Wall clock time and date at job start Tue Mar 31 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46728 * 2 1 4 4 C 1.50706 * 109.46870 * 180.02562 * 3 2 1 5 5 C 1.38331 * 119.86995 * 89.99895 * 4 3 2 6 6 C 1.38005 * 120.12562 * 179.97438 * 5 4 3 7 7 C 1.39391 * 119.87072 * 0.02562 * 6 5 4 8 8 C 1.48286 * 120.12744 * 179.97438 * 7 6 5 9 9 C 1.39291 * 120.15482 * 309.71689 * 8 7 6 10 10 C 1.38015 * 119.94081 * 179.74482 * 9 8 7 11 11 C 1.38449 * 120.27382 * 0.53614 * 10 9 8 12 12 C 1.38106 * 120.32204 * 359.74381 * 11 10 9 13 13 C 1.38759 * 120.04831 * 359.97438 * 12 11 10 14 14 O 1.35672 * 120.13483 * 180.02562 * 13 12 11 15 15 C 1.34811 * 116.99721 * 354.40221 * 14 13 12 16 16 H 1.07997 * 120.00340 * 5.06579 * 15 14 13 17 17 C 1.38650 * 119.99814 * 185.06326 * 15 14 13 18 18 N 1.31557 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99984 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47375 * 90.00106 * 19 17 15 21 21 H 1.48504 * 109.46990 * 210.00026 * 19 17 15 22 22 H 1.48496 * 109.47391 * 330.00017 * 19 17 15 23 23 C 1.39397 * 119.74800 * 359.97438 * 7 6 5 24 24 C 1.37996 * 119.87474 * 0.02562 * 23 7 6 25 25 H 1.09001 * 109.47385 * 59.99592 * 1 2 3 26 26 H 1.09004 * 109.46937 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46807 * 299.99440 * 1 2 3 28 28 H 1.09005 * 109.46807 * 240.00560 * 2 1 3 29 29 H 1.09001 * 109.47385 * 120.00408 * 2 1 3 30 30 H 1.09005 * 109.47019 * 60.00690 * 3 2 1 31 31 H 1.09001 * 109.47521 * 300.00324 * 3 2 1 32 32 H 1.07997 * 119.93937 * 359.96121 * 5 4 3 33 33 H 1.07997 * 120.06745 * 179.72865 * 6 5 4 34 34 H 1.08000 * 120.02845 * 0.02562 * 9 8 7 35 35 H 1.08000 * 119.86477 * 180.30493 * 10 9 8 36 36 H 1.08001 * 119.83663 * 179.76355 * 11 10 9 37 37 H 1.07999 * 119.97575 * 180.02562 * 12 11 10 38 38 H 0.97004 * 119.99926 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.06259 * 179.97438 * 23 7 6 40 40 H 1.07995 * 119.94052 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2354 1.4427 -1.2005 6 6 5.6155 1.4433 -1.2072 7 6 6.3156 1.4432 -0.0019 8 6 7.7985 1.4432 -0.0025 9 6 8.4979 0.5169 -0.7725 10 6 9.8780 0.5243 -0.7739 11 6 10.5718 1.4422 -0.0039 12 6 9.8896 2.3618 0.7682 13 6 8.5021 2.3701 0.7751 14 8 7.8301 3.2731 1.5326 15 6 8.5655 4.0588 2.3446 16 1 9.6439 4.0101 2.3116 17 6 7.9374 4.9294 3.2220 18 7 6.6238 4.9884 3.2625 19 14 8.9564 6.0175 4.3476 20 1 9.2422 7.3053 3.6656 21 1 8.2023 6.2775 5.6003 22 1 10.2346 5.3348 4.6720 23 6 5.6165 1.4430 1.2041 24 6 4.2365 1.4424 1.1986 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.6920 1.4422 -2.1337 33 1 6.1520 1.4390 -2.1445 34 1 7.9607 -0.2036 -1.3715 35 1 10.4190 -0.1913 -1.3752 36 1 11.6518 1.4392 -0.0073 37 1 10.4365 3.0756 1.3665 38 1 6.1844 5.5978 3.8761 39 1 6.1538 1.4425 2.1409 40 1 3.6938 1.4427 2.1323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241689535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:32 Heat of formation + Delta-G solvation = 0.468800 kcal Electronic energy + Delta-G solvation = -21077.715302 eV Core-core repulsion = 18015.084589 eV Total energy + Delta-G solvation = -3062.630712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.44867 -38.34657 -36.36811 -34.91311 -32.35058 -31.76577 -30.32745 -29.30749 -28.65269 -25.80778 -25.32005 -22.49395 -22.20419 -21.23502 -21.03208 -19.93385 -17.96502 -17.14272 -15.82252 -15.33387 -14.97588 -14.61896 -14.55098 -14.07025 -13.97860 -13.61385 -13.45788 -13.38315 -13.00072 -12.73456 -12.64502 -12.08113 -11.92450 -11.74789 -11.69822 -11.36492 -11.07562 -10.94657 -10.89479 -10.74830 -10.67148 -10.46472 -10.29509 -10.28699 -9.34591 -8.87115 -8.50230 -8.27350 -7.71767 -7.08224 -6.46340 -4.04821 1.64244 2.07852 2.33448 2.42721 3.11490 3.12387 3.16807 3.94418 4.32036 4.61386 4.98426 5.01945 5.07974 5.16954 5.22348 5.38300 5.43637 5.54933 5.61975 5.67100 5.70678 5.81957 5.84293 5.88649 6.02654 6.06217 6.06737 6.11902 6.26476 6.35292 6.38351 6.59068 6.67105 6.69959 6.76073 7.02307 7.06026 7.17778 7.21752 7.28158 7.35398 7.47243 7.66519 7.79957 7.97390 8.98412 9.67997 10.70238 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.005301 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.550632 B = 5280.844301 C = 7129.433479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.076 4.076 4 C -0.098 4.098 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.016 4.016 8 C -0.133 4.133 9 C -0.062 4.062 10 C -0.216 4.216 11 C -0.071 4.071 12 C -0.235 4.235 13 C 0.164 3.836 14 O -0.164 6.164 15 C -0.396 4.396 16 H 0.091 0.909 17 C 0.043 3.957 18 N -0.854 5.854 19 Si 0.938 3.062 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.074 4.074 24 C -0.113 4.113 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.124 0.876 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.880 -7.710 -5.702 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.113 4.113 4 C -0.098 4.098 5 C -0.144 4.144 6 C -0.134 4.134 7 C -0.016 4.016 8 C -0.135 4.135 9 C -0.080 4.080 10 C -0.235 4.235 11 C -0.090 4.090 12 C -0.254 4.254 13 C 0.109 3.891 14 O -0.066 6.066 15 C -0.472 4.472 16 H 0.109 0.891 17 C -0.162 4.162 18 N -0.489 5.489 19 Si 0.763 3.237 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.092 4.092 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.142 0.858 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.321 -7.510 -5.529 10.736 hybrid contribution 0.752 0.725 0.585 1.197 sum -4.569 -6.785 -4.944 9.558 Atomic orbital electron populations 1.21798 0.96129 1.01315 1.01707 1.21515 0.95145 0.96645 1.02279 1.20563 0.91642 0.96737 1.02399 1.19743 0.94936 1.01784 0.93313 1.20734 0.93911 1.02826 0.96895 1.21094 0.93777 1.01469 0.97105 1.18610 0.91703 0.98338 0.92911 1.17907 0.91283 0.99743 1.04543 1.20714 0.93791 0.96630 0.96840 1.20521 0.93891 1.03260 1.05785 1.20809 0.98528 0.94429 0.95195 1.21121 0.93953 1.04018 1.06288 1.19334 0.90370 0.88627 0.90756 1.83996 1.34569 1.40884 1.47155 1.21339 0.91127 1.18196 1.16518 0.89142 1.25251 0.96112 0.97582 0.97286 1.70051 1.07608 1.35541 1.35654 0.85754 0.79093 0.79762 0.79091 1.19912 1.20251 1.19214 1.21225 0.93607 0.96455 0.97949 1.20860 0.94168 1.01084 0.97016 0.92878 0.92978 0.92773 0.92039 0.91900 0.91329 0.91565 0.86999 0.86712 0.86944 0.87531 0.87490 0.85424 0.92045 0.85831 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 3 C -0.08 -0.99 5.34 -27.88 -0.15 -1.14 16 4 C -0.10 -1.60 5.14 -104.55 -0.54 -2.14 16 5 C -0.13 -2.05 9.68 -39.63 -0.38 -2.43 16 6 C -0.12 -2.11 9.52 -39.24 -0.37 -2.48 16 7 C -0.02 -0.32 5.28 -104.90 -0.55 -0.88 16 8 C -0.13 -2.88 5.49 -104.73 -0.57 -3.45 16 9 C -0.06 -1.14 9.51 -39.27 -0.37 -1.51 16 10 C -0.22 -3.77 10.03 -39.59 -0.40 -4.17 16 11 C -0.07 -1.32 10.03 -39.55 -0.40 -1.71 16 12 C -0.23 -5.11 9.16 -39.44 -0.36 -5.47 16 13 C 0.16 3.96 6.56 -38.74 -0.25 3.70 16 14 O -0.16 -4.54 8.11 0.34 0.00 -4.54 16 15 C -0.40 -10.86 9.49 30.88 0.29 -10.56 16 16 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 17 C 0.04 1.15 5.49 -17.52 -0.10 1.06 16 18 N -0.85 -24.48 13.67 55.48 0.76 -23.72 16 19 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.07 -1.58 8.79 -39.24 -0.34 -1.93 16 24 C -0.11 -2.11 9.68 -39.63 -0.38 -2.49 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.11 1.86 8.04 -52.49 -0.42 1.44 16 34 H 0.11 1.78 8.04 -52.49 -0.42 1.36 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.12 2.86 7.69 -52.49 -0.40 2.46 16 40 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -29.61 339.71 -9.41 -39.02 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.60 Total: 6.97 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: -4.68 Total: -38.13 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.76 Total: -23.72 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: 0.00 Total: -4.54 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.61 -9.41 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241689535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.492 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds