Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36270 * 119.94148 * 2 1 4 4 C 1.40909 * 119.87341 * 180.31612 * 3 2 1 5 5 C 1.41035 * 120.11770 * 179.72203 * 4 3 2 6 6 H 1.08004 * 119.99371 * 330.09733 * 5 4 3 7 7 C 1.40008 * 120.00055 * 150.09947 * 5 4 3 8 8 N 1.30802 * 119.99486 * 161.72725 * 7 5 4 9 9 Si 1.86792 * 120.00243 * 341.73056 * 7 5 4 10 10 H 1.48500 * 109.47247 * 95.41705 * 9 7 5 11 11 H 1.48499 * 109.47131 * 215.41405 * 9 7 5 12 12 H 1.48503 * 109.47263 * 335.41532 * 9 7 5 13 13 C 1.40949 * 119.76747 * 359.70096 * 4 3 2 14 14 C 1.36233 * 119.87909 * 359.97438 * 13 4 3 15 15 C 1.39922 * 119.93383 * 179.74226 * 2 1 3 16 16 C 1.47988 * 119.88193 * 359.97438 * 15 2 1 17 17 C 1.39617 * 120.14336 * 309.71888 * 16 15 2 18 18 C 1.37917 * 119.85278 * 179.97438 * 17 16 15 19 19 C 1.38405 * 120.14519 * 0.02562 * 18 17 16 20 20 C 1.38364 * 120.29562 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.93159 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.47045 * 205.00087 * 21 20 19 23 23 C 1.52993 * 109.47200 * 84.99870 * 21 20 19 24 24 O 1.42903 * 109.46916 * 324.99598 * 21 20 19 25 25 C 1.37964 * 120.14240 * 359.97438 * 20 19 18 26 26 H 1.09005 * 109.46974 * 270.25772 * 1 2 3 27 27 H 1.08996 * 109.47348 * 30.25415 * 1 2 3 28 28 H 1.08997 * 109.47809 * 150.26247 * 1 2 3 29 29 H 1.07998 * 120.06165 * 359.97438 * 3 2 1 30 30 H 0.97006 * 119.99614 * 179.97438 * 8 7 5 31 31 H 1.08009 * 120.06254 * 179.97438 * 13 4 3 32 32 H 1.07996 * 119.94279 * 180.02562 * 14 13 4 33 33 H 1.07998 * 120.07252 * 0.26441 * 17 16 15 34 34 H 1.08002 * 119.92753 * 179.97438 * 18 17 16 35 35 H 1.08007 * 119.85513 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47314 * 59.99960 * 23 21 20 37 37 H 1.09005 * 109.47461 * 179.97438 * 23 21 20 38 38 H 1.09004 * 109.47298 * 300.00062 * 23 21 20 39 39 H 0.96698 * 113.99705 * 60.00517 * 24 21 20 40 40 H 1.07995 * 120.07782 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1808 0.0000 4 6 3.5962 1.1792 -0.0067 5 6 4.3053 2.3983 -0.0127 6 1 3.8736 3.2717 -0.4788 7 6 5.5687 2.4762 0.5855 8 7 6.3745 3.4620 0.2859 9 14 6.1037 1.1723 1.8114 10 1 6.9002 0.1323 1.1120 11 1 6.9322 1.8002 2.8719 12 1 4.9042 0.5478 2.4250 13 6 4.2945 -0.0452 -0.0071 14 6 3.6047 -1.2199 -0.0003 15 6 2.2052 -1.2126 0.0055 16 6 1.4611 -2.4918 0.0118 17 6 0.4421 -2.7055 0.9419 18 6 -0.2478 -3.8997 0.9421 19 6 0.0684 -4.8853 0.0233 20 6 1.0780 -4.6803 -0.9005 21 6 1.4159 -5.7593 -1.8968 22 1 2.4499 -5.6430 -2.2216 23 6 0.4857 -5.6462 -3.1062 24 8 1.2497 -7.0405 -1.2861 25 6 1.7759 -3.4903 -0.9115 26 1 -0.3633 0.0046 1.0277 27 1 -0.3634 0.8877 -0.5177 28 1 -0.3634 -0.8923 -0.5097 29 1 1.6472 2.1161 -0.0004 30 1 7.2497 3.5162 0.7006 31 1 5.3746 -0.0520 -0.0126 32 1 4.1388 -2.1586 -0.0002 33 1 0.1914 -1.9356 1.6566 34 1 -1.0361 -4.0665 1.6613 35 1 -0.4746 -5.8189 0.0279 36 1 0.6124 -4.6689 -3.5720 37 1 0.7304 -6.4263 -3.8271 38 1 -0.5483 -5.7625 -2.7814 39 1 0.3515 -7.2131 -0.9723 40 1 2.5639 -3.3316 -1.6327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242552721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -42.883754 kcal Electronic energy + Delta-G solvation = -21144.566400 eV Core-core repulsion = 18080.055780 eV Total energy + Delta-G solvation = -3064.510620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88483 -39.64550 -37.82051 -35.81903 -33.85387 -33.03422 -32.82244 -30.72331 -30.02867 -27.89417 -26.81842 -24.66392 -23.63541 -22.44884 -22.18124 -21.21481 -19.01537 -18.48872 -17.42314 -16.84927 -16.73442 -16.44428 -15.94192 -15.34816 -15.29472 -15.07732 -14.72735 -14.52214 -14.27225 -14.12233 -13.99547 -13.76879 -13.44066 -13.18316 -12.92027 -12.85599 -12.67566 -12.51147 -12.38658 -12.25764 -11.95570 -11.77675 -11.55022 -11.46812 -11.11242 -10.96647 -9.93281 -9.62126 -9.44284 -8.97561 -8.96691 -6.51874 0.21861 0.51877 0.86069 0.92122 1.23280 1.37734 1.44961 2.07937 2.50165 2.91922 3.43907 3.55220 3.69676 3.97446 4.08748 4.20667 4.22562 4.25694 4.32290 4.34617 4.52418 4.60902 4.67742 4.69342 4.84715 4.87353 4.95188 5.00365 5.04022 5.09133 5.14473 5.20701 5.25509 5.32689 5.52980 5.61406 5.66842 5.75740 5.81578 5.90219 6.07370 6.18715 6.20451 6.36033 6.69361 6.79609 6.80977 8.10678 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.004208 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.102044 B = 6652.327014 C = 7062.359470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.036 4.036 3 C -0.224 4.224 4 C 0.080 3.920 5 C -0.480 4.480 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.842 5.842 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.274 1.274 12 H -0.257 1.257 13 C -0.255 4.255 14 C -0.063 4.063 15 C -0.181 4.181 16 C -0.015 4.015 17 C -0.128 4.128 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.116 4.116 21 C 0.147 3.853 22 H 0.097 0.903 23 C -0.173 4.173 24 O -0.570 6.570 25 C -0.127 4.127 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.296 0.704 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.388 0.612 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.657 -17.373 -0.440 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.036 4.036 3 C -0.243 4.243 4 C 0.078 3.922 5 C -0.509 4.509 6 H 0.078 0.922 7 C -0.164 4.164 8 N -0.468 5.468 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.180 1.180 13 C -0.274 4.274 14 C -0.081 4.081 15 C -0.182 4.182 16 C -0.016 4.016 17 C -0.146 4.146 18 C -0.130 4.130 19 C -0.145 4.145 20 C -0.117 4.117 21 C 0.088 3.912 22 H 0.115 0.885 23 C -0.230 4.230 24 O -0.378 6.378 25 C -0.146 4.146 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.238 0.762 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.805 -17.215 -0.597 20.882 hybrid contribution 0.423 0.725 0.381 0.922 sum -11.382 -16.489 -0.215 20.038 Atomic orbital electron populations 1.20843 0.90097 1.02484 1.02533 1.19648 0.96380 0.91728 0.95827 1.20772 0.93332 0.97049 1.13158 1.17911 0.93013 0.92440 0.88845 1.19491 1.00773 0.96948 1.33677 0.92242 1.26803 0.94657 0.97711 0.97210 1.69707 1.08454 1.31753 1.36869 0.85503 0.79217 0.78217 0.78282 1.18549 1.20054 1.18042 1.20782 0.98218 0.93253 1.15193 1.20659 0.93736 0.96668 0.97024 1.18381 0.92110 0.91865 1.15844 1.18794 0.95271 0.92313 0.95172 1.21463 0.96300 0.98370 0.98479 1.21301 0.99846 0.92704 0.99135 1.21134 0.97636 1.00148 0.95594 1.20589 0.97008 0.95504 0.98573 1.20739 1.00388 0.80133 0.89963 0.88496 1.22412 1.00064 1.02952 0.97595 1.86595 1.36772 1.34234 1.80238 1.21145 1.00666 0.93623 0.99122 0.90334 0.91701 0.91135 0.87894 0.89385 0.88643 0.86820 0.86045 0.83433 0.83433 0.91847 0.90789 0.90986 0.76215 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.15 8.43 71.24 0.60 -2.55 16 2 C -0.04 -1.44 5.83 -19.92 -0.12 -1.55 16 3 C -0.22 -10.46 9.37 22.47 0.21 -10.24 16 4 C 0.08 4.18 5.10 -21.28 -0.11 4.07 16 5 C -0.48 -27.20 9.55 23.39 0.22 -26.98 16 6 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 7 C 0.05 2.80 5.40 85.28 0.46 3.26 16 8 N -0.84 -46.27 13.93 21.84 0.30 -45.96 16 9 Si 0.96 43.66 24.51 68.60 1.68 45.34 16 10 H -0.26 -11.23 6.70 99.48 0.67 -10.57 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.26 -12.01 6.87 99.48 0.68 -11.33 16 13 C -0.26 -12.43 7.10 22.47 0.16 -12.27 16 14 C -0.06 -2.70 9.43 22.22 0.21 -2.49 16 15 C -0.18 -7.20 5.50 -19.87 -0.11 -7.31 16 16 C -0.02 -0.50 4.70 -20.03 -0.09 -0.60 16 17 C -0.13 -3.52 7.91 22.53 0.18 -3.35 16 18 C -0.11 -2.38 10.03 22.23 0.22 -2.16 16 19 C -0.13 -2.50 9.33 22.34 0.21 -2.29 16 20 C -0.12 -2.71 5.00 -19.90 -0.10 -2.81 16 21 C 0.15 2.87 3.83 29.84 0.11 2.99 16 22 H 0.10 2.05 8.05 -2.38 -0.02 2.03 16 23 C -0.17 -2.69 9.52 71.98 0.68 -2.01 16 24 O -0.57 -10.71 13.13 -148.98 -1.96 -12.67 16 25 C -0.13 -3.74 9.13 22.53 0.21 -3.53 16 26 H 0.08 2.12 7.49 -2.38 -0.02 2.10 16 27 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 28 H 0.07 2.00 6.45 -2.39 -0.02 1.99 16 29 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 30 H 0.30 14.53 8.30 -92.70 -0.77 13.77 16 31 H 0.10 4.65 4.73 -2.91 -0.01 4.64 16 32 H 0.11 4.36 8.03 -2.91 -0.02 4.34 16 33 H 0.12 3.26 6.85 -2.91 -0.02 3.24 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.15 1.79 6.60 -2.91 -0.02 1.77 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16 38 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 39 H 0.39 4.16 7.38 -74.06 -0.55 3.62 16 40 H 0.11 3.36 8.04 -2.91 -0.02 3.33 16 Total: -1.00 -63.21 325.99 3.42 -59.79 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.44 Total: 23.31 kcal Atomic # 6 Polarization: -72.76 SS G_CDS: 2.95 Total: -69.81 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.30 Total: -45.96 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -1.96 Total: -12.67 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.68 Total: 45.34 kcal Total: -63.21 3.42 -59.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242552721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.906 kcal (2) G-P(sol) polarization free energy of solvation -63.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds