11 H 0.099 0.901 12 C -0.144 4.144 13 N -0.407 5.407 14 Si 0.733 3.267 15 H -0.182 1.182 16 H -0.196 1.196 17 H -0.199 1.199 18 C -0.247 4.247 19 C -0.035 4.035 20 C -0.165 4.165 21 C -0.176 4.176 22 C -0.103 4.103 23 C -0.150 4.150 24 C -0.152 4.152 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.320 -9.111 0.452 11.097 hybrid contribution -0.928 0.873 -0.243 1.297 sum 5.393 -8.237 0.210 9.848 Atomic orbital electron populations 1.22991 0.78828 1.03172 1.01715 1.85976 1.20974 1.27394 1.89177 1.18720 0.91650 0.83846 0.97839 1.21397 0.99823 0.91580 1.10107 1.18744 0.92345 0.92237 0.91550 1.17917 1.03156 0.94654 1.04865 1.20417 0.94599 0.97095 0.97173 1.20967 1.01981 0.94984 1.01287 1.17676 0.89890 0.92354 0.88369 1.19681 0.97607 0.96683 1.34156 0.90133 1.25990 0.97545 0.97987 0.92885 1.69829 1.11774 1.27747 1.31392 0.86243 0.79280 0.82114 0.79054 1.18233 1.19553 1.19861 1.20533 1.03277 0.97852 1.03037 1.19073 0.95628 0.93624 0.95188 1.20814 0.96934 1.01214 0.97508 1.21250 0.93453 0.97887 1.04963 1.20696 0.99033 0.91186 0.99344 1.19068 0.90384 0.95782 1.09739 1.20489 0.98411 0.94881 1.01463 0.92671 0.92703 0.88778 0.85769 0.89468 0.86460 0.90678 0.88805 0.92524 0.92990 0.92429 0.86156 0.86237 0.92242 0.92358 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.85 9.52 -19.42 -0.18 -5.04 16 3 C 0.12 2.07 6.65 -39.27 -0.26 1.81 16 4 C -0.21 -3.83 8.49 -39.03 -0.33 -4.16 16 5 C 0.05 1.00 4.70 -104.90 -0.49 0.51 16 6 C -0.20 -4.54 5.50 -104.63 -0.58 -5.12 16 7 C -0.07 -1.74 9.43 -39.66 -0.37 -2.11 16 8 C -0.17 -4.41 8.63 -39.28 -0.34 -4.75 16 9 C 0.12 3.12 5.57 -106.80 -0.60 2.53 16 10 C -0.45 -11.67 9.03 -37.86 -0.34 -12.01 16 11 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 12 C 0.08 1.82 5.13 -17.33 -0.09 1.74 16 13 N -0.78 -19.60 10.96 55.55 0.61 -18.99 16 14 Si 0.91 18.02 29.60 -169.99 -5.03 12.98 16 15 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 C -0.23 -5.49 9.36 -39.28 -0.37 -5.86 16 19 C -0.03 -0.77 5.83 -104.70 -0.61 -1.39 16 20 C -0.11 -1.95 8.44 36.01 0.30 -1.65 16 21 C -0.16 -2.71 7.89 -39.16 -0.31 -3.02 16 22 C -0.08 -1.28 9.68 -39.66 -0.38 -1.66 16 23 C -0.15 -2.30 5.90 -104.36 -0.62 -2.92 16 24 C -0.10 -1.18 9.78 36.01 0.35 -0.83 16 25 H 0.05 0.66 7.66 -51.93 -0.40 0.27 16 26 H 0.05 0.65 7.66 -51.93 -0.40 0.26 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.12 2.22 6.27 -52.49 -0.33 1.90 16 29 H 0.09 1.89 8.03 -52.49 -0.42 1.46 16 30 H 0.12 3.08 6.17 -52.49 -0.32 2.75 16 31 H 0.28 6.37 8.30 -40.81 -0.34 6.03 16 32 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 34 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.06 1.02 6.44 -51.93 -0.33 0.68 16 36 H 0.12 1.99 6.85 -52.49 -0.36 1.63 16 37 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -27.44 330.08 -9.09 -36.53 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.42 Total: 7.09 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: -4.04 Total: -37.55 kcal Atomic # 7 Polarization: -19.60 SS G_CDS: 0.61 Total: -18.99 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.18 Total: -5.04 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.44 -9.09 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241036932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.854 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds