Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35801 * 116.99871 * 2 1 4 4 C 1.38985 * 119.91159 * 359.97438 * 3 2 1 5 5 C 1.37735 * 120.10036 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.05146 * 180.02562 * 5 4 3 7 7 C 1.39770 * 119.90227 * 0.02562 * 5 4 3 8 8 C 1.47771 * 120.09080 * 179.97438 * 7 5 4 9 9 C 1.39233 * 120.34270 * 245.01897 * 8 7 5 10 10 C 1.38020 * 119.98011 * 179.97438 * 9 8 7 11 11 C 1.38959 * 120.68592 * 359.72378 * 10 9 8 12 12 C 1.36410 * 120.69423 * 0.55862 * 11 10 9 13 13 C 1.40758 * 119.99089 * 359.44864 * 12 11 10 14 14 C 1.40849 * 120.33439 * 180.25341 * 13 12 11 15 15 H 1.07999 * 120.00198 * 204.78062 * 14 13 12 16 16 C 1.40048 * 119.99695 * 24.78255 * 14 13 12 17 17 N 1.30785 * 120.00395 * 17.64246 * 16 14 13 18 18 Si 1.86805 * 119.99723 * 197.63860 * 16 14 13 19 19 H 1.48501 * 109.47238 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47078 * 120.00321 * 18 16 14 21 21 H 1.48494 * 109.47172 * 240.00215 * 18 16 14 22 22 C 1.39716 * 119.81362 * 0.26351 * 7 5 4 23 23 C 1.37776 * 119.90900 * 359.43405 * 22 7 5 24 24 C 1.50701 * 119.95688 * 180.27298 * 23 22 7 25 25 H 1.08993 * 109.46889 * 60.00473 * 1 2 3 26 26 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47112 * 300.00164 * 1 2 3 28 28 H 1.08006 * 119.94995 * 359.97438 * 4 3 2 29 29 H 1.08999 * 109.46927 * 269.97875 * 6 5 4 30 30 H 1.08994 * 109.46904 * 29.97841 * 6 5 4 31 31 H 1.08997 * 109.46841 * 149.98358 * 6 5 4 32 32 H 1.08002 * 120.00699 * 359.97438 * 9 8 7 33 33 H 1.08002 * 119.65990 * 180.02562 * 10 9 8 34 34 H 1.08000 * 119.65396 * 180.30407 * 11 10 9 35 35 H 1.08000 * 120.00165 * 179.71509 * 12 11 10 36 36 H 0.97005 * 120.00226 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.04583 * 179.72417 * 22 7 5 38 38 H 1.09005 * 109.46699 * 270.32130 * 24 23 22 39 39 H 1.09000 * 109.47006 * 30.31786 * 24 23 22 40 40 H 1.09002 * 109.47538 * 150.32464 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2868 2.3745 -0.0005 5 6 1.9080 3.6037 0.0000 6 6 1.0842 4.8657 0.0000 7 6 3.3036 3.6791 0.0005 8 6 3.9745 4.9958 0.0005 9 6 4.7464 5.3919 -1.0884 10 6 5.3692 6.6236 -1.0808 11 6 5.2308 7.4815 0.0036 12 6 4.4859 7.1193 1.0874 13 6 3.8381 5.8698 1.1102 14 6 3.0628 5.4906 2.2233 15 1 2.9030 4.4446 2.4389 16 6 2.4992 6.4702 3.0503 17 7 2.3891 7.7018 2.6241 18 14 1.9044 6.0178 4.7624 19 1 2.1407 4.5715 5.0024 20 1 2.6479 6.8144 5.7713 21 1 0.4524 6.3079 4.8748 22 6 4.0627 2.5062 -0.0050 23 6 3.4333 1.2806 0.0007 24 6 4.2510 0.0147 0.0010 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2083 2.3153 -0.0014 29 1 0.8863 5.1703 -1.0277 30 1 0.1400 4.6831 0.5131 31 1 1.6305 5.6561 0.5145 32 1 4.8577 4.7356 -1.9389 33 1 5.9664 6.9258 -1.9284 34 1 5.7215 8.4435 -0.0101 35 1 4.3896 7.7929 1.9261 36 1 1.9983 8.3802 3.1968 37 1 5.1414 2.5601 -0.0091 38 1 4.4489 -0.2901 -1.0267 39 1 5.1953 0.1922 0.5155 40 1 3.7001 -0.7737 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241135840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -10.026560 kcal Electronic energy + Delta-G solvation = -21949.697220 eV Core-core repulsion = 18886.611395 eV Total energy + Delta-G solvation = -3063.085825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.80762 -38.06702 -36.50364 -33.80964 -33.21181 -30.99962 -29.65726 -28.46642 -28.08721 -27.07687 -25.31601 -23.97816 -22.06951 -20.94722 -20.66300 -19.21267 -17.26720 -16.96778 -15.85656 -15.56858 -15.45813 -14.97243 -14.20873 -13.75925 -13.66320 -13.44058 -13.06610 -12.93463 -12.63328 -12.39772 -12.30285 -12.04523 -11.78124 -11.58854 -11.43592 -11.30302 -11.16600 -11.04725 -10.89141 -10.55231 -10.44464 -10.24997 -10.19085 -9.58355 -9.41843 -9.13806 -8.06477 -7.61309 -7.41649 -7.05623 -6.78498 -4.38730 1.99672 2.02546 2.73682 2.99814 3.04680 3.10903 3.20531 3.63744 3.89008 4.37770 4.58500 5.18311 5.29642 5.29869 5.41454 5.55740 5.64445 5.64743 5.84472 5.94045 5.99132 6.11042 6.17727 6.23308 6.35018 6.40436 6.45745 6.51017 6.63423 6.73749 6.94827 7.01016 7.07453 7.19924 7.25749 7.36001 7.42527 7.55974 7.58321 7.84266 7.93839 8.05826 8.10043 8.23790 8.59014 8.82704 8.92414 10.08619 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.006911 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.947121 B = 4050.520553 C = 5211.537508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.102 3.898 4 C -0.209 4.209 5 C -0.027 4.027 6 C -0.125 4.125 7 C -0.012 4.012 8 C -0.178 4.178 9 C -0.074 4.074 10 C -0.244 4.244 11 C -0.103 4.103 12 C -0.162 4.162 13 C 0.128 3.872 14 C -0.445 4.445 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.788 5.788 18 Si 0.899 3.101 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.274 1.274 22 C -0.086 4.086 23 C -0.130 4.130 24 C -0.096 4.096 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.281 0.719 37 H 0.122 0.878 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -8.357 -2.431 9.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.058 3.942 4 C -0.228 4.228 5 C -0.027 4.027 6 C -0.182 4.182 7 C -0.012 4.012 8 C -0.180 4.180 9 C -0.092 4.092 10 C -0.263 4.263 11 C -0.122 4.122 12 C -0.181 4.181 13 C 0.125 3.875 14 C -0.474 4.474 15 H 0.099 0.901 16 C -0.141 4.141 17 N -0.412 5.412 18 Si 0.724 3.276 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.104 4.104 23 C -0.131 4.131 24 C -0.153 4.153 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.769 -8.315 -2.352 9.074 hybrid contribution -0.678 0.112 0.765 1.028 sum -3.447 -8.203 -1.587 9.038 Atomic orbital electron populations 1.22923 0.79467 1.02908 1.01181 1.85954 1.20452 1.27629 1.89548 1.18742 0.91602 0.83562 1.00307 1.20943 0.99038 0.92008 1.10817 1.19856 0.93531 0.94011 0.95286 1.21068 0.98734 0.97195 1.01156 1.18598 0.91608 0.92735 0.98236 1.18493 1.07608 0.95499 0.96351 1.20542 0.96849 0.95580 0.96243 1.20249 1.09245 0.96829 0.99966 1.20456 0.99300 0.97478 0.94923 1.21049 0.99648 0.98777 0.98608 1.17491 0.89268 0.90428 0.90317 1.19511 1.26315 0.94357 1.07181 0.90112 1.25911 0.94185 0.94389 0.99566 1.69809 1.32431 1.02687 1.36322 0.86380 0.78771 0.80405 0.82080 1.18237 1.19642 1.19922 1.21016 0.99312 0.90408 0.99640 1.18990 0.90295 0.95709 1.08112 1.20504 0.98628 0.94803 1.01381 0.93092 0.89028 0.93007 0.86456 0.92830 0.93416 0.86632 0.89411 0.89600 0.89650 0.86400 0.90785 0.86053 0.92266 0.92178 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.08 9.52 -19.12 -0.18 -5.26 16 3 C 0.10 1.83 6.67 -39.04 -0.26 1.57 16 4 C -0.21 -3.84 8.67 -39.49 -0.34 -4.18 16 5 C -0.03 -0.55 5.32 -104.23 -0.55 -1.10 16 6 C -0.13 -2.57 9.27 36.01 0.33 -2.24 16 7 C -0.01 -0.25 4.38 -104.88 -0.46 -0.71 16 8 C -0.18 -4.18 4.66 -104.23 -0.49 -4.66 16 9 C -0.07 -1.65 9.73 -39.29 -0.38 -2.03 16 10 C -0.24 -5.39 10.03 -39.39 -0.40 -5.78 16 11 C -0.10 -2.37 9.96 -39.97 -0.40 -2.77 16 12 C -0.16 -4.04 8.64 -39.29 -0.34 -4.38 16 13 C 0.13 3.21 4.53 -106.55 -0.48 2.72 16 14 C -0.44 -11.11 6.17 -37.92 -0.23 -11.34 16 15 H 0.08 2.07 7.08 -52.49 -0.37 1.70 16 16 C 0.08 1.86 5.14 -17.32 -0.09 1.77 16 17 N -0.79 -19.16 10.96 55.55 0.61 -18.55 16 18 Si 0.90 18.30 29.60 -169.99 -5.03 13.27 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.09 -1.68 9.38 -39.20 -0.37 -2.05 16 23 C -0.13 -2.35 5.89 -104.53 -0.62 -2.97 16 24 C -0.10 -1.41 9.78 36.01 0.35 -1.06 16 25 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 28 H 0.12 1.87 6.28 -52.48 -0.33 1.54 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.12 2.75 4.33 -51.93 -0.23 2.52 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.12 3.03 6.17 -52.49 -0.32 2.71 16 36 H 0.28 6.25 8.30 -40.82 -0.34 5.92 16 37 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.06 0.89 7.52 -51.93 -0.39 0.50 16 LS Contribution 327.23 15.07 4.93 4.93 Total: -1.00 -26.56 327.23 -8.77 -35.33 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.37 Total: 8.14 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: -3.73 Total: -37.86 kcal Atomic # 7 Polarization: -19.16 SS G_CDS: 0.61 Total: -18.55 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.18 Total: -5.26 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.56 -8.77 -35.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241135840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.304 kcal (2) G-P(sol) polarization free energy of solvation -26.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds