Wall clock time and date at job start Tue Mar 31 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35904 * 117.00490 * 2 1 4 4 C 1.38907 * 119.98096 * 0.02728 * 3 2 1 5 5 C 1.38269 * 120.23526 * 179.97438 * 4 3 2 6 6 C 1.37994 * 120.20557 * 359.76032 * 5 4 3 7 7 C 1.50696 * 120.02323 * 180.25636 * 6 5 4 8 8 C 1.39617 * 119.95866 * 0.48917 * 6 5 4 9 9 C 1.47989 * 120.11484 * 179.76397 * 8 6 5 10 10 C 1.39959 * 119.88217 * 244.73189 * 9 8 6 11 11 C 1.36240 * 120.12197 * 179.97438 * 10 9 8 12 12 C 1.40951 * 119.87530 * 0.25328 * 11 10 9 13 13 C 1.41028 * 120.11305 * 179.74798 * 12 11 10 14 14 H 1.08000 * 120.00459 * 24.57546 * 13 12 11 15 15 C 1.40017 * 119.99535 * 204.56814 * 13 12 11 16 16 N 1.30796 * 120.00074 * 17.81232 * 15 13 12 17 17 Si 1.86799 * 119.99878 * 197.80917 * 15 13 12 18 18 H 1.48498 * 109.47200 * 60.00108 * 17 15 13 19 19 H 1.48495 * 109.47265 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47133 * 300.00118 * 17 15 13 21 21 C 1.40916 * 119.76274 * 359.48862 * 12 11 10 22 22 C 1.36267 * 119.87724 * 0.51318 * 21 12 11 23 23 C 1.50705 * 119.93824 * 179.72251 * 22 21 12 24 24 C 1.38420 * 119.98806 * 179.97438 * 3 2 1 25 25 H 1.09008 * 109.46759 * 300.00017 * 1 2 3 26 26 H 1.09001 * 109.46838 * 59.99508 * 1 2 3 27 27 H 1.08992 * 109.47374 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.88308 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.89993 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.46996 * 270.23652 * 7 6 5 31 31 H 1.09000 * 109.46939 * 30.23631 * 7 6 5 32 32 H 1.08995 * 109.47144 * 150.23190 * 7 6 5 33 33 H 1.07999 * 119.93757 * 359.95165 * 10 9 8 34 34 H 1.07993 * 120.05860 * 179.97438 * 11 10 9 35 35 H 0.96993 * 119.99812 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.05820 * 180.27884 * 21 12 11 37 37 H 1.08993 * 109.46966 * 270.02219 * 23 22 21 38 38 H 1.09006 * 109.46596 * 30.01897 * 23 22 21 39 39 H 1.09000 * 109.47089 * 150.01436 * 23 22 21 40 40 H 1.08004 * 120.09732 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2892 2.3757 0.0006 5 6 1.9116 3.6104 0.0011 6 6 3.2890 3.6935 0.0061 7 6 3.9630 5.0413 0.0125 8 6 4.0579 2.5282 0.0002 9 6 5.5353 2.6133 0.0003 10 6 6.2610 2.1417 -1.0996 11 6 7.6212 2.2182 -1.1050 12 6 8.2978 2.7687 0.0021 13 6 9.7060 2.8455 0.0041 14 1 10.2469 2.8700 -0.9303 15 6 10.4029 2.8900 1.2177 16 7 9.8137 2.5168 2.3243 17 14 12.1741 3.4823 1.2565 18 1 12.2405 4.8778 0.7533 19 1 12.6818 3.4338 2.6511 20 1 13.0082 2.6055 0.3958 21 6 7.5619 3.2471 1.1045 22 6 6.2017 3.1657 1.0995 23 6 5.4136 3.6712 2.2805 24 6 3.4284 1.2829 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2109 2.3167 0.0006 29 1 1.3178 4.5125 0.0020 30 1 4.1252 5.3713 -1.0136 31 1 3.3296 5.7618 0.5300 32 1 4.9215 4.9658 0.5257 33 1 5.7417 1.7159 -1.9455 34 1 8.1801 1.8535 -1.9541 35 1 10.2964 2.5481 3.1650 36 1 8.0752 3.6740 1.9534 37 1 5.2780 2.8633 2.9994 38 1 5.9537 4.4915 2.7533 39 1 4.4393 4.0245 1.9427 40 1 4.0179 0.3779 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241680385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:43 Heat of formation + Delta-G solvation = -6.173564 kcal Electronic energy + Delta-G solvation = -21401.306797 eV Core-core repulsion = 18338.388050 eV Total energy + Delta-G solvation = -3062.918747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.92703 -38.36647 -36.80540 -33.97177 -32.27683 -31.38495 -30.83912 -28.97403 -27.65754 -26.00327 -25.56446 -24.87682 -22.30280 -20.98219 -20.32351 -19.44414 -17.55088 -17.09653 -16.00854 -15.58761 -15.28718 -14.98296 -14.45507 -14.21039 -13.74839 -13.69120 -13.26272 -13.17074 -12.71275 -12.48047 -12.24241 -11.98019 -11.78132 -11.62312 -11.51266 -11.25650 -11.15358 -11.06248 -10.89066 -10.66812 -10.61329 -10.35045 -10.27615 -9.60640 -9.45256 -9.15407 -8.40853 -7.71051 -7.38492 -7.19062 -6.81719 -4.39227 1.70159 1.82887 2.71549 3.03070 3.05147 3.08075 3.16130 3.48862 3.87812 4.15098 4.54515 4.99221 5.14021 5.18446 5.21916 5.43090 5.49378 5.59152 5.67269 5.77537 6.00196 6.07412 6.12577 6.16431 6.18799 6.36179 6.42638 6.47066 6.62002 6.65266 6.74484 6.78452 6.88297 7.00956 7.18128 7.18584 7.29282 7.35396 7.60780 7.69687 7.89281 8.01698 8.10937 8.25494 8.57731 8.82832 8.93705 10.10069 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029973 B = 0.004010 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.962336 B = 6980.642818 C = 7252.209828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.227 4.227 5 C -0.086 4.086 6 C -0.119 4.119 7 C -0.118 4.118 8 C 0.054 3.946 9 C -0.200 4.200 10 C -0.063 4.063 11 C -0.232 4.232 12 C 0.119 3.881 13 C -0.457 4.457 14 H 0.079 0.921 15 C 0.076 3.924 16 N -0.784 5.784 17 Si 0.908 3.092 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.167 4.167 22 C -0.045 4.045 23 C -0.118 4.118 24 C -0.150 4.150 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.283 0.717 36 H 0.119 0.881 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.436 1.199 -1.118 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.245 4.245 5 C -0.105 4.105 6 C -0.119 4.119 7 C -0.174 4.174 8 C 0.054 3.946 9 C -0.202 4.202 10 C -0.081 4.081 11 C -0.252 4.252 12 C 0.117 3.883 13 C -0.486 4.486 14 H 0.097 0.903 15 C -0.143 4.143 16 N -0.408 5.408 17 Si 0.733 3.267 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.187 4.187 22 C -0.046 4.046 23 C -0.175 4.175 24 C -0.168 4.168 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.299 0.965 -0.848 12.366 hybrid contribution 0.481 0.169 0.074 0.515 sum -11.818 1.134 -0.774 11.898 Atomic orbital electron populations 1.22947 0.79266 1.03258 1.00997 1.86060 1.20676 1.27552 1.89263 1.18934 0.92236 0.83700 0.97949 1.21025 0.99093 0.92432 1.11976 1.20642 0.93946 0.96450 0.99423 1.19983 0.92735 0.95569 1.03656 1.20972 1.01773 0.92601 1.02064 1.18631 0.93451 0.90415 0.92087 1.17769 0.88758 1.15724 0.97911 1.20244 0.93929 0.98166 0.95809 1.20642 0.93371 1.09980 1.01160 1.17649 0.93194 0.86839 0.90639 1.19588 0.91860 1.43887 0.93228 0.90317 1.25963 1.00816 0.92411 0.95081 1.69811 1.38792 1.32240 1.00001 0.86361 0.81696 0.80533 0.78153 1.18720 1.20271 1.18929 1.20855 0.91400 1.05486 1.00914 1.19125 0.93913 0.98009 0.93513 1.21000 0.99707 1.00090 0.96686 1.20660 0.90593 0.98598 1.06981 0.93029 0.93042 0.88780 0.86425 0.86581 0.92082 0.92874 0.89262 0.89395 0.88955 0.90640 0.86353 0.92843 0.92884 0.91568 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.87 10.49 -19.44 -0.20 -5.08 16 3 C 0.12 1.93 6.68 -39.27 -0.26 1.66 16 4 C -0.23 -3.32 9.04 -39.32 -0.36 -3.67 16 5 C -0.09 -1.29 9.68 -39.66 -0.38 -1.68 16 6 C -0.12 -2.05 4.76 -104.20 -0.50 -2.54 16 7 C -0.12 -1.88 8.61 36.00 0.31 -1.57 16 8 C 0.05 1.06 4.61 -104.90 -0.48 0.57 16 9 C -0.20 -4.41 4.65 -104.63 -0.49 -4.89 16 10 C -0.06 -1.43 9.66 -39.66 -0.38 -1.81 16 11 C -0.23 -5.65 9.73 -39.27 -0.38 -6.03 16 12 C 0.12 3.12 5.57 -106.80 -0.60 2.52 16 13 C -0.46 -11.86 9.03 -37.86 -0.34 -12.20 16 14 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 15 C 0.08 1.87 5.13 -17.33 -0.09 1.78 16 16 N -0.78 -19.81 10.96 55.55 0.61 -19.20 16 17 Si 0.91 18.21 29.60 -169.99 -5.03 13.18 16 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 C -0.17 -4.23 8.26 -39.28 -0.32 -4.55 16 22 C -0.05 -1.03 4.72 -104.70 -0.49 -1.52 16 23 C -0.12 -2.29 8.59 36.01 0.31 -1.98 16 24 C -0.15 -2.81 9.68 -39.03 -0.38 -3.18 16 25 H 0.05 0.47 7.66 -51.92 -0.40 0.07 16 26 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.12 1.38 6.28 -52.49 -0.33 1.05 16 29 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.09 1.59 4.25 -51.93 -0.22 1.37 16 33 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 34 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 36 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.07 1.18 4.22 -51.93 -0.22 0.96 16 40 H 0.13 2.42 8.06 -52.48 -0.42 1.99 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -27.55 325.84 -8.80 -36.34 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.24 Total: 7.64 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -3.85 Total: -37.79 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.61 Total: -19.20 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.20 Total: -5.08 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.55 -8.80 -36.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241680385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.171 kcal (2) G-P(sol) polarization free energy of solvation -27.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds