Wall clock time and date at job start Tue Mar 31 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47400 * 2 1 4 4 O 1.42904 * 109.47464 * 239.99549 * 2 1 3 5 5 C 1.50700 * 109.47279 * 119.99540 * 2 1 3 6 6 C 1.38320 * 119.88061 * 149.99848 * 5 2 1 7 7 C 1.38022 * 120.12163 * 180.02562 * 6 5 2 8 8 C 1.39332 * 119.87624 * 0.02562 * 7 6 5 9 9 C 1.48405 * 120.11644 * 179.97438 * 8 7 6 10 10 C 1.39725 * 120.00624 * 359.97438 * 9 8 7 11 11 C 1.38386 * 120.38649 * 179.74627 * 10 9 8 12 12 C 1.37727 * 120.37527 * 0.23313 * 11 10 9 13 13 C 1.40753 * 119.99073 * 0.02562 * 12 11 10 14 14 C 1.41413 * 120.18756 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00398 * 204.50817 * 14 13 12 16 16 C 1.39937 * 120.00066 * 24.50969 * 14 13 12 17 17 N 1.30829 * 119.99941 * 17.89255 * 16 14 13 18 18 Si 1.86800 * 120.00252 * 197.89204 * 16 14 13 19 19 H 1.48500 * 109.47213 * 59.99583 * 18 16 14 20 20 H 1.48500 * 109.47074 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46790 * 300.00079 * 18 16 14 22 22 C 1.38734 * 120.00100 * 180.25307 * 9 8 7 23 23 C 1.39328 * 119.76019 * 0.24917 * 8 7 6 24 24 C 1.38024 * 119.87746 * 359.51822 * 23 8 7 25 25 H 1.09004 * 109.47227 * 300.00446 * 1 2 3 26 26 H 1.09004 * 109.47119 * 60.00125 * 1 2 3 27 27 H 1.09003 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47322 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46883 * 300.00020 * 3 2 1 30 30 H 1.08990 * 109.47235 * 59.99471 * 3 2 1 31 31 H 0.96699 * 114.00039 * 300.00221 * 4 2 1 32 32 H 1.08002 * 119.93987 * 359.97438 * 6 5 2 33 33 H 1.07993 * 120.06287 * 180.02562 * 7 6 5 34 34 H 1.08008 * 119.80536 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.81327 * 180.24996 * 11 10 9 36 36 H 1.07996 * 120.00106 * 180.02562 * 12 11 10 37 37 H 0.97005 * 120.00221 * 180.02562 * 17 16 14 38 38 H 1.08008 * 120.18420 * 359.97438 * 22 9 8 39 39 H 1.08001 * 120.05888 * 179.75350 * 23 8 7 40 40 H 1.08001 * 119.93828 * 180.23106 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7103 1.2305 6 6 3.2413 -1.3814 1.1935 7 6 3.7059 -2.0340 2.3174 8 6 2.9544 -2.0165 3.4906 9 6 3.4486 -2.7169 4.7020 10 6 4.6692 -3.3961 4.6674 11 6 5.1400 -4.0475 5.7939 12 6 4.4084 -4.0378 6.9608 13 6 3.1742 -3.3631 7.0118 14 6 2.4193 -3.3509 8.2076 15 1 1.3502 -3.2028 8.1698 16 6 3.0576 -3.5308 9.4398 17 7 4.3513 -3.3617 9.5372 18 14 2.0627 -4.0125 10.9456 19 1 1.3877 -5.3118 10.6981 20 1 2.9670 -4.1389 12.1167 21 1 1.0422 -2.9688 11.2191 22 6 2.6959 -2.7023 5.8673 23 6 1.7346 -1.3438 3.5206 24 6 1.2818 -0.6904 2.3922 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8898 31 1 1.7211 -1.5953 -1.2328 32 1 3.8224 -1.3954 0.2832 33 1 4.6501 -2.5573 2.2876 34 1 5.2508 -3.4089 3.7574 35 1 6.0866 -4.5662 5.7580 36 1 4.7818 -4.5478 7.8365 37 1 4.7939 -3.4868 10.3913 38 1 1.7500 -2.1818 5.8963 39 1 1.1463 -1.3305 4.4262 40 1 0.3382 -0.1655 2.4154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242624980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:10 Heat of formation + Delta-G solvation = -22.381540 kcal Electronic energy + Delta-G solvation = -20799.348603 eV Core-core repulsion = 17735.727026 eV Total energy + Delta-G solvation = -3063.621577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77032 -37.95871 -36.64752 -33.86689 -32.80712 -31.05542 -30.56996 -29.76035 -27.56531 -27.46757 -25.35093 -23.20649 -22.41970 -20.80014 -20.16688 -19.71375 -17.70224 -17.19879 -15.83237 -15.37811 -15.11897 -14.88625 -14.66920 -14.36130 -13.58744 -13.34071 -13.26560 -13.04312 -12.77075 -12.54251 -12.40985 -12.26408 -12.21746 -11.79495 -11.61927 -11.49203 -11.31507 -11.11625 -10.94970 -10.77234 -10.50805 -10.38588 -10.02033 -9.73423 -9.40931 -9.24472 -8.69691 -8.60022 -7.54677 -6.99657 -6.79552 -4.41108 1.38848 1.76406 2.76948 3.00896 3.04376 3.06746 3.20075 3.89982 4.11321 4.19499 4.64436 4.65697 4.82375 4.99563 5.22747 5.31612 5.45179 5.48538 5.63119 5.66689 5.67787 5.70417 5.85148 5.86774 6.02987 6.11441 6.17751 6.22400 6.40844 6.47864 6.72641 6.77009 6.86583 6.88990 6.99129 7.16731 7.32785 7.36300 7.52865 7.56670 7.80504 7.96057 8.00880 8.21238 8.56197 8.83501 8.89256 10.15094 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.003411 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.153132 B = 8206.527528 C = 8854.016310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.173 3.827 3 C -0.133 4.133 4 O -0.559 6.559 5 C -0.143 4.143 6 C -0.103 4.103 7 C -0.124 4.124 8 C -0.006 4.006 9 C -0.045 4.045 10 C -0.220 4.220 11 C -0.108 4.108 12 C -0.154 4.154 13 C 0.107 3.893 14 C -0.466 4.466 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.795 5.795 18 Si 0.908 3.092 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.202 4.202 23 C -0.121 4.121 24 C -0.110 4.110 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.377 0.623 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.281 0.719 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 4.355 -12.752 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.132 3.868 3 C -0.190 4.190 4 O -0.365 6.365 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.141 4.141 8 C -0.006 4.006 9 C -0.045 4.045 10 C -0.239 4.239 11 C -0.127 4.127 12 C -0.174 4.174 13 C 0.104 3.896 14 C -0.495 4.495 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.222 4.222 23 C -0.139 4.139 24 C -0.128 4.128 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.224 0.776 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.144 0.856 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.273 4.954 -12.676 14.265 hybrid contribution -0.549 -0.740 1.020 1.375 sum -4.822 4.214 -11.656 13.300 Atomic orbital electron populations 1.22537 0.95535 1.02681 1.02644 1.19915 0.92201 0.92254 0.82405 1.21736 1.02177 0.93013 1.02123 1.86505 1.77410 1.29068 1.43493 1.20325 0.96509 1.01699 0.95834 1.20827 0.95476 0.97560 0.98231 1.21282 1.00191 1.00260 0.92413 1.19211 0.93281 0.94688 0.93384 1.18341 0.95516 0.98898 0.91738 1.20437 0.97804 1.07757 0.97912 1.20641 0.98360 0.99902 0.93780 1.21441 0.97126 1.02071 0.96744 1.17535 0.91874 0.88300 0.91848 1.19523 0.95502 1.44222 0.90272 0.90443 1.25893 0.94983 0.92394 1.00833 1.69812 1.10197 1.34685 1.27310 0.86370 0.80315 0.80303 0.79757 1.18803 1.20331 1.18997 1.21093 1.00988 1.06207 0.93878 1.21323 0.96302 0.97960 0.98346 1.20930 0.99398 0.99877 0.92622 0.91176 0.91870 0.92088 0.91802 0.92006 0.91078 0.77599 0.86072 0.85875 0.89032 0.89132 0.86305 0.90772 0.88496 0.85588 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.11 37.16 0.30 -1.34 16 2 C 0.17 1.93 1.23 -91.77 -0.11 1.81 16 3 C -0.13 -1.41 8.83 37.16 0.33 -1.08 16 4 O -0.56 -6.24 11.95 -35.23 -0.42 -6.66 16 5 C -0.14 -1.94 4.81 -104.56 -0.50 -2.44 16 6 C -0.10 -1.50 9.33 -39.63 -0.37 -1.87 16 7 C -0.12 -2.08 9.43 -39.25 -0.37 -2.45 16 8 C -0.01 -0.11 5.88 -104.90 -0.62 -0.72 16 9 C -0.04 -1.01 5.87 -104.97 -0.62 -1.62 16 10 C -0.22 -4.88 9.44 -38.97 -0.37 -5.25 16 11 C -0.11 -2.52 10.01 -39.71 -0.40 -2.92 16 12 C -0.15 -3.97 8.69 -38.82 -0.34 -4.31 16 13 C 0.11 2.81 5.57 -106.87 -0.60 2.22 16 14 C -0.47 -12.19 9.05 -37.74 -0.34 -12.53 16 15 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 16 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 17 N -0.79 -20.35 10.96 55.55 0.61 -19.74 16 18 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 C -0.20 -4.90 9.17 -38.53 -0.35 -5.25 16 23 C -0.12 -2.08 9.42 -39.25 -0.37 -2.45 16 24 C -0.11 -1.57 9.12 -39.63 -0.36 -1.94 16 25 H 0.07 0.61 6.50 -51.93 -0.34 0.28 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.38 3.16 9.04 45.56 0.41 3.57 16 32 H 0.12 1.58 7.47 -52.49 -0.39 1.19 16 33 H 0.12 1.97 6.19 -52.49 -0.32 1.65 16 34 H 0.09 1.79 6.18 -52.48 -0.32 1.47 16 35 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.12 3.14 6.15 -52.49 -0.32 2.82 16 37 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 38 H 0.10 2.19 6.19 -52.48 -0.33 1.87 16 39 H 0.13 2.14 6.20 -52.49 -0.33 1.81 16 40 H 0.12 1.40 6.15 -52.49 -0.32 1.07 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -28.01 327.97 -9.42 -37.43 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -4.35 Total: 10.97 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: -5.17 Total: -40.34 kcal Atomic # 7 Polarization: -20.35 SS G_CDS: 0.61 Total: -19.74 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.42 Total: -6.66 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.01 -9.42 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242624980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.047 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds