Wall clock time and date at job start Tue Mar 31 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 C 1.50706 * 109.46871 * 119.99597 * 2 1 3 5 5 C 1.38358 * 119.93649 * 300.25531 * 4 2 1 6 6 C 1.38312 * 120.25105 * 180.25736 * 5 4 2 7 7 C 1.38017 * 120.13016 * 359.48673 * 6 5 4 8 8 C 1.39381 * 119.87081 * 0.25674 * 7 6 5 9 9 C 1.48281 * 120.12490 * 179.97438 * 8 7 6 10 10 C 1.39288 * 120.16166 * 130.00175 * 9 8 7 11 11 C 1.38012 * 119.94661 * 179.97438 * 10 9 8 12 12 C 1.38437 * 120.27058 * 0.02562 * 11 10 9 13 13 C 1.38109 * 120.32879 * 0.02562 * 12 11 10 14 14 C 1.38760 * 120.04423 * 359.73912 * 13 12 11 15 15 O 1.35665 * 120.13303 * 180.28180 * 14 13 12 16 16 C 1.34815 * 117.00069 * 354.40685 * 15 14 13 17 17 H 1.07988 * 120.00215 * 5.05947 * 16 15 14 18 18 C 1.38654 * 119.99801 * 185.06422 * 16 15 14 19 19 N 1.31557 * 119.99922 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99747 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47173 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47111 * 120.00239 * 20 18 16 23 23 H 1.48499 * 109.47113 * 239.99935 * 20 18 16 24 24 C 1.37980 * 119.93625 * 120.00272 * 4 2 1 25 25 H 1.08995 * 109.47818 * 300.00509 * 1 2 3 26 26 H 1.08998 * 109.47070 * 60.00337 * 1 2 3 27 27 H 1.09006 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47364 * 239.99211 * 2 1 3 29 29 H 1.08994 * 109.47398 * 59.99868 * 3 2 1 30 30 H 1.09005 * 109.47349 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46651 * 299.99354 * 3 2 1 32 32 H 1.08001 * 119.87510 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.92931 * 179.76674 * 6 5 4 34 34 H 1.07999 * 120.06921 * 180.23049 * 7 6 5 35 35 H 1.08004 * 120.02628 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.86311 * 179.97438 * 11 10 9 37 37 H 1.08009 * 119.83482 * 179.97438 * 12 11 10 38 38 H 1.07997 * 119.97812 * 180.02562 * 13 12 11 39 39 H 0.97003 * 119.99428 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.06255 * 359.97195 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.6928 -0.2395 2.4865 6 6 2.1545 -0.8833 3.6203 7 6 2.9485 -2.0062 3.5044 8 6 3.2893 -2.4882 2.2418 9 6 4.1425 -3.6939 2.1108 10 6 3.7526 -4.7401 1.2781 11 6 4.5503 -5.8600 1.1591 12 6 5.7379 -5.9490 1.8649 13 6 6.1350 -4.9188 2.6946 14 6 5.3455 -3.7846 2.8205 15 8 5.7366 -2.7690 3.6306 16 6 6.8426 -2.9709 4.3746 17 1 7.4201 -3.8747 4.2494 18 6 7.2385 -2.0179 5.3007 19 7 6.5347 -0.9170 5.4536 20 14 8.7706 -2.2978 6.3321 21 1 9.3775 -3.6045 5.9724 22 1 9.7474 -1.2097 6.0730 23 1 8.4045 -2.3020 7.7712 24 6 2.8254 -1.8321 1.1026 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.0680 0.6362 2.5820 33 1 1.8894 -0.5091 4.5981 34 1 3.3055 -2.5103 4.3904 35 1 2.8266 -4.6750 0.7259 36 1 4.2465 -6.6705 0.5133 37 1 6.3567 -6.8288 1.7668 38 1 7.0627 -4.9940 3.2423 39 1 6.8119 -0.2502 6.1012 40 1 3.0860 -2.2014 0.1217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241739926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:35 Heat of formation + Delta-G solvation = 3.741975 kcal Electronic energy + Delta-G solvation = -21395.264842 eV Core-core repulsion = 18332.776065 eV Total energy + Delta-G solvation = -3062.488777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.51038 -38.48399 -36.37254 -35.05977 -32.33975 -31.69658 -29.58365 -29.10887 -27.85721 -27.04358 -25.37735 -23.15268 -22.51680 -21.23220 -20.96529 -19.16872 -17.96909 -16.94479 -16.09558 -15.18836 -15.04308 -14.62298 -14.39057 -14.12682 -13.75656 -13.63813 -13.33517 -13.29638 -13.12107 -12.71417 -12.53756 -12.22731 -11.74337 -11.71983 -11.57834 -11.35211 -11.21366 -11.01781 -10.90756 -10.78504 -10.69356 -10.45299 -10.26055 -10.21855 -9.33849 -8.87966 -8.57977 -8.13272 -7.75001 -7.09990 -6.46618 -4.04989 1.66906 2.04618 2.33801 2.44364 3.10867 3.12430 3.17589 3.94210 4.33656 4.60972 4.90676 5.00377 5.08307 5.22316 5.33670 5.41397 5.52797 5.61034 5.66478 5.68982 5.71353 5.82479 5.87741 5.91004 6.02059 6.06098 6.08929 6.20729 6.29031 6.34436 6.37243 6.60672 6.66843 6.69391 6.78330 7.03239 7.10725 7.15691 7.21948 7.28173 7.35408 7.47378 7.66819 7.79841 7.97319 8.98291 9.67971 10.70057 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.005588 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.119980 B = 5009.628084 C = 6437.519715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.088 4.088 5 C -0.127 4.127 6 C -0.115 4.115 7 C -0.080 4.080 8 C -0.009 4.009 9 C -0.134 4.134 10 C -0.061 4.061 11 C -0.216 4.216 12 C -0.071 4.071 13 C -0.234 4.234 14 C 0.164 3.836 15 O -0.164 6.164 16 C -0.395 4.395 17 H 0.092 0.908 18 C 0.042 3.958 19 N -0.854 5.854 20 Si 0.938 3.062 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.269 0.731 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.138 -0.570 -7.369 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.088 4.088 5 C -0.145 4.145 6 C -0.133 4.133 7 C -0.099 4.099 8 C -0.010 4.010 9 C -0.135 4.135 10 C -0.079 4.079 11 C -0.235 4.235 12 C -0.089 4.089 13 C -0.254 4.254 14 C 0.109 3.891 15 O -0.066 6.066 16 C -0.471 4.471 17 H 0.109 0.891 18 C -0.163 4.163 19 N -0.488 5.488 20 Si 0.763 3.237 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.133 4.133 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.213 -0.110 -7.168 10.901 hybrid contribution 1.034 -0.213 0.605 1.217 sum -7.179 -0.323 -6.563 9.732 Atomic orbital electron populations 1.21840 0.94844 1.01758 1.01421 1.20051 0.95465 0.95895 0.95716 1.21848 1.01532 0.95309 1.01354 1.19567 0.98894 0.96090 0.94239 1.20793 1.01551 1.00062 0.92070 1.20973 0.98446 0.95899 0.98023 1.21227 0.95583 0.95852 0.97192 1.18589 0.95294 0.94188 0.92882 1.17903 0.94842 0.96207 1.04548 1.20712 0.98318 0.92608 0.96306 1.20518 0.97602 0.99336 1.05998 1.20807 0.95703 0.97238 0.95178 1.21121 1.02862 0.95632 1.05746 1.19335 0.91586 0.87689 0.90479 1.83997 1.41953 1.33368 1.47284 1.21389 1.01673 1.06749 1.17303 0.89085 1.25259 0.99166 0.94928 0.96923 1.70063 1.37797 1.07597 1.33384 0.85685 0.79989 0.78723 0.79271 1.19124 1.20166 1.20146 1.20997 0.98969 0.95714 0.97634 0.92567 0.92902 0.92670 0.90900 0.92528 0.92412 0.92925 0.87132 0.86675 0.85911 0.86958 0.87530 0.87495 0.85418 0.92099 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.00 37.15 0.33 -1.20 16 2 C -0.05 -0.68 3.09 -91.77 -0.28 -0.96 16 3 C -0.14 -1.72 9.01 37.16 0.33 -1.39 16 4 C -0.09 -1.42 4.78 -104.67 -0.50 -1.92 16 5 C -0.13 -2.09 8.71 -39.51 -0.34 -2.43 16 6 C -0.12 -2.14 10.03 -39.64 -0.40 -2.54 16 7 C -0.08 -1.71 8.79 -39.24 -0.34 -2.06 16 8 C -0.01 -0.20 5.27 -104.90 -0.55 -0.75 16 9 C -0.13 -2.88 5.49 -104.73 -0.57 -3.46 16 10 C -0.06 -1.13 9.51 -39.27 -0.37 -1.50 16 11 C -0.22 -3.77 10.03 -39.59 -0.40 -4.17 16 12 C -0.07 -1.31 10.03 -39.56 -0.40 -1.71 16 13 C -0.23 -5.10 9.16 -39.44 -0.36 -5.47 16 14 C 0.16 3.96 6.56 -38.74 -0.25 3.70 16 15 O -0.16 -4.54 8.13 0.35 0.00 -4.54 16 16 C -0.39 -10.83 9.49 30.89 0.29 -10.54 16 17 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 18 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 19 N -0.85 -24.49 13.67 55.48 0.76 -23.73 16 20 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.12 -2.09 9.14 -39.24 -0.36 -2.45 16 25 H 0.06 0.60 7.37 -51.93 -0.38 0.22 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 29 H 0.06 0.67 7.40 -51.93 -0.38 0.29 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.11 1.55 7.09 -52.49 -0.37 1.17 16 33 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 34 H 0.12 2.85 7.70 -52.49 -0.40 2.44 16 35 H 0.11 1.78 8.04 -52.48 -0.42 1.36 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 38 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.11 1.88 7.93 -52.49 -0.42 1.46 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -29.61 335.53 -8.93 -38.54 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.45 Total: 7.16 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: -4.27 Total: -37.78 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.76 Total: -23.73 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: 0.00 Total: -4.54 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.61 -8.93 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241739926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.282 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds