Wall clock time and date at job start Tue Mar 31 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35601 * 117.00294 * 2 1 4 4 C 1.39150 * 119.88521 * 0.27234 * 3 2 1 5 5 C 1.36405 * 120.43905 * 180.27881 * 4 3 2 6 6 C 1.40904 * 120.19311 * 359.72546 * 5 4 3 7 7 C 1.41246 * 120.12514 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99363 * 24.58112 * 7 6 5 9 9 C 1.39861 * 119.99928 * 204.57932 * 7 6 5 10 10 N 1.30890 * 120.00213 * 17.95974 * 9 7 6 11 11 Si 1.86801 * 119.99826 * 197.95308 * 9 7 6 12 12 H 1.48507 * 109.46919 * 60.00302 * 11 9 7 13 13 H 1.48495 * 109.47315 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47210 * 300.00729 * 11 9 7 15 15 C 1.40620 * 119.75705 * 359.97438 * 6 5 4 16 16 C 1.38586 * 119.57231 * 359.97438 * 15 6 5 17 17 C 1.48344 * 120.09838 * 180.02562 * 16 15 6 18 18 C 1.39380 * 120.12168 * 65.00131 * 17 16 15 19 19 C 1.37986 * 119.87537 * 179.97438 * 18 17 16 20 20 C 1.50702 * 119.93917 * 180.02562 * 19 18 17 21 21 C 1.38343 * 120.12670 * 0.02562 * 19 18 17 22 22 C 1.38307 * 120.24360 * 0.24970 * 21 19 18 23 23 C 1.38027 * 120.12733 * 359.49236 * 22 21 19 24 24 C 1.50707 * 120.06611 * 180.27472 * 23 22 21 25 25 H 1.08996 * 109.47320 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47353 * 300.00509 * 1 2 3 27 27 H 1.09000 * 109.46492 * 60.00457 * 1 2 3 28 28 H 1.08005 * 119.77626 * 359.97438 * 4 3 2 29 29 H 1.08008 * 119.90444 * 179.69696 * 5 4 3 30 30 H 0.97004 * 119.99983 * 180.02562 * 10 9 7 31 31 H 1.08009 * 120.21371 * 180.02562 * 15 6 5 32 32 H 1.08003 * 120.06292 * 0.02562 * 18 17 16 33 33 H 1.09000 * 109.47187 * 269.98478 * 20 19 18 34 34 H 1.09005 * 109.47000 * 29.97985 * 20 19 18 35 35 H 1.08996 * 109.47156 * 149.98139 * 20 19 18 36 36 H 1.08000 * 119.87889 * 179.97438 * 21 19 18 37 37 H 1.08005 * 119.93296 * 179.72594 * 22 21 19 38 38 H 1.08992 * 109.46951 * 270.23327 * 24 23 22 39 39 H 1.08999 * 109.46650 * 30.23291 * 24 23 22 40 40 H 1.08998 * 109.46683 * 150.22909 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2846 2.3737 0.0057 5 6 1.8921 3.5950 0.0001 6 6 3.2981 3.6870 -0.0058 7 6 3.9257 4.9524 -0.0111 8 1 3.4051 5.8148 0.3782 9 6 5.2211 5.0883 -0.5205 10 7 5.7192 4.1609 -1.2984 11 14 6.2405 6.5936 -0.0908 12 1 6.4246 6.6629 1.3812 13 1 7.5666 6.4986 -0.7521 14 1 5.5402 7.8161 -0.5601 15 6 4.0743 2.5144 -0.0053 16 6 3.4468 1.2788 0.0015 17 6 4.2542 0.0344 0.0027 18 6 5.0666 -0.2713 1.0932 19 6 5.8151 -1.4304 1.0892 20 6 6.6936 -1.7626 2.2678 21 6 5.7607 -2.2884 0.0053 22 6 4.9606 -1.9873 -1.0819 23 6 4.2035 -0.8332 -1.0865 24 6 3.3275 -0.5096 -2.2693 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.2064 2.3109 0.0097 29 1 1.2936 4.4941 -0.0004 30 1 6.6179 4.2551 -1.6513 31 1 5.1526 2.5764 -0.0094 32 1 5.1096 0.3976 1.9402 33 1 7.6854 -1.3378 2.1129 34 1 6.2573 -1.3451 3.1753 35 1 6.7735 -2.8450 2.3678 36 1 6.3486 -3.1944 0.0062 37 1 4.9253 -2.6585 -1.9274 38 1 3.8959 0.0738 -2.9936 39 1 2.9883 -1.4353 -2.7342 40 1 2.4646 0.0667 -1.9354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241191817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:03 Heat of formation + Delta-G solvation = -9.278475 kcal Electronic energy + Delta-G solvation = -21849.915602 eV Core-core repulsion = 18786.862216 eV Total energy + Delta-G solvation = -3063.053386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.44729 -38.23074 -36.31106 -33.68923 -33.14853 -31.56630 -29.14411 -28.76559 -28.33321 -26.79621 -24.66135 -24.33932 -22.60162 -20.81297 -20.63458 -19.36000 -17.15821 -16.82222 -15.44261 -15.37528 -15.09322 -14.83397 -14.59706 -14.38568 -13.56071 -13.42985 -13.08837 -12.78443 -12.55918 -12.53396 -12.24087 -12.20514 -12.04987 -11.57529 -11.37626 -11.30336 -11.06396 -10.91506 -10.80440 -10.67864 -10.54370 -10.48488 -9.96083 -9.86023 -9.39412 -9.03368 -8.27556 -7.90621 -7.40519 -7.00085 -6.71936 -4.27047 1.88676 1.96532 2.75748 2.86797 3.08047 3.09919 3.19887 3.94665 4.29628 4.33587 4.57354 5.26305 5.29552 5.47954 5.55966 5.59006 5.64008 5.68502 5.71250 5.84662 5.86448 5.94478 6.04494 6.06736 6.11859 6.24920 6.33278 6.42993 6.54131 6.67754 6.86875 6.93688 6.97780 7.06404 7.12115 7.15537 7.30483 7.39746 7.50542 7.61985 7.75712 7.95549 8.16716 8.43135 8.61063 8.87852 8.93962 10.21358 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.006641 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.236114 B = 4215.241749 C = 5518.267049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.010 3.990 4 C -0.169 4.169 5 C -0.191 4.191 6 C 0.087 3.913 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.796 5.796 11 Si 0.905 3.095 12 H -0.264 1.264 13 H -0.279 1.279 14 H -0.266 1.266 15 C -0.114 4.114 16 C -0.063 4.063 17 C 0.003 3.997 18 C -0.108 4.108 19 C -0.101 4.101 20 C -0.108 4.108 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.068 4.068 24 C -0.113 4.113 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.281 0.719 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 -8.636 1.733 8.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.237 6.237 3 C -0.033 4.033 4 C -0.188 4.188 5 C -0.211 4.211 6 C 0.085 3.915 7 C -0.494 4.494 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.422 5.422 11 Si 0.730 3.270 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.191 1.191 15 C -0.133 4.133 16 C -0.064 4.064 17 C 0.003 3.997 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.164 4.164 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.068 4.068 24 C -0.170 4.170 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.896 -8.868 1.581 9.052 hybrid contribution 0.221 0.918 0.041 0.945 sum -0.675 -7.950 1.623 8.142 Atomic orbital electron populations 1.22711 0.81306 1.01686 1.00239 1.85918 1.18725 1.28247 1.90788 1.18444 0.90680 0.83010 1.11187 1.20349 0.97383 0.92869 1.08205 1.20603 0.94805 0.95113 1.10536 1.17495 0.90560 0.93292 0.90171 1.19397 0.98666 0.94912 1.36403 0.90544 1.25851 0.97969 0.97664 0.92653 1.69822 1.16498 1.33524 1.22319 0.86413 0.78836 0.81834 0.79917 1.18886 1.20380 1.19101 1.21294 0.99926 0.89107 1.03016 1.17845 0.88842 0.92213 1.07459 1.18711 0.94797 0.93431 0.92746 1.21079 0.96861 0.96373 0.98305 1.19692 0.98805 0.95375 0.96254 1.20713 0.98667 1.01171 0.95889 1.20808 1.00665 0.99501 0.94165 1.20818 0.98049 0.97176 0.98219 1.19897 0.97178 0.93947 0.95737 1.20825 0.99779 1.01080 0.95305 0.90102 0.94031 0.93978 0.88490 0.88683 0.90825 0.85384 0.86426 0.91708 0.91913 0.92196 0.87091 0.86893 0.91849 0.92969 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.32 -6.46 8.37 -18.50 -0.15 -6.61 16 3 C 0.01 0.23 5.31 -38.44 -0.20 0.03 16 4 C -0.17 -3.73 8.95 -39.90 -0.36 -4.09 16 5 C -0.19 -4.57 9.72 -39.23 -0.38 -4.96 16 6 C 0.09 2.28 5.57 -106.85 -0.60 1.68 16 7 C -0.46 -12.11 9.04 -37.83 -0.34 -12.45 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 9 C 0.08 1.89 5.13 -17.35 -0.09 1.80 16 10 N -0.80 -20.49 10.96 55.54 0.61 -19.88 16 11 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 12 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 15 C -0.11 -2.92 8.36 -38.55 -0.32 -3.25 16 16 C -0.06 -1.48 4.63 -104.80 -0.49 -1.96 16 17 C 0.00 0.07 4.94 -104.90 -0.52 -0.45 16 18 C -0.11 -2.12 9.38 -39.25 -0.37 -2.48 16 19 C -0.10 -1.70 5.87 -104.67 -0.61 -2.31 16 20 C -0.11 -1.40 10.01 36.01 0.36 -1.04 16 21 C -0.13 -2.13 9.69 -39.52 -0.38 -2.51 16 22 C -0.12 -2.11 9.69 -39.63 -0.38 -2.50 16 23 C -0.07 -1.32 5.68 -104.28 -0.59 -1.91 16 24 C -0.11 -2.09 9.44 36.01 0.34 -1.75 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.61 7.63 -51.93 -0.40 0.21 16 27 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.10 1.85 6.26 -52.48 -0.33 1.52 16 29 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 30 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 31 H 0.13 3.44 6.16 -52.48 -0.32 3.12 16 32 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.08 1.69 4.64 -51.93 -0.24 1.45 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -27.95 330.94 -8.99 -36.94 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.46 Total: 7.57 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: -3.95 Total: -36.61 kcal Atomic # 7 Polarization: -20.49 SS G_CDS: 0.61 Total: -19.88 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.15 Total: -6.61 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.95 -8.99 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241191817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.659 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds