Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35816 * 117.00224 * 2 1 4 4 C 1.38979 * 119.90856 * 359.97438 * 3 2 1 5 5 C 1.37748 * 120.08539 * 180.02562 * 4 3 2 6 6 C 1.50705 * 120.04287 * 179.97438 * 5 4 3 7 7 C 1.39718 * 119.91431 * 359.97438 * 5 4 3 8 8 C 1.47880 * 120.08720 * 179.97438 * 7 5 4 9 9 C 1.39999 * 119.89097 * 310.29415 * 8 7 5 10 10 C 1.36211 * 120.11893 * 180.30287 * 9 8 7 11 11 C 1.40951 * 119.88115 * 359.42942 * 10 9 8 12 12 C 1.40992 * 120.11599 * 180.30145 * 11 10 9 13 13 H 1.08001 * 120.00534 * 204.69676 * 12 11 10 14 14 C 1.39984 * 120.00110 * 24.68924 * 12 11 10 15 15 N 1.30825 * 119.99460 * 17.97514 * 14 12 11 16 16 Si 1.86790 * 120.00290 * 197.97920 * 14 12 11 17 17 H 1.48502 * 109.47126 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47415 * 120.00180 * 16 14 12 19 19 H 1.48506 * 109.47075 * 240.00102 * 16 14 12 20 20 C 1.40953 * 119.77369 * 0.28033 * 11 10 9 21 21 C 1.36215 * 119.88381 * 359.97438 * 20 11 10 22 22 C 1.39678 * 119.82317 * 0.27895 * 7 5 4 23 23 C 1.37797 * 119.90852 * 359.46299 * 22 7 5 24 24 C 1.50697 * 119.95533 * 180.22984 * 23 22 7 25 25 H 1.08995 * 109.46989 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47079 * 300.00971 * 1 2 3 27 27 H 1.09005 * 109.46489 * 60.00519 * 1 2 3 28 28 H 1.07999 * 119.96182 * 359.97438 * 4 3 2 29 29 H 1.08994 * 109.46952 * 270.02252 * 6 5 4 30 30 H 1.08992 * 109.46892 * 30.02616 * 6 5 4 31 31 H 1.08999 * 109.47035 * 150.02287 * 6 5 4 32 32 H 1.07998 * 119.94096 * 0.03568 * 9 8 7 33 33 H 1.07992 * 120.06317 * 179.70620 * 10 9 8 34 34 H 0.97000 * 119.99292 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.05856 * 180.02562 * 20 11 10 36 36 H 1.07996 * 119.94627 * 180.02562 * 21 20 11 37 37 H 1.07997 * 120.04412 * 179.71956 * 22 7 5 38 38 H 1.08999 * 109.47244 * 270.30494 * 24 23 22 39 39 H 1.09003 * 109.46968 * 30.29961 * 24 23 22 40 40 H 1.08998 * 109.47337 * 150.29945 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2869 2.3745 -0.0005 5 6 1.9085 3.6037 -0.0011 6 6 1.0848 4.8658 -0.0022 7 6 3.3036 3.6790 -0.0005 8 6 3.9750 4.9967 -0.0017 9 6 3.5927 5.9737 -0.9287 10 6 4.2121 7.1867 -0.9379 11 6 5.2314 7.4618 -0.0041 12 6 5.8716 8.7181 -0.0051 13 1 6.8701 8.8157 0.3947 14 6 5.2129 9.8388 -0.5243 15 7 3.9142 9.8200 -0.6808 16 14 6.1883 11.3611 -0.9938 17 1 7.6297 11.1287 -0.7222 18 1 5.9969 11.6456 -2.4387 19 1 5.7138 12.5191 -0.1942 20 6 5.6084 6.4769 0.9311 21 6 4.9862 5.2651 0.9286 22 6 4.0626 2.5064 -0.0054 23 6 3.4332 1.2806 0.0006 24 6 4.2510 0.0149 0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.2085 2.3156 -0.0014 29 1 0.8863 5.1691 -1.0301 30 1 0.1410 4.6840 0.5117 31 1 1.6315 5.6569 0.5109 32 1 2.8082 5.7636 -1.6406 33 1 3.9198 7.9380 -1.6565 34 1 3.4578 10.5967 -1.0403 35 1 6.3885 6.6829 1.6490 36 1 5.2739 4.5099 1.6449 37 1 5.1412 2.5605 -0.0095 38 1 4.4486 -0.2902 -1.0270 39 1 5.1956 0.1926 0.5147 40 1 3.7006 -0.7734 0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241135599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = -14.039975 kcal Electronic energy + Delta-G solvation = -21080.494505 eV Core-core repulsion = 18017.234644 eV Total energy + Delta-G solvation = -3063.259860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99406 -38.11449 -36.74471 -33.97973 -33.32246 -30.92228 -29.71077 -28.66289 -28.55395 -27.42669 -25.27493 -24.12090 -22.07885 -21.06097 -20.60629 -19.53208 -17.38338 -17.19749 -16.04776 -15.64200 -15.57021 -15.12993 -14.17690 -13.83994 -13.76622 -13.60035 -13.14217 -13.05647 -12.84151 -12.52666 -12.43054 -12.08655 -12.00532 -11.76809 -11.65422 -11.50720 -11.37796 -11.20368 -10.96666 -10.67356 -10.49386 -10.44716 -10.28016 -9.67377 -9.40327 -9.23363 -8.32254 -7.81094 -7.55860 -7.03785 -6.85117 -4.39590 1.73263 1.75644 2.72702 3.02411 3.07723 3.10702 3.15413 3.47138 3.85822 4.14559 4.57594 5.00951 5.09257 5.14955 5.22248 5.41264 5.43807 5.56890 5.63951 5.70636 5.85891 5.90933 5.99482 6.05949 6.09223 6.17308 6.28171 6.34507 6.45531 6.68583 6.72501 6.81646 6.95206 6.97419 7.13115 7.17558 7.26255 7.36021 7.58264 7.66948 7.90354 7.99844 8.10009 8.22400 8.56353 8.80247 8.91355 10.06581 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035378 B = 0.003642 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.259601 B = 7685.675883 C = 8263.322486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.097 3.903 4 C -0.200 4.200 5 C -0.059 4.059 6 C -0.111 4.111 7 C -0.018 4.018 8 C -0.195 4.195 9 C -0.075 4.075 10 C -0.172 4.172 11 C 0.117 3.883 12 C -0.454 4.454 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.784 5.784 16 Si 0.908 3.092 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.274 1.274 20 C -0.230 4.230 21 C -0.067 4.067 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.099 4.099 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.282 0.718 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -11.498 -0.116 12.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.053 3.947 4 C -0.219 4.219 5 C -0.059 4.059 6 C -0.168 4.168 7 C -0.018 4.018 8 C -0.196 4.196 9 C -0.094 4.094 10 C -0.191 4.191 11 C 0.114 3.886 12 C -0.483 4.483 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.408 5.408 16 Si 0.732 3.268 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.199 1.199 20 C -0.250 4.250 21 C -0.085 4.085 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.156 4.156 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.362 -11.523 -0.181 12.711 hybrid contribution -0.041 0.934 -0.194 0.955 sum -5.402 -10.590 -0.375 11.894 Atomic orbital electron populations 1.22940 0.79331 1.03107 1.01133 1.85973 1.20539 1.27435 1.89498 1.18735 0.91621 0.83660 1.00660 1.20903 0.99091 0.91875 1.10046 1.19821 0.93531 0.94110 0.98472 1.20849 0.98211 0.95674 1.02032 1.18837 0.91500 0.93274 0.98203 1.17960 1.04130 0.93066 1.04483 1.20480 0.98229 0.93468 0.97200 1.20973 1.01021 0.95852 1.01250 1.17686 0.90323 0.92060 0.88499 1.19656 1.01909 0.92363 1.34369 0.90223 1.25975 0.94696 1.00771 0.92942 1.69838 1.08596 1.30773 1.31638 0.86257 0.81136 0.80331 0.79034 1.18288 1.19596 1.19901 1.20652 1.05789 0.95861 1.02669 1.20312 0.95280 0.96045 0.96882 1.21025 0.99547 0.90264 0.99856 1.19075 0.90354 0.95846 1.06928 1.20537 0.98648 0.94685 1.01707 0.88869 0.93036 0.93037 0.86276 0.91553 0.92931 0.89906 0.89335 0.86503 0.90736 0.88958 0.89398 0.85716 0.91977 0.92025 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.50 9.52 -19.16 -0.18 -4.68 16 3 C 0.10 1.56 6.67 -39.05 -0.26 1.29 16 4 C -0.20 -3.18 8.67 -39.49 -0.34 -3.53 16 5 C -0.06 -1.06 5.87 -104.25 -0.61 -1.67 16 6 C -0.11 -1.86 8.44 36.01 0.30 -1.56 16 7 C -0.02 -0.35 5.47 -104.86 -0.57 -0.92 16 8 C -0.20 -4.28 4.75 -104.63 -0.50 -4.78 16 9 C -0.08 -1.73 7.81 -39.65 -0.31 -2.04 16 10 C -0.17 -4.34 8.63 -39.28 -0.34 -4.68 16 11 C 0.12 3.04 5.57 -106.80 -0.60 2.45 16 12 C -0.45 -11.73 9.03 -37.89 -0.34 -12.07 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 14 C 0.08 1.83 5.13 -17.33 -0.09 1.74 16 15 N -0.78 -19.59 10.96 55.55 0.61 -18.98 16 16 Si 0.91 18.09 29.60 -169.99 -5.03 13.06 16 17 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 20 C -0.23 -5.56 9.73 -39.28 -0.38 -5.94 16 21 C -0.07 -1.50 9.44 -39.65 -0.37 -1.87 16 22 C -0.09 -1.57 9.15 -39.21 -0.36 -1.93 16 23 C -0.12 -1.97 5.89 -104.53 -0.62 -2.58 16 24 C -0.10 -1.30 9.78 36.00 0.35 -0.95 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 27 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 28 H 0.12 1.59 6.28 -52.49 -0.33 1.26 16 29 H 0.07 1.06 7.47 -51.93 -0.39 0.67 16 30 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.08 1.59 6.45 -51.93 -0.33 1.25 16 32 H 0.09 1.88 6.79 -52.49 -0.36 1.52 16 33 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 34 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 35 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.09 1.77 8.04 -52.49 -0.42 1.35 16 37 H 0.12 2.09 8.04 -52.49 -0.42 1.67 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.06 0.81 7.52 -51.93 -0.39 0.42 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -27.34 330.00 -9.09 -36.44 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.42 Total: 6.94 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: -4.04 Total: -37.74 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.61 Total: -18.98 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.18 Total: -4.68 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.34 -9.09 -36.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241135599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.397 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds