Wall clock time and date at job start Tue Mar 31 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36265 * 120.06307 * 2 1 4 4 C 1.39918 * 120.12234 * 180.02562 * 3 2 1 5 5 C 1.47982 * 119.88431 * 179.97438 * 4 3 2 6 6 C 1.39624 * 120.14046 * 359.71176 * 5 4 3 7 7 C 1.37922 * 119.84816 * 179.69940 * 6 5 4 8 8 C 1.38410 * 120.14724 * 0.59112 * 7 6 5 9 9 C 1.38363 * 120.29201 * 359.67964 * 8 7 6 10 10 C 1.50694 * 119.93068 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47564 * 160.02113 * 10 9 8 12 12 C 1.52998 * 109.47278 * 280.02325 * 10 9 8 13 13 O 1.42906 * 109.46863 * 40.02194 * 10 9 8 14 14 C 1.37959 * 120.14257 * 0.02562 * 9 8 7 15 15 C 1.39956 * 120.23459 * 359.95927 * 4 3 2 16 16 C 1.36234 * 120.12275 * 0.02562 * 15 4 3 17 17 C 1.40916 * 120.05735 * 180.02562 * 2 1 3 18 18 C 1.41027 * 120.11888 * 0.25893 * 17 2 1 19 19 H 1.08000 * 119.99944 * 333.33435 * 18 17 2 20 20 C 1.40007 * 120.00362 * 153.33694 * 18 17 2 21 21 N 1.30798 * 119.99935 * 343.89654 * 20 18 17 22 22 Si 1.86797 * 120.00316 * 163.89389 * 20 18 17 23 23 H 1.48497 * 109.46998 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47105 * 120.00051 * 22 20 18 25 25 H 1.48501 * 109.47725 * 240.00125 * 22 20 18 26 26 H 1.08996 * 109.47497 * 270.00327 * 1 2 3 27 27 H 1.09009 * 109.47005 * 29.99973 * 1 2 3 28 28 H 1.09004 * 109.47575 * 149.99528 * 1 2 3 29 29 H 1.07997 * 119.94146 * 0.02562 * 3 2 1 30 30 H 1.07996 * 120.07496 * 359.96598 * 6 5 4 31 31 H 1.08005 * 119.92541 * 180.29219 * 7 6 5 32 32 H 1.08005 * 119.85365 * 179.69773 * 8 7 6 33 33 H 1.09000 * 109.47308 * 59.99880 * 12 10 9 34 34 H 1.08997 * 109.47373 * 179.97438 * 12 10 9 35 35 H 1.08997 * 109.47415 * 300.00149 * 12 10 9 36 36 H 0.96696 * 113.99709 * 299.99880 * 13 10 9 37 37 H 1.07999 * 120.07546 * 180.02562 * 14 9 8 38 38 H 1.08006 * 119.93786 * 180.02562 * 15 4 3 39 39 H 1.08007 * 120.06202 * 179.97438 * 16 15 4 40 40 H 0.97001 * 119.99756 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1793 0.0000 4 6 3.5888 1.1808 -0.0005 5 6 4.3248 2.4646 -0.0011 6 6 3.6259 3.6734 -0.0072 7 6 4.3180 4.8664 -0.0014 8 6 5.7020 4.8672 -0.0020 9 6 6.4006 3.6728 -0.0016 10 6 7.9075 3.6832 -0.0028 11 1 8.2778 2.7202 0.3487 12 6 8.4147 3.9367 -1.4239 13 8 8.3774 4.7189 0.8625 14 6 5.7206 2.4725 -0.0013 15 6 4.2948 -0.0277 -0.0002 16 6 3.6222 -1.2124 0.0001 17 6 2.2128 -1.2197 -0.0005 18 6 1.5114 -2.4431 -0.0066 19 1 0.5161 -2.4971 0.4091 20 6 2.1054 -3.5879 -0.5515 21 7 3.1532 -3.4753 -1.3262 22 14 1.4015 -5.2761 -0.1720 23 1 0.2242 -5.1321 0.7215 24 1 0.9853 -5.9345 -1.4363 25 1 2.4352 -6.1039 0.5001 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8901 -0.5139 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6497 2.1147 0.0004 30 1 2.5460 3.6741 -0.0120 31 1 3.7786 5.8021 -0.0013 32 1 6.2392 5.8042 -0.0024 33 1 8.0445 4.8997 -1.7754 34 1 9.5047 3.9446 -1.4247 35 1 8.0563 3.1468 -2.0839 36 1 8.0858 5.6053 0.6093 37 1 6.2670 1.5409 -0.0006 38 1 5.3748 -0.0210 -0.0002 39 1 4.1680 -2.1444 -0.0001 40 1 3.5649 -4.2685 -1.7034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242548291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:50 Heat of formation + Delta-G solvation = -28.956502 kcal Electronic energy + Delta-G solvation = -20897.416344 eV Core-core repulsion = 17833.509654 eV Total energy + Delta-G solvation = -3063.906689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.43352 -37.96004 -36.64357 -33.98675 -32.24637 -31.91062 -30.55976 -29.31519 -28.51445 -26.29664 -24.94217 -23.59544 -22.27908 -21.56436 -19.85020 -19.19626 -17.41510 -17.24566 -15.85454 -15.57865 -15.35059 -14.85212 -14.22097 -14.14736 -13.67332 -13.24360 -13.22320 -13.19346 -12.79814 -12.66716 -12.11662 -12.03784 -11.95357 -11.77964 -11.43511 -11.30671 -11.20476 -11.13840 -10.87013 -10.79404 -10.57345 -10.43822 -10.01307 -9.63110 -9.43475 -9.34548 -8.57415 -8.39151 -7.50640 -7.08592 -6.90394 -4.46696 1.54684 1.79931 2.72622 2.97135 3.00346 3.02474 3.14143 3.78346 4.14540 4.45408 4.65934 4.78020 5.06715 5.16978 5.33630 5.36448 5.54911 5.60163 5.66672 5.79180 5.91728 6.00871 6.03835 6.13340 6.17007 6.32977 6.45366 6.49512 6.59722 6.65190 6.79957 6.88250 6.90091 6.94064 7.02003 7.15550 7.35076 7.45125 7.52780 7.58207 7.82218 7.92141 8.02729 8.13431 8.45738 8.69407 8.81574 9.96809 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.003828 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.882621 B = 7313.155336 C = 8208.441439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.202 4.202 3 C -0.060 4.060 4 C -0.204 4.204 5 C 0.028 3.972 6 C -0.146 4.146 7 C -0.107 4.107 8 C -0.157 4.157 9 C -0.109 4.109 10 C 0.144 3.856 11 H 0.104 0.896 12 C -0.178 4.178 13 O -0.560 6.560 14 C -0.135 4.135 15 C -0.078 4.078 16 C -0.168 4.168 17 C 0.123 3.877 18 C -0.443 4.443 19 H 0.085 0.915 20 C 0.073 3.927 21 N -0.779 5.779 22 Si 0.910 3.090 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.270 1.270 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.371 0.629 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 9.027 0.048 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.203 4.203 3 C -0.078 4.078 4 C -0.205 4.205 5 C 0.028 3.972 6 C -0.164 4.164 7 C -0.125 4.125 8 C -0.175 4.175 9 C -0.109 4.109 10 C 0.085 3.915 11 H 0.122 0.878 12 C -0.236 4.236 13 O -0.366 6.366 14 C -0.153 4.153 15 C -0.097 4.097 16 C -0.187 4.187 17 C 0.120 3.880 18 C -0.471 4.471 19 H 0.103 0.897 20 C -0.147 4.147 21 N -0.403 5.403 22 Si 0.734 3.266 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.219 0.781 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.631 8.358 0.188 9.557 hybrid contribution -0.528 -0.350 -0.338 0.718 sum 4.103 8.008 -0.150 8.999 Atomic orbital electron populations 1.20416 0.93377 1.00685 0.99761 1.19454 0.94535 0.93025 1.13270 1.20263 0.92811 0.96112 0.98643 1.18054 0.92532 0.90551 1.19339 1.18998 0.92316 0.93067 0.92780 1.21212 0.99728 0.91838 1.03660 1.20877 0.93988 0.97508 1.00166 1.20533 0.94198 0.96468 1.06276 1.20283 0.95597 0.93913 1.01101 1.20794 0.89096 0.91807 0.89777 0.87803 1.22467 1.01413 1.02763 0.96930 1.86593 1.76469 1.18324 1.55213 1.21002 0.93898 0.96814 1.03619 1.20513 0.97344 0.92474 0.99323 1.20974 0.94486 0.96595 1.06677 1.17604 0.91913 0.91717 0.86746 1.19747 1.02121 0.92648 1.32575 0.89715 1.26035 0.94177 1.01777 0.92680 1.69818 1.17645 1.32240 1.20593 0.86218 0.80193 0.80789 0.79401 1.18165 1.19779 1.19495 0.93931 0.94265 0.91998 0.88946 0.86375 0.86934 0.87519 0.92304 0.91853 0.91190 0.78128 0.86258 0.89075 0.86415 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.40 36.00 0.34 -1.37 16 2 C -0.20 -4.71 5.90 -104.32 -0.62 -5.32 16 3 C -0.06 -1.33 9.00 -39.66 -0.36 -1.69 16 4 C -0.20 -4.52 5.90 -104.63 -0.62 -5.13 16 5 C 0.03 0.56 5.88 -104.88 -0.62 -0.06 16 6 C -0.15 -2.54 9.43 -39.18 -0.37 -2.91 16 7 C -0.11 -1.60 10.03 -39.63 -0.40 -2.00 16 8 C -0.16 -2.21 9.32 -39.47 -0.37 -2.58 16 9 C -0.11 -1.65 4.97 -104.68 -0.52 -2.17 16 10 C 0.14 1.85 3.82 -27.89 -0.11 1.74 16 11 H 0.10 1.34 8.00 -51.93 -0.42 0.93 16 12 C -0.18 -1.92 9.51 37.16 0.35 -1.57 16 13 O -0.56 -7.09 13.19 -35.23 -0.46 -7.55 16 14 C -0.14 -2.39 9.05 -39.18 -0.35 -2.75 16 15 C -0.08 -1.80 9.36 -39.66 -0.37 -2.17 16 16 C -0.17 -4.21 8.61 -39.28 -0.34 -4.55 16 17 C 0.12 3.12 5.56 -106.80 -0.59 2.53 16 18 C -0.44 -10.99 8.09 -37.86 -0.31 -11.30 16 19 H 0.08 2.01 6.88 -52.49 -0.36 1.65 16 20 C 0.07 1.73 5.15 -17.33 -0.09 1.64 16 21 N -0.78 -19.08 10.97 55.55 0.61 -18.47 16 22 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.69 8.08 -51.92 -0.42 0.27 16 28 H 0.06 1.25 6.77 -51.93 -0.35 0.90 16 29 H 0.09 1.82 6.18 -52.49 -0.32 1.49 16 30 H 0.12 1.95 6.18 -52.49 -0.32 1.62 16 31 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.11 1.17 6.77 -52.48 -0.36 0.82 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.37 3.40 7.49 45.56 0.34 3.74 16 37 H 0.12 2.05 6.16 -52.49 -0.32 1.72 16 38 H 0.09 1.89 6.18 -52.48 -0.32 1.57 16 39 H 0.12 3.02 6.24 -52.48 -0.33 2.70 16 40 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -27.21 327.88 -9.71 -36.91 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -4.43 Total: 11.28 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: -5.33 Total: -39.66 kcal Atomic # 7 Polarization: -19.08 SS G_CDS: 0.61 Total: -18.47 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.46 Total: -7.55 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.21 -9.71 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242548291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.958 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds