Wall clock time and date at job start Tue Mar 31 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35907 * 116.99634 * 2 1 4 4 C 1.38832 * 119.99875 * 0.02562 * 3 2 1 5 5 C 1.38206 * 120.19332 * 179.97438 * 4 3 2 6 6 C 1.38067 * 120.17572 * 359.75817 * 5 4 3 7 7 C 1.50697 * 120.00579 * 180.25717 * 6 5 4 8 8 C 1.39343 * 119.99113 * 0.49958 * 6 5 4 9 9 C 1.48400 * 120.09429 * 179.76381 * 8 6 5 10 10 C 1.39327 * 120.12220 * 129.72260 * 9 8 6 11 11 C 1.38022 * 119.87992 * 179.97438 * 10 9 8 12 12 C 1.38316 * 120.11626 * 0.26040 * 11 10 9 13 13 C 1.50703 * 119.87553 * 179.74265 * 12 11 10 14 14 C 1.50703 * 109.47225 * 89.99606 * 13 12 11 15 15 H 1.08008 * 119.99852 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00129 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00045 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99829 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46682 * 90.00043 * 18 16 14 20 20 H 1.48500 * 109.47075 * 209.99355 * 18 16 14 21 21 H 1.48493 * 109.47330 * 329.99819 * 18 16 14 22 22 C 1.38320 * 120.24640 * 359.47918 * 12 11 10 23 23 C 1.38022 * 120.11943 * 0.52114 * 22 12 11 24 24 C 1.38501 * 119.99692 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47175 * 299.99720 * 1 2 3 26 26 H 1.09000 * 109.47548 * 59.99928 * 1 2 3 27 27 H 1.09001 * 109.46567 * 180.02562 * 1 2 3 28 28 H 1.08006 * 119.90077 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.91204 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47777 * 270.23997 * 7 6 5 31 31 H 1.09003 * 109.46837 * 30.23407 * 7 6 5 32 32 H 1.08996 * 109.47515 * 150.23499 * 7 6 5 33 33 H 1.07999 * 120.06133 * 359.97438 * 10 9 8 34 34 H 1.08002 * 119.93878 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.46875 * 209.99604 * 13 12 11 36 36 H 1.08995 * 109.47270 * 329.99342 * 13 12 11 37 37 H 0.96998 * 120.00266 * 180.02562 * 17 16 14 38 38 H 1.07996 * 119.94206 * 180.23737 * 22 12 11 39 39 H 1.08003 * 120.06214 * 179.76394 * 23 22 12 40 40 H 1.08001 * 120.08882 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2897 2.3753 0.0005 5 6 1.9129 3.6088 0.0011 6 6 3.2911 3.6901 0.0061 7 6 3.9666 5.0372 0.0125 8 6 4.0575 2.5264 0.0002 9 6 5.5391 2.6111 0.0003 10 6 6.2813 1.8775 0.9234 11 6 7.6591 1.9596 0.9187 12 6 8.3027 2.7725 0.0032 13 6 9.8071 2.8625 0.0067 14 6 10.3756 1.8082 -0.9078 15 1 9.7137 1.1400 -1.4388 16 6 11.7406 1.6972 -1.0674 17 7 12.2367 0.7768 -1.8651 18 14 12.8853 2.8534 -0.1496 19 1 13.2405 2.2586 1.1639 20 1 14.1198 3.0643 -0.9476 21 1 12.2056 4.1562 0.0644 22 6 7.5711 3.4988 -0.9190 23 6 6.1929 3.4242 -0.9232 24 6 3.4290 1.2835 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 0.2112 2.3168 0.0005 29 1 1.3201 4.5116 0.0019 30 1 4.1293 5.3671 -1.0135 31 1 3.3340 5.7584 0.5300 32 1 4.9251 4.9606 0.5258 33 1 5.7795 1.2457 1.6413 34 1 8.2353 1.3917 1.6341 35 1 10.1128 3.8490 -0.3419 36 1 10.1782 2.7039 1.0191 37 1 13.1970 0.6985 -1.9772 38 1 8.0789 4.1290 -1.6340 39 1 5.6224 3.9947 -1.6412 40 1 4.0187 0.3786 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241673555.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:34 Heat of formation + Delta-G solvation = -2.975239 kcal Electronic energy + Delta-G solvation = -20646.224768 eV Core-core repulsion = 17583.444711 eV Total energy + Delta-G solvation = -3062.780057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35435 -38.94193 -37.43951 -33.71460 -32.29750 -32.11569 -30.32977 -30.26414 -28.26794 -26.92420 -25.98233 -23.52941 -22.36844 -21.68831 -20.98179 -19.98581 -18.07651 -16.78371 -16.38568 -15.88632 -15.69044 -15.27810 -14.76722 -14.65386 -14.15366 -14.07487 -13.67560 -13.52845 -13.12081 -12.86641 -12.56569 -12.37519 -12.25963 -12.16154 -11.93750 -11.67977 -11.45678 -11.32458 -11.01017 -10.80702 -10.66848 -10.28139 -10.07361 -9.95305 -9.40411 -9.00565 -8.59622 -8.36591 -8.14780 -7.61827 -6.08382 -4.07863 1.06683 1.38558 1.98857 2.08298 3.14224 3.27793 3.35709 3.38136 3.69055 4.38923 4.40340 4.66163 4.71930 4.87558 4.90997 4.95157 5.14522 5.22030 5.22988 5.26988 5.38793 5.47868 5.52687 5.67228 5.72601 5.83327 5.91858 6.01321 6.10156 6.17299 6.21854 6.30605 6.49258 6.53021 6.64092 6.74510 6.92747 6.99774 7.02910 7.06562 7.30751 7.55872 7.56610 7.69658 8.48132 8.97044 9.51532 11.04550 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029553 B = 0.003347 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.227987 B = 8362.975774 C = 8962.478760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.120 3.880 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.113 4.113 7 C -0.112 4.112 8 C 0.012 3.988 9 C -0.086 4.086 10 C -0.101 4.101 11 C -0.123 4.123 12 C -0.020 4.020 13 C 0.012 3.988 14 C -0.514 4.514 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.124 4.124 23 C -0.099 4.099 24 C -0.139 4.139 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.029 0.971 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.828 5.306 5.066 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.075 3.925 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.113 4.113 7 C -0.168 4.168 8 C 0.012 3.988 9 C -0.086 4.086 10 C -0.119 4.119 11 C -0.141 4.141 12 C -0.020 4.020 13 C -0.025 4.025 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.142 4.142 23 C -0.117 4.117 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.574 5.038 4.993 23.662 hybrid contribution 0.374 0.462 0.318 0.674 sum -22.200 5.500 5.311 23.479 Atomic orbital electron populations 1.23016 0.78712 1.03739 1.01166 1.86084 1.21103 1.27054 1.88960 1.18884 0.92130 0.84054 0.97389 1.21164 0.99664 0.92360 1.09907 1.20696 0.93748 0.96836 0.98729 1.19874 0.93096 0.95158 1.03182 1.20836 1.00985 0.92791 1.02202 1.18517 0.92253 0.91510 0.96522 1.18432 0.90288 1.00923 0.98959 1.21069 0.93922 0.98623 0.98331 1.21004 0.93521 0.99497 1.00090 1.20380 0.97589 0.92022 0.91982 1.18850 0.87607 0.98274 0.97779 1.20923 0.92216 1.15941 1.26057 0.90783 1.25003 0.98083 0.95228 0.94937 1.69899 1.12786 1.33606 1.37485 0.86802 0.80513 0.82112 0.80073 1.20150 1.21248 1.18912 1.20998 0.93024 1.00925 0.99218 1.21077 0.94369 0.98331 0.97956 1.20504 0.91132 0.98190 1.05909 0.92822 0.92789 0.88397 0.85797 0.85916 0.91360 0.92177 0.90713 0.86723 0.86097 0.95329 0.95775 0.92574 0.86090 0.86634 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.83 10.49 -19.45 -0.20 -4.03 16 3 C 0.12 1.54 6.68 -39.26 -0.26 1.28 16 4 C -0.21 -2.33 9.03 -39.37 -0.36 -2.68 16 5 C -0.08 -0.90 9.68 -39.66 -0.38 -1.28 16 6 C -0.11 -1.42 5.87 -104.28 -0.61 -2.03 16 7 C -0.11 -1.22 8.45 36.00 0.30 -0.92 16 8 C 0.01 0.18 5.47 -104.92 -0.57 -0.40 16 9 C -0.09 -1.38 4.71 -104.90 -0.49 -1.88 16 10 C -0.10 -1.69 9.51 -39.26 -0.37 -2.07 16 11 C -0.12 -2.32 9.68 -39.63 -0.38 -2.71 16 12 C -0.02 -0.41 5.07 -104.56 -0.53 -0.94 16 13 C 0.01 0.28 4.16 -29.03 -0.12 0.16 16 14 C -0.51 -14.52 9.65 -34.44 -0.33 -14.85 16 15 H 0.07 2.30 7.98 -52.48 -0.42 1.88 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 18 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 22 C -0.12 -2.31 9.68 -39.63 -0.38 -2.69 16 23 C -0.10 -1.62 7.91 -39.25 -0.31 -1.93 16 24 C -0.14 -1.98 9.45 -39.10 -0.37 -2.35 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 26 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.12 1.03 6.28 -52.48 -0.33 0.70 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.07 0.69 7.51 -51.93 -0.39 0.30 16 31 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.07 0.92 6.46 -51.93 -0.34 0.58 16 33 H 0.11 1.68 8.04 -52.49 -0.42 1.26 16 34 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 36 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.12 1.63 6.88 -52.48 -0.36 1.27 16 40 H 0.13 1.90 8.04 -52.49 -0.42 1.47 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -31.51 332.85 -8.89 -40.39 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.51 Total: 0.99 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -4.29 Total: -32.18 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.77 Total: -26.77 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.20 Total: -4.03 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.51 -8.89 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241673555.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.415 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds