Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47341 * 2 1 4 4 C 1.38342 * 119.94184 * 270.02776 * 3 2 1 5 5 C 1.38303 * 120.24673 * 179.97438 * 4 3 2 6 6 C 1.38032 * 120.12422 * 359.73835 * 5 4 3 7 7 C 1.39338 * 119.87414 * 0.51328 * 6 5 4 8 8 C 1.48368 * 120.12012 * 179.76841 * 7 6 5 9 9 C 1.39929 * 119.91624 * 179.73998 * 8 7 6 10 10 C 1.38032 * 120.47227 * 180.02562 * 9 8 7 11 11 C 1.38520 * 120.30705 * 359.97438 * 10 9 8 12 12 O 1.35600 * 120.08812 * 179.97438 * 11 10 9 13 13 C 1.42906 * 116.99493 * 0.02562 * 12 11 10 14 14 C 1.41381 * 119.83171 * 359.72627 * 11 10 9 15 15 C 1.41178 * 120.23218 * 180.27469 * 14 11 10 16 16 H 1.07992 * 120.00258 * 24.97412 * 15 14 11 17 17 C 1.39917 * 119.99747 * 204.97442 * 15 14 11 18 18 N 1.30876 * 119.99979 * 17.75734 * 17 15 14 19 19 Si 1.86802 * 119.99678 * 197.75307 * 17 15 14 20 20 H 1.48504 * 109.46995 * 90.00213 * 19 17 15 21 21 H 1.48498 * 109.46991 * 209.99841 * 19 17 15 22 22 H 1.48496 * 109.47347 * 330.00119 * 19 17 15 23 23 C 1.38618 * 119.92144 * 359.71996 * 8 7 6 24 24 C 1.38000 * 119.93606 * 89.99947 * 3 2 1 25 25 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46665 * 299.99690 * 1 2 3 27 27 H 1.09002 * 109.47240 * 59.99597 * 1 2 3 28 28 H 1.09000 * 109.46665 * 240.00310 * 2 1 3 29 29 H 1.09002 * 109.47240 * 120.00403 * 2 1 3 30 30 H 1.08004 * 119.87726 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.93912 * 180.02562 * 5 4 3 32 32 H 1.07995 * 120.06569 * 180.27358 * 6 5 4 33 33 H 1.08000 * 119.76882 * 0.02562 * 9 8 7 34 34 H 1.08000 * 119.85261 * 179.97438 * 10 9 8 35 35 H 1.08997 * 109.47013 * 299.99482 * 13 12 11 36 36 H 1.09002 * 109.47432 * 59.99411 * 13 12 11 37 37 H 1.09001 * 109.46655 * 179.97438 * 13 12 11 38 38 H 0.97003 * 119.99459 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.15732 * 359.97438 * 23 8 7 40 40 H 1.08000 * 120.06318 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0720 -1.1988 5 6 2.7226 3.3760 -1.2061 6 6 2.9505 4.0369 -0.0160 7 6 2.7260 3.3842 1.1944 8 6 2.9741 4.0877 2.4769 9 6 2.7420 3.4299 3.6900 10 6 2.9685 4.0737 4.8898 11 6 3.4293 5.3799 4.9062 12 8 3.6498 6.0081 6.0875 13 6 3.3862 5.2626 7.2778 14 6 3.6742 6.0546 3.6882 15 6 4.1495 7.3840 3.6951 16 1 4.6994 7.7564 4.5466 17 6 3.9079 8.2189 2.5986 18 7 2.9722 7.9125 1.7365 19 14 4.9211 9.7708 2.3654 20 1 6.1217 9.4601 1.5485 21 1 4.1023 10.7969 1.6714 22 1 5.3449 10.2892 3.6909 23 6 3.4357 5.3948 2.4706 24 6 2.2620 2.0700 1.1959 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0810 1.5601 -2.1324 31 1 2.8998 3.8798 -2.1449 32 1 3.3060 5.0567 -0.0228 33 1 2.3831 2.4113 3.6875 34 1 2.7856 3.5566 5.8202 35 1 2.3378 4.9652 7.2956 36 1 4.0164 4.3735 7.2968 37 1 3.6038 5.8805 8.1491 38 1 2.8045 8.4916 0.9765 39 1 3.6155 5.9021 1.5343 40 1 2.0816 1.5611 2.1312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241546324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = -10.442242 kcal Electronic energy + Delta-G solvation = -21170.821108 eV Core-core repulsion = 18107.717258 eV Total energy + Delta-G solvation = -3063.103851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.21878 -38.42795 -36.16620 -34.04712 -33.54400 -31.17813 -29.85462 -29.21928 -27.59820 -26.44503 -25.20651 -23.61192 -22.42336 -21.36439 -20.35164 -19.23644 -17.50134 -16.58316 -16.04106 -15.45212 -15.02015 -14.77732 -14.67109 -14.39162 -13.79938 -13.36711 -13.24894 -13.14048 -12.93330 -12.70632 -12.25992 -12.06070 -11.70821 -11.56603 -11.46368 -11.22398 -11.15499 -11.06383 -10.86276 -10.59899 -10.53166 -10.30820 -10.09763 -9.81347 -9.38028 -9.19690 -8.45162 -8.24588 -7.53018 -6.83691 -6.57290 -4.26512 1.60690 1.89553 2.75891 3.00917 3.09954 3.14483 3.21553 3.96588 4.28243 4.47458 4.72562 4.98301 5.07345 5.40134 5.45285 5.46899 5.58775 5.66895 5.69084 5.74354 5.81063 5.87294 5.90162 5.95581 6.05433 6.08259 6.14623 6.24932 6.27124 6.51292 6.55708 6.82311 6.93311 6.98348 7.02926 7.13965 7.28691 7.39361 7.51802 7.64037 7.72197 7.98878 8.16635 8.35463 8.66808 8.82396 9.02597 10.20650 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.005282 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.841098 B = 5299.277890 C = 6923.240930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.088 4.088 4 C -0.141 4.141 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.002 4.002 8 C -0.074 4.074 9 C -0.190 4.190 10 C -0.181 4.181 11 C 0.021 3.979 12 O -0.311 6.311 13 C 0.034 3.966 14 C 0.093 3.907 15 C -0.446 4.446 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.798 5.798 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.124 4.124 24 C -0.123 4.123 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.280 0.720 39 H 0.133 0.867 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 -8.949 -2.449 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.159 4.159 5 C -0.136 4.136 6 C -0.138 4.138 7 C -0.002 4.002 8 C -0.075 4.075 9 C -0.210 4.210 10 C -0.200 4.200 11 C -0.023 4.023 12 O -0.225 6.225 13 C -0.062 4.062 14 C 0.090 3.910 15 C -0.476 4.476 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.424 5.424 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.143 4.143 24 C -0.141 4.141 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.770 -8.650 -2.623 9.211 hybrid contribution 0.190 0.476 0.012 0.512 sum -1.580 -8.175 -2.611 8.726 Atomic orbital electron populations 1.21746 0.95109 1.01123 1.02337 1.20483 0.95922 0.93195 1.02220 1.19697 1.00042 0.95814 0.93253 1.20834 1.02912 0.95335 0.96842 1.20991 1.00058 0.94765 0.97739 1.21399 1.00349 1.00437 0.91598 1.19069 0.95139 0.92762 0.93250 1.18440 1.03984 0.94632 0.90403 1.20173 1.10677 0.98739 0.91372 1.20547 1.07478 0.94618 0.97310 1.19357 1.05471 0.92318 0.85188 1.85962 1.83876 1.40677 1.12005 1.22748 0.99622 0.96632 0.87189 1.16984 0.92833 0.93422 0.87740 1.19417 1.30530 0.95387 1.02229 0.89881 1.25883 0.93802 0.99739 0.94887 1.69836 1.23919 1.37269 1.11359 0.86299 0.80334 0.80532 0.79532 1.19299 1.20374 1.18579 1.21280 1.02963 0.91790 0.98282 1.21078 1.01192 0.94655 0.97149 0.92858 0.92456 0.92684 0.91555 0.91394 0.87137 0.86723 0.85343 0.88733 0.88383 0.94092 0.94182 0.89986 0.90880 0.84993 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.90 37.16 0.37 -1.23 16 2 C -0.08 -0.97 6.06 -27.88 -0.17 -1.14 16 3 C -0.09 -1.36 5.13 -104.67 -0.54 -1.89 16 4 C -0.14 -2.13 9.69 -39.52 -0.38 -2.51 16 5 C -0.12 -1.92 10.03 -39.63 -0.40 -2.32 16 6 C -0.12 -2.33 9.42 -39.25 -0.37 -2.70 16 7 C 0.00 -0.04 5.88 -104.90 -0.62 -0.66 16 8 C -0.07 -1.73 5.87 -104.95 -0.62 -2.35 16 9 C -0.19 -4.22 9.42 -39.02 -0.37 -4.58 16 10 C -0.18 -4.04 9.01 -39.55 -0.36 -4.40 16 11 C 0.02 0.53 6.72 -38.28 -0.26 0.27 16 12 O -0.31 -7.20 9.77 -18.50 -0.18 -7.38 16 13 C 0.03 0.58 9.81 101.05 0.99 1.57 16 14 C 0.09 2.49 5.58 -106.72 -0.60 1.90 16 15 C -0.45 -11.99 8.71 -37.84 -0.33 -12.32 16 16 H 0.08 2.23 7.65 -52.49 -0.40 1.83 16 17 C 0.07 1.85 5.14 -17.33 -0.09 1.76 16 18 N -0.80 -20.38 10.96 55.55 0.61 -19.77 16 19 Si 0.91 18.85 29.60 -169.99 -5.03 13.82 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.12 -3.17 8.06 -38.58 -0.31 -3.48 16 24 C -0.12 -2.19 9.07 -39.25 -0.36 -2.55 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.13 2.60 6.19 -52.49 -0.32 2.28 16 33 H 0.09 1.84 6.17 -52.49 -0.32 1.52 16 34 H 0.10 1.90 6.27 -52.49 -0.33 1.57 16 35 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 36 H 0.04 0.62 7.66 -51.93 -0.40 0.23 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 39 H 0.13 3.41 4.29 -52.49 -0.23 3.19 16 40 H 0.12 2.00 6.18 -52.49 -0.32 1.67 16 LS Contribution 330.36 15.07 4.98 4.98 Total: -1.00 -28.40 330.36 -9.25 -37.65 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.23 Total: 7.34 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: -4.39 Total: -36.63 kcal Atomic # 7 Polarization: -20.38 SS G_CDS: 0.61 Total: -19.77 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.18 Total: -7.38 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.40 -9.25 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241546324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.211 kcal (2) G-P(sol) polarization free energy of solvation -28.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds