Wall clock time and date at job start Tue Mar 31 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46740 * 2 1 4 4 C 1.38350 * 119.93326 * 270.23132 * 3 2 1 5 5 C 1.38306 * 120.24874 * 180.28237 * 4 3 2 6 6 C 1.38031 * 120.11894 * 359.48590 * 5 4 3 7 7 C 1.39348 * 119.87959 * 0.25762 * 6 5 4 8 8 C 1.48331 * 120.12553 * 180.02562 * 7 6 5 9 9 C 1.38598 * 120.09554 * 129.71950 * 8 7 6 10 10 C 1.40614 * 119.56976 * 179.79416 * 9 8 7 11 11 C 1.41243 * 120.11842 * 180.23145 * 10 9 8 12 12 H 1.07995 * 120.00248 * 330.37373 * 11 10 9 13 13 C 1.39866 * 120.00133 * 150.37792 * 11 10 9 14 14 N 1.30893 * 120.00587 * 161.71217 * 13 11 10 15 15 Si 1.86804 * 119.99714 * 341.71083 * 13 11 10 16 16 H 1.48501 * 109.46885 * 95.42081 * 15 13 11 17 17 H 1.48503 * 109.47173 * 215.41606 * 15 13 11 18 18 H 1.48496 * 109.47397 * 335.42120 * 15 13 11 19 19 C 1.40911 * 119.76474 * 0.48334 * 10 9 8 20 20 C 1.36413 * 120.18566 * 359.74853 * 19 10 9 21 21 C 1.39152 * 120.43784 * 0.02562 * 20 19 10 22 22 O 1.35601 * 119.88292 * 179.97438 * 21 20 19 23 23 C 1.42902 * 117.00422 * 0.02562 * 22 21 20 24 24 C 1.37983 * 119.93871 * 89.99974 * 3 2 1 25 25 H 1.09008 * 109.47131 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47080 * 300.00092 * 1 2 3 27 27 H 1.09000 * 109.47446 * 60.00508 * 1 2 3 28 28 H 1.09001 * 109.47080 * 239.99907 * 2 1 3 29 29 H 1.09000 * 109.47446 * 119.99492 * 2 1 3 30 30 H 1.08004 * 119.87970 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.93964 * 179.76629 * 5 4 3 32 32 H 1.08000 * 120.06405 * 180.28101 * 6 5 4 33 33 H 1.08002 * 120.21286 * 0.02562 * 9 8 7 34 34 H 0.96996 * 120.00479 * 180.02562 * 14 13 11 35 35 H 1.07995 * 119.91176 * 179.72513 * 19 10 9 36 36 H 1.08001 * 119.78440 * 179.97438 * 20 19 10 37 37 H 1.08999 * 109.47472 * 179.97438 * 23 22 21 38 38 H 1.09003 * 109.46732 * 300.00740 * 23 22 21 39 39 H 1.08997 * 109.46731 * 59.99718 * 23 22 21 40 40 H 1.08002 * 120.06478 * 359.95584 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2578 2.0734 -1.1989 5 6 2.7242 3.3754 -1.2066 6 6 2.9573 4.0347 -0.0165 7 6 2.7268 3.3842 1.1941 8 6 2.9749 4.0877 2.4762 9 6 2.0006 4.1002 3.4619 10 6 2.2491 4.7667 4.6748 11 6 1.2663 4.7826 5.6891 12 1 0.2195 4.7371 5.4275 13 6 1.6488 4.8574 7.0324 14 7 0.7818 5.2283 7.9402 15 14 3.3971 4.4278 7.5310 16 1 4.2090 5.6689 7.6077 17 1 3.3839 3.7622 8.8584 18 1 3.9882 3.5111 6.5233 19 6 3.4801 5.4233 4.8728 20 6 4.4303 5.4088 3.8941 21 6 4.1948 4.7477 2.6925 22 8 5.1470 4.7409 1.7272 23 6 6.3653 5.4312 2.0126 24 6 2.2618 2.0702 1.1957 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.0728 1.5628 -2.1325 31 1 2.9021 3.8787 -2.1454 32 1 3.3172 5.0529 -0.0235 33 1 1.0581 3.5980 3.3009 34 1 1.0471 5.2805 8.8717 35 1 3.6718 5.9397 5.8017 36 1 5.3714 5.9145 4.0525 37 1 7.0387 5.3477 1.1596 38 1 6.1506 6.4825 2.2051 39 1 6.8357 4.9898 2.8911 40 1 2.0811 1.5613 2.1311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241546345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:45 Heat of formation + Delta-G solvation = -10.537816 kcal Electronic energy + Delta-G solvation = -21336.567561 eV Core-core repulsion = 18273.459566 eV Total energy + Delta-G solvation = -3063.107995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.51943 -38.46974 -36.55535 -34.16754 -33.33279 -31.79150 -29.87363 -29.28456 -28.31853 -27.01899 -24.49150 -23.68603 -22.90569 -21.19808 -20.51582 -19.80478 -17.37105 -17.24631 -16.01980 -15.60685 -15.16058 -14.97273 -14.85882 -14.63738 -13.85394 -13.53411 -13.31894 -13.19637 -12.93677 -12.85719 -12.69700 -12.45508 -12.05036 -11.77049 -11.50495 -11.32922 -11.22896 -11.13595 -10.95247 -10.68381 -10.56611 -10.35553 -10.08724 -9.95105 -9.57742 -9.12703 -8.59389 -8.33717 -7.67610 -7.11598 -6.93456 -4.41169 1.59518 1.79915 2.50980 2.60794 3.07544 3.18659 3.29282 3.96395 4.10263 4.19069 4.45819 4.94284 5.03239 5.29306 5.30954 5.39046 5.46039 5.50620 5.54836 5.58203 5.65120 5.74230 5.84099 5.86253 5.88982 5.99759 6.02323 6.18516 6.25994 6.41270 6.45922 6.57182 6.70673 6.79701 6.87789 6.93222 7.07867 7.11005 7.33243 7.41839 7.50442 7.73941 7.87607 8.25324 8.36403 8.63296 8.79494 10.09756 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.005543 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.372086 B = 5050.271969 C = 6327.444055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.089 4.089 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.100 4.100 7 C -0.007 4.007 8 C -0.047 4.047 9 C -0.160 4.160 10 C 0.071 3.929 11 C -0.449 4.449 12 H 0.091 0.909 13 C 0.084 3.916 14 N -0.812 5.812 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.290 1.290 18 H -0.245 1.245 19 C -0.199 4.199 20 C -0.154 4.154 21 C 0.012 3.988 22 O -0.322 6.322 23 C 0.035 3.965 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.284 0.716 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -4.976 -12.125 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.151 4.151 5 C -0.141 4.141 6 C -0.118 4.118 7 C -0.007 4.007 8 C -0.048 4.048 9 C -0.180 4.180 10 C 0.068 3.932 11 C -0.478 4.478 12 H 0.109 0.891 13 C -0.133 4.133 14 N -0.437 5.437 15 Si 0.733 3.267 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.168 1.168 19 C -0.219 4.219 20 C -0.173 4.173 21 C -0.032 4.032 22 O -0.237 6.237 23 C -0.061 4.061 24 C -0.127 4.127 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.975 -5.016 -12.043 13.963 hybrid contribution 0.942 0.213 0.727 1.209 sum 5.917 -4.803 -11.317 13.643 Atomic orbital electron populations 1.21751 0.94956 1.01298 1.02371 1.20498 0.96045 0.93012 1.02366 1.19721 1.00025 0.95985 0.93128 1.20875 1.02026 0.95211 0.96949 1.20964 1.00585 0.94953 0.97632 1.21168 0.99234 0.99937 0.91437 1.18835 0.96174 0.93042 0.92683 1.17820 0.92725 1.00781 0.93467 1.20976 0.98406 1.04152 0.94419 1.17627 0.91995 0.90454 0.93112 1.19342 0.95384 1.43580 0.89483 0.89134 1.26085 0.99439 0.91323 0.96501 1.69721 1.37204 1.33482 1.03297 0.86394 0.82346 0.80124 0.77848 1.19799 1.21743 1.16830 1.20692 0.96475 1.05640 0.99054 1.20439 0.99578 1.02990 0.94301 1.18458 0.89958 1.05354 0.89444 1.85887 1.24496 1.72738 1.40535 1.22764 0.85892 0.96163 1.01252 1.21139 0.99919 0.94190 0.97454 0.92760 0.92264 0.92743 0.91531 0.91201 0.86981 0.86723 0.86230 0.87086 0.90569 0.87851 0.87901 0.89778 0.93754 0.93870 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.08 -0.96 6.06 -27.88 -0.17 -1.13 16 3 C -0.09 -1.30 5.13 -104.67 -0.54 -1.84 16 4 C -0.13 -1.84 9.69 -39.52 -0.38 -2.23 16 5 C -0.12 -1.80 10.03 -39.63 -0.40 -2.20 16 6 C -0.10 -1.72 8.78 -39.24 -0.34 -2.06 16 7 C -0.01 -0.14 5.27 -104.90 -0.55 -0.69 16 8 C -0.05 -1.02 5.48 -104.81 -0.57 -1.60 16 9 C -0.16 -3.71 9.25 -38.55 -0.36 -4.06 16 10 C 0.07 1.78 5.10 -106.85 -0.54 1.23 16 11 C -0.45 -12.02 9.55 -37.83 -0.36 -12.38 16 12 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 13 C 0.08 2.20 5.40 -17.34 -0.09 2.11 16 14 N -0.81 -21.60 13.93 55.54 0.77 -20.83 16 15 Si 0.91 20.64 24.51 -169.99 -4.17 16.47 16 16 H -0.27 -5.99 6.70 56.52 0.38 -5.61 16 17 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.25 -5.73 6.87 56.52 0.39 -5.34 16 19 C -0.20 -4.75 7.10 -39.23 -0.28 -5.03 16 20 C -0.15 -3.33 8.95 -39.90 -0.36 -3.69 16 21 C 0.01 0.25 6.63 -38.44 -0.25 -0.01 16 22 O -0.32 -6.09 8.81 -18.50 -0.16 -6.25 16 23 C 0.04 0.51 9.80 101.05 0.99 1.50 16 24 C -0.11 -1.89 9.16 -39.25 -0.36 -2.25 16 25 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.12 2.05 7.68 -52.49 -0.40 1.65 16 33 H 0.11 2.45 8.04 -52.49 -0.42 2.03 16 34 H 0.28 6.85 8.30 -40.82 -0.34 6.52 16 35 H 0.10 2.45 4.72 -52.49 -0.25 2.20 16 36 H 0.10 1.93 6.26 -52.49 -0.33 1.60 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.60 7.64 -51.93 -0.40 0.21 16 39 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 40 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -28.07 330.45 -8.37 -36.44 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.59 Total: 4.73 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: -4.21 Total: -35.54 kcal Atomic # 7 Polarization: -21.60 SS G_CDS: 0.77 Total: -20.83 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.16 Total: -6.25 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.17 Total: 16.47 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.07 -8.37 -36.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241546345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.905 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds