Wall clock time and date at job start Tue Mar 31 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99773 * 2 1 4 4 C 1.38902 * 119.99087 * 0.02631 * 3 2 1 5 5 C 1.38265 * 120.24132 * 179.97438 * 4 3 2 6 6 C 1.37995 * 120.20360 * 359.76325 * 5 4 3 7 7 C 1.50702 * 120.01927 * 180.25694 * 6 5 4 8 8 C 1.39602 * 119.95961 * 0.50974 * 6 5 4 9 9 C 1.47996 * 120.11607 * 179.74080 * 8 6 5 10 10 C 1.39952 * 119.88458 * 309.73199 * 9 8 6 11 11 C 1.36230 * 120.12214 * 179.97438 * 10 9 8 12 12 C 1.40942 * 119.87806 * 359.97255 * 11 10 9 13 13 C 1.41030 * 120.11557 * 179.72244 * 12 11 10 14 14 H 1.08008 * 119.99915 * 153.61263 * 13 12 11 15 15 C 1.40007 * 120.00403 * 333.61440 * 13 12 11 16 16 N 1.30798 * 119.99935 * 343.92425 * 15 13 12 17 17 Si 1.86803 * 120.00091 * 163.92314 * 15 13 12 18 18 H 1.48494 * 109.47074 * 90.00168 * 17 15 13 19 19 H 1.48505 * 109.47228 * 209.99889 * 17 15 13 20 20 H 1.48497 * 109.47102 * 329.99807 * 17 15 13 21 21 C 1.40917 * 119.76728 * 0.02562 * 12 11 10 22 22 C 1.50697 * 120.06261 * 179.97438 * 21 12 11 23 23 C 1.36270 * 119.87092 * 0.02643 * 21 12 11 24 24 C 1.38420 * 119.98423 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47477 * 299.99920 * 1 2 3 26 26 H 1.09000 * 109.46835 * 59.99828 * 1 2 3 27 27 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.87783 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.90337 * 180.02562 * 5 4 3 30 30 H 1.08998 * 109.46557 * 270.25545 * 7 6 5 31 31 H 1.09002 * 109.47288 * 30.25377 * 7 6 5 32 32 H 1.08995 * 109.47094 * 150.25873 * 7 6 5 33 33 H 1.08001 * 119.93307 * 359.97343 * 10 9 8 34 34 H 1.08001 * 120.05614 * 179.97438 * 11 10 9 35 35 H 0.96993 * 120.00067 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.46964 * 90.00052 * 22 21 12 37 37 H 1.09000 * 109.47173 * 210.00520 * 22 21 12 38 38 H 1.09002 * 109.46909 * 330.00038 * 22 21 12 39 39 H 1.08000 * 119.93163 * 180.02562 * 23 21 12 40 40 H 1.08004 * 120.09950 * 0.05640 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2892 2.3757 0.0006 5 6 1.9115 3.6104 0.0011 6 6 3.2889 3.6936 0.0060 7 6 3.9628 5.0415 0.0124 8 6 4.0577 2.5283 -0.0003 9 6 5.5352 2.6136 -0.0008 10 6 6.1861 3.4327 -0.9304 11 6 7.5459 3.5152 -0.9349 12 6 8.2974 2.7741 -0.0007 13 6 9.7055 2.8512 -0.0047 14 1 10.2592 2.6636 0.9035 15 6 10.3859 3.1710 -1.1858 16 7 9.7706 3.0906 -2.3372 17 14 12.1724 3.7125 -1.1174 18 1 13.0546 2.5229 -1.2246 19 1 12.4522 4.6394 -2.2434 20 1 12.4305 4.4058 0.1702 21 6 7.6369 1.9509 0.9330 22 6 8.4338 1.1552 1.9344 23 6 6.2764 1.8750 0.9280 24 6 3.4283 1.2830 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2108 2.3166 0.0006 29 1 1.3177 4.5125 0.0019 30 1 4.1246 5.3716 -1.0137 31 1 3.3295 5.7619 0.5303 32 1 4.9216 4.9659 0.5252 33 1 5.6092 4.0004 -1.6454 34 1 8.0471 4.1473 -1.6529 35 1 10.2418 3.3124 -3.1555 36 1 8.5805 1.7492 2.8364 37 1 7.8944 0.2417 2.1846 38 1 9.4031 0.8992 1.5064 39 1 5.7692 1.2447 1.6435 40 1 4.0179 0.3781 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241674239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:37 Heat of formation + Delta-G solvation = -13.219412 kcal Electronic energy + Delta-G solvation = -21163.301743 eV Core-core repulsion = 18100.077466 eV Total energy + Delta-G solvation = -3063.224278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84220 -38.23508 -36.93603 -33.86060 -32.22987 -31.55037 -30.58883 -28.99840 -27.65521 -26.18189 -25.47431 -24.81150 -22.30875 -20.96711 -20.36351 -19.37412 -17.48068 -17.17848 -15.95689 -15.57275 -15.39410 -14.92711 -14.37505 -13.96372 -13.86190 -13.60051 -13.12892 -13.07010 -12.73610 -12.54337 -12.19445 -12.03704 -11.77728 -11.57466 -11.49071 -11.30019 -11.18005 -11.14582 -10.99634 -10.67956 -10.60626 -10.34593 -10.26380 -9.56824 -9.38431 -9.21335 -8.47010 -7.70929 -7.40438 -7.12285 -6.83409 -4.40404 1.65960 1.85617 2.73421 3.02021 3.05443 3.06971 3.15362 3.49825 3.85558 4.18731 4.57788 5.00909 5.15278 5.20667 5.23652 5.44194 5.51244 5.56861 5.70886 5.77758 6.02192 6.12302 6.15347 6.23397 6.30876 6.41331 6.41849 6.62786 6.66004 6.67128 6.72822 6.79150 6.93780 7.00647 7.15503 7.21801 7.23265 7.40368 7.61897 7.71872 7.88141 8.00421 8.07370 8.23194 8.55071 8.80021 8.91030 10.07574 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.003962 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.956649 B = 7065.134636 C = 7493.374593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.118 3.882 4 C -0.231 4.231 5 C -0.083 4.083 6 C -0.127 4.127 7 C -0.105 4.105 8 C 0.051 3.949 9 C -0.199 4.199 10 C -0.074 4.074 11 C -0.169 4.169 12 C 0.123 3.877 13 C -0.450 4.450 14 H 0.082 0.918 15 C 0.075 3.925 16 N -0.784 5.784 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.202 4.202 22 C -0.085 4.085 23 C -0.061 4.061 24 C -0.155 4.155 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.282 0.718 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 -0.039 2.568 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.074 3.926 4 C -0.250 4.250 5 C -0.101 4.101 6 C -0.127 4.127 7 C -0.161 4.161 8 C 0.051 3.949 9 C -0.200 4.200 10 C -0.093 4.093 11 C -0.188 4.188 12 C 0.120 3.880 13 C -0.479 4.479 14 H 0.100 0.900 15 C -0.144 4.144 16 N -0.408 5.408 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.203 4.203 22 C -0.142 4.142 23 C -0.079 4.079 24 C -0.174 4.174 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.858 -0.207 2.306 11.102 hybrid contribution 0.374 0.285 -0.212 0.516 sum -10.484 0.078 2.095 10.691 Atomic orbital electron populations 1.22944 0.79282 1.03227 1.01003 1.86055 1.20669 1.27577 1.89279 1.18911 0.92223 0.83672 0.97830 1.21001 0.99052 0.92441 1.12494 1.20625 0.93926 0.96425 0.99118 1.19958 0.92810 0.95499 1.04417 1.20755 1.01030 0.92644 1.01717 1.18695 0.93372 0.90550 0.92265 1.17937 0.88860 1.09037 1.04179 1.20441 0.94642 0.97429 0.96785 1.20956 0.92089 1.02889 1.02840 1.17550 0.93171 0.87711 0.89538 1.19636 0.91918 1.40312 0.95998 0.89993 1.25985 1.00888 0.92662 0.94881 1.69812 1.38666 1.33536 0.98824 0.86316 0.81807 0.79449 0.79264 1.19390 1.20018 1.18338 1.19433 0.92886 1.04179 1.03806 1.20403 0.99712 0.97212 0.96840 1.20189 0.93259 0.97469 0.96983 1.20586 0.90631 0.98462 1.07681 0.93045 0.93039 0.88797 0.86473 0.86624 0.91963 0.93029 0.90408 0.89225 0.86483 0.90656 0.94058 0.94331 0.92046 0.89281 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.93 10.49 -19.42 -0.20 -5.14 16 3 C 0.12 1.99 6.68 -39.27 -0.26 1.73 16 4 C -0.23 -3.46 9.04 -39.33 -0.36 -3.82 16 5 C -0.08 -1.27 9.68 -39.66 -0.38 -1.65 16 6 C -0.13 -2.23 5.88 -104.20 -0.61 -2.84 16 7 C -0.10 -1.69 8.45 36.01 0.30 -1.38 16 8 C 0.05 1.02 5.47 -104.90 -0.57 0.44 16 9 C -0.20 -4.39 4.74 -104.63 -0.50 -4.89 16 10 C -0.07 -1.71 7.83 -39.66 -0.31 -2.02 16 11 C -0.17 -4.23 8.61 -39.28 -0.34 -4.57 16 12 C 0.12 3.15 5.56 -106.80 -0.59 2.55 16 13 C -0.45 -11.36 8.09 -37.86 -0.31 -11.66 16 14 H 0.08 1.98 6.88 -52.48 -0.36 1.62 16 15 C 0.07 1.80 5.16 -17.33 -0.09 1.71 16 16 N -0.78 -19.57 10.97 55.55 0.61 -18.96 16 17 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.20 -4.78 5.90 -104.32 -0.62 -5.39 16 22 C -0.08 -1.74 9.40 36.00 0.34 -1.40 16 23 C -0.06 -1.37 9.07 -39.66 -0.36 -1.73 16 24 C -0.15 -2.93 9.44 -39.03 -0.37 -3.30 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.12 1.41 6.28 -52.48 -0.33 1.08 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.06 0.96 7.49 -51.93 -0.39 0.57 16 31 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.08 1.40 6.46 -51.93 -0.34 1.06 16 33 H 0.09 1.90 6.85 -52.49 -0.36 1.54 16 34 H 0.12 3.03 6.23 -52.49 -0.33 2.70 16 35 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.06 1.27 6.77 -51.93 -0.35 0.92 16 39 H 0.09 1.85 8.03 -52.49 -0.42 1.43 16 40 H 0.13 2.41 8.04 -52.48 -0.42 1.98 16 LS Contribution 328.32 15.07 4.95 4.95 Total: -1.00 -27.19 328.32 -9.04 -36.23 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.33 Total: 6.92 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: -4.03 Total: -36.91 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.20 Total: -5.14 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.19 -9.04 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241674239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.013 kcal (2) G-P(sol) polarization free energy of solvation -27.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds