Wall clock time and date at job start Tue Mar 31 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36270 * 119.94148 * 2 1 4 4 C 1.40909 * 119.87341 * 180.31612 * 3 2 1 5 5 C 1.41035 * 120.11770 * 179.72203 * 4 3 2 6 6 H 1.08004 * 119.99371 * 330.09733 * 5 4 3 7 7 C 1.40008 * 120.00055 * 150.09947 * 5 4 3 8 8 N 1.30802 * 119.99486 * 161.72725 * 7 5 4 9 9 Si 1.86792 * 120.00243 * 341.73056 * 7 5 4 10 10 H 1.48500 * 109.47247 * 95.41705 * 9 7 5 11 11 H 1.48499 * 109.47131 * 215.41405 * 9 7 5 12 12 H 1.48503 * 109.47263 * 335.41532 * 9 7 5 13 13 C 1.40949 * 119.76747 * 359.70096 * 4 3 2 14 14 C 1.36233 * 119.87909 * 359.97438 * 13 4 3 15 15 C 1.39922 * 119.93383 * 179.74226 * 2 1 3 16 16 C 1.47988 * 119.88193 * 359.97438 * 15 2 1 17 17 C 1.39617 * 120.14336 * 309.71888 * 16 15 2 18 18 C 1.37917 * 119.85278 * 179.97438 * 17 16 15 19 19 C 1.38405 * 120.14519 * 0.02562 * 18 17 16 20 20 C 1.38364 * 120.29562 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.93159 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.47045 * 205.00087 * 21 20 19 23 23 C 1.52993 * 109.47200 * 84.99870 * 21 20 19 24 24 O 1.42903 * 109.46916 * 324.99598 * 21 20 19 25 25 C 1.37964 * 120.14240 * 359.97438 * 20 19 18 26 26 H 1.09005 * 109.46974 * 270.25772 * 1 2 3 27 27 H 1.08996 * 109.47348 * 30.25415 * 1 2 3 28 28 H 1.08997 * 109.47809 * 150.26247 * 1 2 3 29 29 H 1.07998 * 120.06165 * 359.97438 * 3 2 1 30 30 H 0.97006 * 119.99614 * 179.97438 * 8 7 5 31 31 H 1.08009 * 120.06254 * 179.97438 * 13 4 3 32 32 H 1.07996 * 119.94279 * 180.02562 * 14 13 4 33 33 H 1.07998 * 120.07252 * 0.26441 * 17 16 15 34 34 H 1.08002 * 119.92753 * 179.97438 * 18 17 16 35 35 H 1.08007 * 119.85513 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47314 * 59.99960 * 23 21 20 37 37 H 1.09005 * 109.47461 * 179.97438 * 23 21 20 38 38 H 1.09004 * 109.47298 * 300.00062 * 23 21 20 39 39 H 0.96698 * 113.99705 * 60.00517 * 24 21 20 40 40 H 1.07995 * 120.07782 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1808 0.0000 4 6 3.5962 1.1792 -0.0067 5 6 4.3053 2.3983 -0.0127 6 1 3.8736 3.2717 -0.4788 7 6 5.5687 2.4762 0.5855 8 7 6.3745 3.4620 0.2859 9 14 6.1037 1.1723 1.8114 10 1 6.9002 0.1323 1.1120 11 1 6.9322 1.8002 2.8719 12 1 4.9042 0.5478 2.4250 13 6 4.2945 -0.0452 -0.0071 14 6 3.6047 -1.2199 -0.0003 15 6 2.2052 -1.2126 0.0055 16 6 1.4611 -2.4918 0.0118 17 6 0.4421 -2.7055 0.9419 18 6 -0.2478 -3.8997 0.9421 19 6 0.0684 -4.8853 0.0233 20 6 1.0780 -4.6803 -0.9005 21 6 1.4159 -5.7593 -1.8968 22 1 2.4499 -5.6430 -2.2216 23 6 0.4857 -5.6462 -3.1062 24 8 1.2497 -7.0405 -1.2861 25 6 1.7759 -3.4903 -0.9115 26 1 -0.3633 0.0046 1.0277 27 1 -0.3634 0.8877 -0.5177 28 1 -0.3634 -0.8923 -0.5097 29 1 1.6472 2.1161 -0.0004 30 1 7.2497 3.5162 0.7006 31 1 5.3746 -0.0520 -0.0126 32 1 4.1388 -2.1586 -0.0002 33 1 0.1914 -1.9356 1.6566 34 1 -1.0361 -4.0665 1.6613 35 1 -0.4746 -5.8189 0.0279 36 1 0.6124 -4.6689 -3.5720 37 1 0.7304 -6.4263 -3.8271 38 1 -0.5483 -5.7625 -2.7814 39 1 0.3515 -7.2131 -0.9723 40 1 2.5639 -3.3316 -1.6327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242552721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:12 Heat of formation + Delta-G solvation = -27.557582 kcal Electronic energy + Delta-G solvation = -21143.901807 eV Core-core repulsion = 18080.055780 eV Total energy + Delta-G solvation = -3063.846027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.65758 -38.17271 -36.72732 -34.06573 -32.33539 -31.72969 -31.50096 -29.31702 -28.94983 -26.31479 -25.18704 -23.70005 -22.27540 -20.99855 -20.62470 -19.80606 -17.50320 -17.05838 -15.84606 -15.74193 -15.68770 -15.02395 -14.43917 -14.12534 -13.89043 -13.62424 -13.42708 -13.26452 -12.94999 -12.83943 -12.35335 -12.20118 -12.10497 -11.96910 -11.78176 -11.75130 -11.31539 -11.02343 -10.87372 -10.79706 -10.63443 -10.28105 -10.14579 -9.84433 -9.61611 -9.27320 -8.59621 -8.45473 -7.73019 -7.34258 -7.08210 -4.56883 1.50000 1.63890 2.54652 2.65821 3.05733 3.16874 3.26451 3.90346 3.98263 4.33979 4.41600 4.66942 4.95374 5.05189 5.20841 5.22076 5.32320 5.45639 5.54650 5.66911 5.77790 5.79320 5.83114 5.91592 5.96409 6.08629 6.15296 6.27760 6.32326 6.40831 6.47797 6.69020 6.73418 6.74378 6.82795 6.99729 7.09484 7.23898 7.41243 7.47508 7.60542 7.73995 7.80659 8.02299 8.23737 8.56648 8.68453 9.93061 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.004208 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.102044 B = 6652.327014 C = 7062.359470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.029 4.029 3 C -0.211 4.211 4 C 0.101 3.899 5 C -0.437 4.437 6 H 0.092 0.908 7 C 0.084 3.916 8 N -0.799 5.799 9 Si 0.914 3.086 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.243 1.243 13 C -0.244 4.244 14 C -0.049 4.049 15 C -0.205 4.205 16 C 0.019 3.981 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.140 4.140 20 C -0.116 4.116 21 C 0.144 3.856 22 H 0.105 0.895 23 C -0.178 4.178 24 O -0.560 6.560 25 C -0.118 4.118 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.288 0.712 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.371 0.629 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.955 -13.268 -1.082 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.029 4.029 3 C -0.230 4.230 4 C 0.097 3.903 5 C -0.465 4.465 6 H 0.110 0.890 7 C -0.137 4.137 8 N -0.423 5.423 9 Si 0.740 3.260 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.166 1.166 13 C -0.263 4.263 14 C -0.068 4.068 15 C -0.206 4.206 16 C 0.019 3.981 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.158 4.158 20 C -0.117 4.117 21 C 0.085 3.915 22 H 0.123 0.877 23 C -0.236 4.236 24 O -0.366 6.366 25 C -0.136 4.136 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.219 0.781 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.088 -13.104 -1.235 15.995 hybrid contribution -0.101 -0.204 0.641 0.680 sum -9.189 -13.308 -0.595 16.183 Atomic orbital electron populations 1.20839 0.93407 1.01446 1.00982 1.19187 0.93856 0.92605 0.97279 1.20571 0.93807 0.95747 1.12904 1.17766 0.91951 0.92578 0.87971 1.19559 0.99229 0.97083 1.30630 0.88971 1.26246 0.94941 0.96128 0.96349 1.69687 1.07598 1.29960 1.35005 0.86267 0.79982 0.80004 0.79767 1.19503 1.21722 1.16594 1.20711 0.98202 0.92830 1.14575 1.20367 0.92736 0.96644 0.97009 1.17898 0.92243 0.90098 1.20353 1.18904 0.93493 0.93088 0.92610 1.21385 0.96805 0.97069 0.98928 1.20939 0.99829 0.93884 0.98740 1.20631 0.98802 0.99016 0.97349 1.20342 0.97295 0.96007 0.98012 1.20793 1.00189 0.80649 0.89851 0.87711 1.22469 0.99855 1.02954 0.98315 1.86604 1.35159 1.34692 1.80117 1.21115 1.00308 0.92938 0.99275 0.92306 0.92634 0.92294 0.88059 0.90195 0.88151 0.88773 0.86180 0.86678 0.87240 0.91170 0.91764 0.92277 0.78080 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 8.43 36.00 0.30 -1.51 16 2 C -0.03 -0.60 5.83 -104.70 -0.61 -1.21 16 3 C -0.21 -4.80 9.37 -39.28 -0.37 -5.17 16 4 C 0.10 2.50 5.10 -106.80 -0.55 1.95 16 5 C -0.44 -11.55 9.55 -37.86 -0.36 -11.91 16 6 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 7 C 0.08 2.14 5.40 -17.33 -0.09 2.05 16 8 N -0.80 -20.77 13.93 55.55 0.77 -20.00 16 9 Si 0.91 20.53 24.51 -169.99 -4.17 16.37 16 10 H -0.27 -5.89 6.70 56.52 0.38 -5.51 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.24 -5.64 6.87 56.52 0.39 -5.25 16 13 C -0.24 -5.80 7.10 -39.28 -0.28 -6.08 16 14 C -0.05 -1.07 9.43 -39.66 -0.37 -1.44 16 15 C -0.20 -4.19 5.50 -104.63 -0.58 -4.76 16 16 C 0.02 0.33 4.70 -104.88 -0.49 -0.16 16 17 C -0.12 -1.93 7.91 -39.18 -0.31 -2.24 16 18 C -0.12 -1.53 10.03 -39.64 -0.40 -1.93 16 19 C -0.14 -1.75 9.33 -39.47 -0.37 -2.12 16 20 C -0.12 -1.57 5.00 -104.68 -0.52 -2.10 16 21 C 0.14 1.66 3.83 -27.89 -0.11 1.55 16 22 H 0.11 1.22 8.05 -51.93 -0.42 0.81 16 23 C -0.18 -1.71 9.52 37.15 0.35 -1.36 16 24 O -0.56 -6.43 13.13 -35.23 -0.46 -6.90 16 25 C -0.12 -1.88 9.13 -39.18 -0.36 -2.23 16 26 H 0.06 0.88 7.49 -51.93 -0.39 0.49 16 27 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 28 H 0.06 0.93 6.45 -51.93 -0.33 0.60 16 29 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 31 H 0.10 2.38 4.73 -52.48 -0.25 2.13 16 32 H 0.09 1.84 8.03 -52.49 -0.42 1.42 16 33 H 0.12 1.83 6.85 -52.49 -0.36 1.47 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.11 1.04 6.60 -52.48 -0.35 0.70 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.37 2.97 7.38 45.56 0.34 3.31 16 40 H 0.12 1.84 8.04 -52.49 -0.42 1.42 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -27.75 325.99 -8.78 -36.53 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.73 Total: 7.75 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: -5.11 Total: -38.66 kcal Atomic # 7 Polarization: -20.77 SS G_CDS: 0.77 Total: -20.00 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.46 Total: -6.90 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.17 Total: 16.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.75 -8.78 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242552721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.974 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds