Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38356 * 119.86966 * 2 1 4 4 C 1.37978 * 120.12451 * 179.69923 * 3 2 1 5 5 C 1.50707 * 120.06514 * 180.27491 * 4 3 2 6 6 C 1.39408 * 119.87434 * 0.54763 * 4 3 2 7 7 C 1.48285 * 120.12874 * 179.72284 * 6 4 3 8 8 C 1.39291 * 120.15937 * 244.72845 * 7 6 4 9 9 C 1.38017 * 119.94479 * 179.97438 * 8 7 6 10 10 C 1.38447 * 120.26806 * 359.97438 * 9 8 7 11 11 C 1.38115 * 120.32752 * 0.02562 * 10 9 8 12 12 C 1.38758 * 120.04469 * 0.02562 * 11 10 9 13 13 O 1.35667 * 120.13089 * 180.02562 * 12 11 10 14 14 C 1.34815 * 117.00169 * 354.39929 * 13 12 11 15 15 H 1.08001 * 119.99875 * 5.06453 * 14 13 12 16 16 C 1.38644 * 120.00115 * 185.06522 * 14 13 12 17 17 N 1.31558 * 120.00173 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00006 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47190 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46861 * 120.00082 * 18 16 14 21 21 H 1.48492 * 109.47083 * 239.99878 * 18 16 14 22 22 C 1.39379 * 119.74815 * 359.45179 * 6 4 3 23 23 C 1.38024 * 119.86785 * 0.27445 * 22 6 4 24 24 C 1.50699 * 119.93462 * 179.97438 * 23 22 6 25 25 H 1.08996 * 109.47426 * 270.01897 * 1 2 3 26 26 H 1.09001 * 109.47199 * 30.03140 * 1 2 3 27 27 H 1.09007 * 109.46704 * 150.02601 * 1 2 3 28 28 H 1.08000 * 119.93556 * 359.97255 * 3 2 1 29 29 H 1.08995 * 109.47022 * 270.27605 * 5 4 3 30 30 H 1.09000 * 109.46734 * 30.27506 * 5 4 3 31 31 H 1.09001 * 109.47352 * 150.27140 * 5 4 3 32 32 H 1.07995 * 120.03104 * 0.02562 * 8 7 6 33 33 H 1.07995 * 119.86703 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.83376 * 179.74332 * 10 9 8 35 35 H 1.07992 * 119.97680 * 179.97438 * 11 10 9 36 36 H 0.96993 * 120.00216 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.06563 * 180.25238 * 22 6 4 38 38 H 1.08998 * 109.47200 * 90.00498 * 24 23 22 39 39 H 1.09008 * 109.47394 * 209.99745 * 24 23 22 40 40 H 1.08996 * 109.47526 * 330.00192 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1998 0.0000 4 6 3.5758 1.2059 0.0063 5 6 4.3250 2.5136 0.0125 6 6 4.2756 0.0002 0.0010 7 6 5.7585 0.0003 0.0015 8 6 6.4587 -0.5089 -1.0896 9 6 7.8388 -0.5062 -1.0847 10 6 8.5318 0.0015 0.0010 11 6 7.8488 0.5091 1.0888 12 6 6.4613 0.5120 1.0984 13 8 5.7886 1.0107 2.1658 14 6 6.5234 1.3817 3.2335 15 1 7.6019 1.3527 3.1831 16 6 5.8947 1.8005 4.3961 17 7 4.5811 1.8363 4.4572 18 14 6.9129 2.3139 5.8756 19 1 8.3564 2.1832 5.5526 20 1 6.6081 3.7258 6.2204 21 1 6.5836 1.4403 7.0303 22 6 3.5762 -1.2054 0.0011 23 6 2.1960 -1.1993 0.0006 24 6 1.4382 -2.5019 0.0001 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6529 2.1332 -0.0004 29 1 4.5060 2.8335 -1.0136 30 1 3.7332 3.2688 0.5296 31 1 5.2776 2.3841 0.5262 32 1 5.9221 -0.9048 -1.9392 33 1 8.3804 -0.9017 -1.9312 34 1 9.6118 -0.0037 -0.0008 35 1 8.3951 0.9034 1.9329 36 1 4.1412 2.1289 5.2707 37 1 4.1131 -2.1424 0.0012 38 1 1.2550 -2.8161 1.0276 39 1 0.4863 -2.3684 -0.5141 40 1 2.0249 -3.2634 -0.5136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241633381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = 6.731086 kcal Electronic energy + Delta-G solvation = -21871.905568 eV Core-core repulsion = 18809.546409 eV Total energy + Delta-G solvation = -3062.359159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.66405 -38.46101 -36.32720 -33.98263 -32.28364 -32.09788 -29.92941 -28.86172 -28.67577 -26.21079 -25.33161 -24.26911 -22.14421 -21.28619 -21.05035 -19.04095 -17.94310 -16.86749 -15.53201 -15.35120 -14.61322 -14.53945 -14.36208 -13.94553 -13.87844 -13.71051 -13.42562 -12.71363 -12.61392 -12.52956 -12.46009 -12.34242 -12.16700 -11.70103 -11.65195 -11.36502 -11.26215 -10.98138 -10.84855 -10.83920 -10.62048 -10.44041 -10.33994 -10.21669 -9.32505 -8.84081 -8.29495 -7.98158 -7.62730 -7.11855 -6.44055 -4.03030 1.77575 2.02346 2.27572 2.38942 3.11491 3.13409 3.18292 3.95490 4.27338 4.56790 5.07054 5.19939 5.25165 5.28910 5.35666 5.44833 5.57431 5.66056 5.74792 5.76394 5.82806 5.96501 5.97343 6.07343 6.11115 6.12046 6.18325 6.28764 6.33650 6.35871 6.63044 6.67838 6.70670 6.79347 6.98856 7.04035 7.10455 7.16472 7.23647 7.33673 7.37012 7.46674 7.68080 7.81793 7.98995 9.00560 9.70450 10.72369 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.006822 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.267166 B = 4103.277786 C = 5460.408640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.051 4.051 5 C -0.113 4.113 6 C -0.012 4.012 7 C -0.129 4.129 8 C -0.062 4.062 9 C -0.215 4.215 10 C -0.072 4.072 11 C -0.236 4.236 12 C 0.164 3.836 13 O -0.160 6.160 14 C -0.396 4.396 15 H 0.091 0.909 16 C 0.043 3.957 17 N -0.853 5.853 18 Si 0.937 3.063 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.104 4.104 23 C -0.102 4.102 24 C -0.110 4.110 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.268 0.732 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 -3.464 -8.431 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.136 4.136 4 C -0.051 4.051 5 C -0.169 4.169 6 C -0.012 4.012 7 C -0.130 4.130 8 C -0.080 4.080 9 C -0.234 4.234 10 C -0.090 4.090 11 C -0.255 4.255 12 C 0.109 3.891 13 O -0.063 6.063 14 C -0.472 4.472 15 H 0.109 0.891 16 C -0.162 4.162 17 N -0.487 5.487 18 Si 0.762 3.238 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.122 4.122 23 C -0.102 4.102 24 C -0.166 4.166 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.348 -3.349 -8.194 9.464 hybrid contribution 0.716 0.276 0.943 1.216 sum -2.631 -3.073 -7.251 8.303 Atomic orbital electron populations 1.20785 0.92084 1.01937 1.01906 1.19581 0.95266 0.92707 1.01992 1.20702 0.93487 0.96965 1.02434 1.19863 0.93077 0.94918 0.97225 1.20814 1.01849 0.93695 1.00570 1.18419 0.91630 0.92294 0.98824 1.17825 0.91192 1.08720 0.95274 1.20684 0.93737 0.97582 0.96034 1.20507 0.93859 1.09300 0.99756 1.20794 0.98482 0.96530 0.93210 1.21120 0.93957 1.09540 1.00925 1.19294 0.90276 0.90971 0.88535 1.84036 1.34493 1.67420 1.20348 1.21376 0.91115 1.45024 0.89684 0.89135 1.25246 0.96066 0.96895 0.98013 1.70069 1.07570 1.43072 1.27962 0.85711 0.79309 0.78460 0.80345 1.19133 1.20173 1.20202 1.20958 0.92988 0.97163 1.01138 1.19470 0.93486 0.94424 1.02807 1.20771 0.99559 0.94416 1.01882 0.91593 0.92202 0.91733 0.86771 0.92596 0.92194 0.89791 0.87066 0.87586 0.87559 0.85451 0.92154 0.86680 0.91666 0.91733 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.60 36.01 0.35 -1.10 16 2 C -0.10 -1.63 5.88 -104.55 -0.62 -2.24 16 3 C -0.12 -2.20 9.34 -39.63 -0.37 -2.57 16 4 C -0.05 -1.06 5.69 -104.28 -0.59 -1.65 16 5 C -0.11 -2.29 9.44 36.01 0.34 -1.95 16 6 C -0.01 -0.25 4.95 -104.90 -0.52 -0.76 16 7 C -0.13 -2.77 4.64 -104.73 -0.49 -3.25 16 8 C -0.06 -1.15 9.73 -39.27 -0.38 -1.54 16 9 C -0.22 -3.77 10.03 -39.59 -0.40 -4.16 16 10 C -0.07 -1.32 10.03 -39.55 -0.40 -1.72 16 11 C -0.24 -5.12 9.16 -39.43 -0.36 -5.48 16 12 C 0.16 3.92 5.25 -38.74 -0.20 3.71 16 13 O -0.16 -4.42 7.66 0.35 0.00 -4.42 16 14 C -0.40 -10.84 9.49 30.88 0.29 -10.55 16 15 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 16 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 17 N -0.85 -24.64 13.67 55.48 0.76 -23.89 16 18 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.10 -2.00 9.39 -39.24 -0.37 -2.37 16 23 C -0.10 -1.75 5.87 -104.67 -0.61 -2.37 16 24 C -0.11 -1.45 9.60 36.01 0.35 -1.11 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.06 0.72 5.93 -51.92 -0.31 0.41 16 28 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 31 H 0.08 1.94 4.65 -51.93 -0.24 1.70 16 32 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.73 5.93 -51.92 -0.31 0.42 16 40 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -30.23 330.41 -8.57 -38.80 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.20 Total: 7.17 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -4.08 Total: -38.03 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.76 Total: -23.89 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: 0.00 Total: -4.42 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.23 -8.57 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241633381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.527 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds