Wall clock time and date at job start Tue Mar 31 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38409 * 119.85745 * 2 1 4 4 C 1.37918 * 120.15025 * 179.69777 * 3 2 1 5 5 C 1.39622 * 119.84506 * 0.55160 * 4 3 2 6 6 C 1.47991 * 120.13762 * 179.72155 * 5 4 3 7 7 C 1.39965 * 119.87789 * 129.72984 * 6 5 4 8 8 C 1.36231 * 120.11827 * 180.27740 * 7 6 5 9 9 C 1.40950 * 119.87635 * 359.51433 * 8 7 6 10 10 C 1.41031 * 120.11869 * 180.25555 * 9 8 7 11 11 H 1.08000 * 120.00145 * 204.79921 * 10 9 8 12 12 C 1.40016 * 119.99985 * 24.80126 * 10 9 8 13 13 N 1.30795 * 119.99983 * 17.81678 * 12 10 9 14 14 Si 1.86799 * 120.00300 * 197.82204 * 12 10 9 15 15 H 1.48489 * 109.47336 * 89.99535 * 14 12 10 16 16 H 1.48503 * 109.47143 * 209.99932 * 14 12 10 17 17 H 1.48503 * 109.46886 * 329.99358 * 14 12 10 18 18 C 1.40912 * 119.76633 * 0.47714 * 9 8 7 19 19 C 1.36261 * 119.87654 * 359.75778 * 18 9 8 20 20 C 1.50701 * 119.94160 * 179.97438 * 19 18 9 21 21 C 1.39578 * 119.71586 * 359.44940 * 5 4 3 22 22 C 1.37956 * 119.85445 * 0.27313 * 21 5 4 23 23 C 1.50695 * 119.93192 * 180.02562 * 22 21 5 24 24 O 1.42901 * 109.46921 * 0.02562 * 23 22 21 25 25 H 1.08990 * 109.47511 * 270.02801 * 1 2 3 26 26 H 1.09001 * 109.46938 * 30.02793 * 1 2 3 27 27 H 1.09003 * 109.47171 * 150.02231 * 1 2 3 28 28 H 1.08007 * 119.92343 * 359.97376 * 3 2 1 29 29 H 1.07994 * 120.07711 * 180.29713 * 4 3 2 30 30 H 1.07995 * 119.94114 * 359.97438 * 7 6 5 31 31 H 1.07995 * 120.06363 * 179.71880 * 8 7 6 32 32 H 0.96997 * 120.00325 * 180.02562 * 13 12 10 33 33 H 1.07997 * 120.05934 * 179.77401 * 18 9 8 34 34 H 1.08998 * 109.47632 * 270.02286 * 20 19 18 35 35 H 1.08999 * 109.46892 * 30.02742 * 20 19 18 36 36 H 1.09005 * 109.46812 * 150.01834 * 20 19 18 37 37 H 1.08010 * 120.07466 * 180.25810 * 21 5 4 38 38 H 1.09002 * 109.47585 * 119.99726 * 23 22 21 39 39 H 1.09000 * 109.47837 * 240.00564 * 23 22 21 40 40 H 0.96703 * 114.00223 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2004 0.0000 4 6 3.5752 1.2074 0.0063 5 6 4.2762 0.0000 0.0010 6 6 5.7561 0.0000 0.0015 7 6 6.4531 -0.7799 0.9315 8 6 7.8154 -0.7792 0.9400 9 6 8.5229 0.0010 0.0033 10 6 9.9332 0.0014 0.0040 11 1 10.4732 0.8462 -0.3973 12 6 10.6334 -1.0935 0.5250 13 7 10.0267 -2.2410 0.6864 14 14 12.4338 -0.9156 0.9898 15 1 12.5391 -0.4897 2.4084 16 1 13.1222 -2.2194 0.8119 17 1 13.0716 0.1037 0.1182 18 6 7.8162 0.7842 -0.9309 19 6 6.4536 0.7799 -0.9275 20 6 5.6963 1.6174 -1.9256 21 6 3.5753 -1.2070 0.0010 22 6 2.1958 -1.2001 0.0006 23 6 1.4372 -2.5022 0.0012 24 8 2.3617 -3.5919 0.0028 25 1 -0.3634 0.0005 1.0275 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6524 2.1337 -0.0004 29 1 4.1116 2.1447 0.0111 30 1 5.9100 -1.3796 1.6469 31 1 8.3523 -1.3778 1.6610 32 1 10.5115 -2.9994 1.0476 33 1 8.3535 1.3866 -1.6484 34 1 5.5131 2.6064 -1.5055 35 1 6.2834 1.7136 -2.8389 36 1 4.7445 1.1378 -2.1544 37 1 4.1118 -2.1445 0.0012 38 1 0.8101 -2.5570 0.8910 39 1 0.8107 -2.5583 -0.8890 40 1 1.9425 -4.4634 0.0037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242385950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:54 Heat of formation + Delta-G solvation = -28.223276 kcal Electronic energy + Delta-G solvation = -21095.651187 eV Core-core repulsion = 18031.776293 eV Total energy + Delta-G solvation = -3063.874894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.41658 -37.71220 -36.42803 -34.27916 -32.63000 -31.47410 -30.80848 -29.73144 -27.09557 -26.00274 -25.58278 -24.27458 -21.75970 -20.82212 -20.20200 -19.38302 -17.30739 -16.94096 -15.95460 -15.28966 -15.03851 -14.70824 -14.66313 -13.89983 -13.76916 -13.60026 -13.31014 -13.16270 -12.79166 -12.50262 -12.20141 -12.00065 -11.84367 -11.66455 -11.61844 -11.36083 -11.16054 -10.97024 -10.85156 -10.64650 -10.30566 -10.24628 -10.16430 -9.60109 -9.40029 -9.21661 -8.30365 -8.10567 -7.40306 -7.05813 -6.82057 -4.36729 1.67786 1.88641 2.76244 3.04383 3.07833 3.09993 3.18576 3.88473 4.20861 4.27363 4.60139 5.04087 5.15594 5.25717 5.31937 5.41870 5.51654 5.64992 5.67046 5.72358 5.88638 5.98823 6.04951 6.10884 6.19855 6.33049 6.41246 6.53603 6.60605 6.63186 6.85871 6.97730 7.00148 7.03242 7.13744 7.31718 7.37757 7.51170 7.63337 7.68923 7.94061 8.03940 8.14930 8.25675 8.60172 8.83549 8.95286 10.10844 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.004033 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.449427 B = 6940.958725 C = 7735.250083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.122 4.122 5 C 0.012 3.988 6 C -0.200 4.200 7 C -0.074 4.074 8 C -0.172 4.172 9 C 0.119 3.881 10 C -0.455 4.455 11 H 0.079 0.921 12 C 0.075 3.925 13 N -0.783 5.783 14 Si 0.910 3.090 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.228 4.228 19 C -0.038 4.038 20 C -0.107 4.107 21 C -0.098 4.098 22 C -0.097 4.097 23 C 0.123 3.877 24 O -0.564 6.564 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.282 0.718 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.129 0.871 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 0.673 -0.458 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.138 4.138 4 C -0.140 4.140 5 C 0.012 3.988 6 C -0.201 4.201 7 C -0.092 4.092 8 C -0.192 4.192 9 C 0.117 3.883 10 C -0.484 4.484 11 H 0.098 0.902 12 C -0.144 4.144 13 N -0.408 5.408 14 Si 0.734 3.266 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.247 4.247 19 C -0.039 4.039 20 C -0.164 4.164 21 C -0.116 4.116 22 C -0.097 4.097 23 C 0.045 3.955 24 O -0.369 6.369 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -13.355 0.911 -0.399 13.392 hybrid contribution 0.446 -0.515 0.226 0.718 sum -12.908 0.397 -0.173 12.915 Atomic orbital electron populations 1.20717 0.92095 1.02094 1.01629 1.19414 0.95112 0.92465 1.04555 1.20761 0.94184 0.96573 1.02283 1.21348 0.93416 0.98024 1.01246 1.19007 0.93469 0.91897 0.94472 1.17924 0.89182 1.08402 1.04568 1.20443 0.94521 0.97072 0.97202 1.20969 0.92385 1.04529 1.01275 1.17667 0.93211 0.89064 0.88401 1.19636 0.91669 1.02625 1.34459 0.90242 1.25980 1.01072 0.94357 0.92978 1.69824 1.38791 1.00768 1.31391 0.86287 0.81611 0.78713 0.80008 1.19167 1.20227 1.18521 1.20515 0.92518 1.08637 1.03035 1.19067 0.93578 0.95939 0.95275 1.20802 0.99521 0.98512 0.97542 1.21168 0.92747 0.98299 0.99408 1.19370 0.94231 0.92676 1.03385 1.20841 0.90251 0.85057 0.99315 1.86566 1.36055 1.16602 1.97688 0.91807 0.91949 0.92221 0.86816 0.86337 0.89345 0.86483 0.90658 0.88900 0.92675 0.93012 0.92520 0.85326 0.92918 0.92886 0.77644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.59 36.00 0.35 -0.78 16 2 C -0.12 -1.67 5.89 -104.51 -0.62 -2.28 16 3 C -0.12 -1.81 9.68 -39.64 -0.38 -2.19 16 4 C -0.12 -2.15 7.90 -39.18 -0.31 -2.46 16 5 C 0.01 0.23 4.70 -104.88 -0.49 -0.26 16 6 C -0.20 -4.60 5.50 -104.62 -0.58 -5.17 16 7 C -0.07 -1.80 9.43 -39.66 -0.37 -2.18 16 8 C -0.17 -4.55 8.63 -39.28 -0.34 -4.89 16 9 C 0.12 3.20 5.57 -106.80 -0.60 2.60 16 10 C -0.46 -12.03 9.03 -37.86 -0.34 -12.37 16 11 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 12 C 0.08 1.88 5.13 -17.33 -0.09 1.79 16 13 N -0.78 -20.18 10.96 55.55 0.61 -19.57 16 14 Si 0.91 18.47 29.60 -169.99 -5.03 13.44 16 15 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 18 C -0.23 -5.65 9.36 -39.28 -0.37 -6.01 16 19 C -0.04 -0.88 5.83 -104.71 -0.61 -1.49 16 20 C -0.11 -1.99 8.44 36.01 0.30 -1.69 16 21 C -0.10 -1.89 8.83 -39.18 -0.35 -2.24 16 22 C -0.10 -1.55 5.87 -104.68 -0.61 -2.16 16 23 C 0.12 1.53 6.14 36.00 0.22 1.75 16 24 O -0.56 -7.55 12.13 -35.23 -0.43 -7.98 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.57 8.08 -51.93 -0.42 0.16 16 27 H 0.06 0.54 6.62 -51.93 -0.34 0.20 16 28 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.12 2.00 6.86 -52.49 -0.36 1.64 16 30 H 0.09 2.02 8.03 -52.49 -0.42 1.60 16 31 H 0.12 3.17 6.17 -52.49 -0.32 2.84 16 32 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 33 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.05 0.92 7.49 -51.93 -0.39 0.53 16 35 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.06 1.03 6.44 -51.93 -0.33 0.70 16 37 H 0.13 2.66 6.98 -52.48 -0.37 2.30 16 38 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.05 0.56 7.48 -51.93 -0.39 0.17 16 40 H 0.38 2.93 9.12 45.56 0.42 3.35 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -29.53 329.49 -9.66 -39.19 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.59 Total: 9.99 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: -5.19 Total: -40.03 kcal Atomic # 7 Polarization: -20.18 SS G_CDS: 0.61 Total: -19.57 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.43 Total: -7.98 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.53 -9.66 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242385950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.968 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds