Wall clock time and date at job start Tue Mar 31 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36270 * 119.94277 * 2 1 4 4 C 1.40904 * 119.87972 * 179.97438 * 3 2 1 5 5 C 1.41031 * 120.11900 * 180.02562 * 4 3 2 6 6 H 1.07992 * 119.99753 * 24.66748 * 5 4 3 7 7 C 1.40011 * 120.00057 * 204.66847 * 5 4 3 8 8 N 1.30800 * 119.99912 * 17.93745 * 7 5 4 9 9 Si 1.86801 * 120.00227 * 197.93774 * 7 5 4 10 10 H 1.48494 * 109.47228 * 89.99804 * 9 7 5 11 11 H 1.48500 * 109.47111 * 210.00107 * 9 7 5 12 12 H 1.48503 * 109.46837 * 329.99831 * 9 7 5 13 13 C 1.40956 * 119.76512 * 0.02562 * 4 3 2 14 14 C 1.36230 * 119.87523 * 359.71340 * 13 4 3 15 15 C 1.39921 * 119.93603 * 179.97438 * 2 1 3 16 16 C 1.47991 * 119.88254 * 0.02562 * 15 2 1 17 17 C 1.39623 * 120.14023 * 310.00149 * 16 15 2 18 18 C 1.37922 * 119.84736 * 179.97438 * 17 16 15 19 19 C 1.38403 * 120.14780 * 359.97438 * 18 17 16 20 20 C 1.38367 * 120.29100 * 0.04218 * 19 18 17 21 21 C 1.50701 * 119.92964 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47349 * 159.99782 * 21 20 19 23 23 C 1.52993 * 109.47177 * 280.00227 * 21 20 19 24 24 O 1.42901 * 109.46889 * 39.99839 * 21 20 19 25 25 C 1.37956 * 120.14555 * 359.95275 * 20 19 18 26 26 H 1.08995 * 109.47146 * 270.02330 * 1 2 3 27 27 H 1.09005 * 109.47241 * 30.01758 * 1 2 3 28 28 H 1.09003 * 109.47448 * 150.01753 * 1 2 3 29 29 H 1.07996 * 120.05668 * 359.96017 * 3 2 1 30 30 H 0.97000 * 119.99946 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.05880 * 180.02562 * 13 4 3 32 32 H 1.07998 * 119.94103 * 180.26733 * 14 13 4 33 33 H 1.07999 * 120.07685 * 0.25856 * 17 16 15 34 34 H 1.08005 * 119.92429 * 180.02562 * 18 17 16 35 35 H 1.08001 * 119.85820 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.47345 * 59.99552 * 23 21 20 37 37 H 1.09004 * 109.47449 * 180.02562 * 23 21 20 38 38 H 1.09011 * 109.47133 * 299.99621 * 23 21 20 39 39 H 0.96703 * 114.00204 * 299.99898 * 24 21 20 40 40 H 1.08004 * 120.07834 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1808 0.0000 4 6 3.5962 1.1793 0.0005 5 6 4.3052 2.3984 0.0011 6 1 3.8418 3.2923 0.3914 7 6 5.6099 2.4497 -0.5045 8 7 6.0477 1.4940 -1.2828 9 14 6.7253 3.8830 -0.0674 10 1 7.4826 3.5618 1.1689 11 1 7.6765 4.1275 -1.1812 12 1 5.9033 5.0991 0.1575 13 6 4.2946 -0.0451 0.0005 14 6 3.6048 -1.2198 0.0059 15 6 2.2052 -1.2125 0.0005 16 6 1.4612 -2.4918 0.0005 17 6 0.4375 -2.7074 0.9251 18 6 -0.2523 -3.9017 0.9194 19 6 0.0679 -4.8850 -0.0005 20 6 1.0816 -4.6778 -0.9192 21 6 1.4239 -5.7542 -1.9167 22 1 1.9639 -5.3143 -2.7551 23 6 2.3007 -6.8125 -1.2444 24 8 0.2216 -6.3634 -2.3915 25 6 1.7793 -3.4877 -0.9243 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5136 29 1 1.6472 2.1161 -0.0006 30 1 6.9517 1.5294 -1.6328 31 1 5.3746 -0.0518 0.0014 32 1 4.1388 -2.1585 0.0103 33 1 0.1832 -1.9390 1.6402 34 1 -1.0448 -4.0697 1.6338 35 1 -0.4756 -5.8183 -0.0010 36 1 1.7607 -7.2525 -0.4060 37 1 2.5487 -7.5909 -1.9660 38 1 3.2179 -6.3479 -0.8822 39 1 -0.3107 -6.7762 -1.6977 40 1 2.5707 -3.3272 -1.6416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242552720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:09 Heat of formation + Delta-G solvation = -29.332698 kcal Electronic energy + Delta-G solvation = -21036.720044 eV Core-core repulsion = 17972.797042 eV Total energy + Delta-G solvation = -3063.923002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.52000 -37.94253 -36.59580 -34.13892 -32.06429 -31.38386 -31.26056 -29.18645 -28.68619 -25.90009 -25.24702 -23.60448 -22.29175 -20.97694 -20.29587 -19.56429 -17.30372 -16.95645 -15.73327 -15.63983 -15.39262 -15.01778 -14.14173 -14.09057 -13.77594 -13.68527 -13.26736 -13.12708 -12.77869 -12.59965 -12.13267 -12.03218 -11.89373 -11.82660 -11.52039 -11.40941 -11.29464 -11.08252 -10.97664 -10.76897 -10.52474 -10.32074 -10.02884 -9.68774 -9.47379 -9.29449 -8.47148 -8.31824 -7.48930 -7.16022 -6.89001 -4.43688 1.62940 1.75462 2.70663 3.00478 3.02808 3.04075 3.13273 3.83532 4.10176 4.44035 4.54542 4.75712 5.02966 5.14192 5.31064 5.33392 5.56662 5.57207 5.64101 5.78258 5.90475 5.97043 5.98438 6.00610 6.08986 6.25607 6.32471 6.42277 6.46693 6.57097 6.79296 6.83629 6.92287 6.93052 7.04638 7.23762 7.29923 7.39210 7.55667 7.55940 7.85960 7.96990 8.06030 8.18631 8.52982 8.76719 8.87880 10.03918 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025370 B = 0.003877 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.388137 B = 7220.853593 C = 7982.426867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.036 4.036 3 C -0.227 4.227 4 C 0.120 3.880 5 C -0.453 4.453 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.783 5.783 9 Si 0.910 3.090 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.261 1.261 13 C -0.173 4.173 14 C -0.075 4.075 15 C -0.205 4.205 16 C 0.023 3.977 17 C -0.126 4.126 18 C -0.117 4.117 19 C -0.143 4.143 20 C -0.117 4.117 21 C 0.144 3.856 22 H 0.105 0.895 23 C -0.178 4.178 24 O -0.560 6.560 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.283 0.717 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.371 0.629 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 -10.141 1.918 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.037 4.037 3 C -0.247 4.247 4 C 0.117 3.883 5 C -0.482 4.482 6 H 0.098 0.902 7 C -0.144 4.144 8 N -0.407 5.407 9 Si 0.734 3.266 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.185 1.185 13 C -0.192 4.192 14 C -0.093 4.093 15 C -0.206 4.206 16 C 0.023 3.977 17 C -0.144 4.144 18 C -0.135 4.135 19 C -0.161 4.161 20 C -0.117 4.117 21 C 0.085 3.915 22 H 0.123 0.877 23 C -0.236 4.236 24 O -0.366 6.366 25 C -0.136 4.136 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.218 0.782 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.660 -9.982 1.185 11.536 hybrid contribution 0.479 0.491 0.697 0.978 sum -5.181 -9.491 1.883 10.975 Atomic orbital electron populations 1.20815 0.93836 1.01227 1.00606 1.19073 0.93500 0.92731 0.98348 1.20525 0.94212 0.95376 1.14567 1.17675 0.90905 0.93218 0.86509 1.19657 0.97570 0.96144 1.34831 0.90165 1.25987 0.98504 0.97388 0.92522 1.69820 1.17827 1.31776 1.21262 0.86276 0.79716 0.81449 0.79145 1.19122 1.20177 1.18471 1.20973 0.99702 0.91397 1.07115 1.20418 0.92405 0.96947 0.99552 1.17913 0.92498 0.89783 1.20427 1.18965 0.93236 0.93235 0.92253 1.21382 0.96970 0.96962 0.99081 1.20923 0.99785 0.94006 0.98799 1.20599 0.99069 0.99200 0.97221 1.20328 0.97606 0.95976 0.97786 1.20798 0.85179 0.90283 0.95221 0.87729 1.22470 1.00930 0.99193 1.00974 1.86602 1.35673 1.75855 1.38425 1.21148 1.00368 0.92734 0.99354 0.92623 0.92935 0.92484 0.88837 0.90598 0.86439 0.89389 0.86285 0.86818 0.87393 0.92312 0.91816 0.91217 0.78157 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 8.43 36.00 0.30 -1.65 16 2 C -0.04 -0.80 5.83 -104.70 -0.61 -1.41 16 3 C -0.23 -5.48 9.36 -39.28 -0.37 -5.85 16 4 C 0.12 3.12 5.57 -106.80 -0.60 2.52 16 5 C -0.45 -11.69 9.03 -37.86 -0.34 -12.03 16 6 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 7 C 0.08 1.83 5.13 -17.33 -0.09 1.74 16 8 N -0.78 -19.62 10.96 55.55 0.61 -19.02 16 9 Si 0.91 18.05 29.60 -169.99 -5.03 13.02 16 10 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 12 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 13 C -0.17 -4.39 8.63 -39.28 -0.34 -4.73 16 14 C -0.07 -1.73 9.44 -39.66 -0.37 -2.10 16 15 C -0.21 -4.49 5.50 -104.63 -0.58 -5.07 16 16 C 0.02 0.44 4.71 -104.88 -0.49 -0.06 16 17 C -0.13 -2.09 7.90 -39.18 -0.31 -2.40 16 18 C -0.12 -1.66 10.03 -39.64 -0.40 -2.05 16 19 C -0.14 -1.92 9.32 -39.47 -0.37 -2.29 16 20 C -0.12 -1.71 4.97 -104.68 -0.52 -2.23 16 21 C 0.14 1.80 3.82 -27.89 -0.11 1.69 16 22 H 0.10 1.34 8.00 -51.93 -0.42 0.93 16 23 C -0.18 -1.85 9.51 37.15 0.35 -1.50 16 24 O -0.56 -6.92 13.19 -35.23 -0.46 -7.38 16 25 C -0.12 -2.04 9.13 -39.19 -0.36 -2.40 16 26 H 0.06 0.90 7.47 -51.93 -0.39 0.51 16 27 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 28 H 0.06 1.00 6.43 -51.93 -0.33 0.67 16 29 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 31 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 32 H 0.09 1.87 8.04 -52.49 -0.42 1.44 16 33 H 0.12 1.92 6.81 -52.49 -0.36 1.57 16 34 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.11 1.12 6.77 -52.49 -0.36 0.76 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.37 3.26 7.49 45.56 0.34 3.60 16 40 H 0.12 2.06 8.02 -52.48 -0.42 1.64 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -27.64 331.40 -9.84 -37.48 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.76 Total: 10.72 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: -5.19 Total: -39.81 kcal Atomic # 7 Polarization: -19.62 SS G_CDS: 0.61 Total: -19.02 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.46 Total: -7.38 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.64 -9.84 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242552720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.150 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds