Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36274 * 120.06193 * 2 1 4 4 C 1.39917 * 120.12120 * 180.02562 * 3 2 1 5 5 C 1.47992 * 119.87925 * 179.97438 * 4 3 2 6 6 C 1.39609 * 120.14201 * 359.72096 * 5 4 3 7 7 C 1.37934 * 119.84959 * 179.76882 * 6 5 4 8 8 C 1.38389 * 120.14625 * 0.51226 * 7 6 5 9 9 C 1.50703 * 119.85574 * 179.76528 * 8 7 6 10 10 H 1.09004 * 109.46861 * 159.97980 * 9 8 7 11 11 C 1.53001 * 109.47067 * 279.97939 * 9 8 7 12 12 O 1.42901 * 109.46993 * 39.97967 * 9 8 7 13 13 C 1.38393 * 120.29082 * 359.74303 * 8 7 6 14 14 C 1.37937 * 120.14696 * 359.97438 * 13 8 7 15 15 C 1.39950 * 120.24031 * 359.95548 * 4 3 2 16 16 C 1.36238 * 120.11819 * 359.75755 * 15 4 3 17 17 C 1.40918 * 120.06245 * 180.02562 * 2 1 3 18 18 C 1.41029 * 120.11534 * 359.97438 * 17 2 1 19 19 H 1.08003 * 120.00168 * 334.49312 * 18 17 2 20 20 C 1.40008 * 119.99749 * 154.49376 * 18 17 2 21 21 N 1.30802 * 120.00504 * 334.60425 * 20 18 17 22 22 Si 1.86806 * 119.99962 * 154.60362 * 20 18 17 23 23 H 1.48505 * 109.47076 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.46936 * 300.00319 * 22 20 18 25 25 H 1.48504 * 109.47071 * 59.99956 * 22 20 18 26 26 H 1.09001 * 109.47070 * 269.97954 * 1 2 3 27 27 H 1.08998 * 109.47133 * 29.98031 * 1 2 3 28 28 H 1.08998 * 109.46971 * 149.97959 * 1 2 3 29 29 H 1.08004 * 119.93715 * 0.02562 * 3 2 1 30 30 H 1.07996 * 120.07427 * 0.02562 * 6 5 4 31 31 H 1.07997 * 119.92826 * 180.27447 * 7 6 5 32 32 H 1.08992 * 109.47161 * 59.99849 * 11 9 8 33 33 H 1.08999 * 109.46690 * 180.02562 * 11 9 8 34 34 H 1.09001 * 109.46516 * 299.99780 * 11 9 8 35 35 H 0.96703 * 113.99614 * 299.99392 * 12 9 8 36 36 H 1.08003 * 119.92450 * 179.97438 * 13 8 7 37 37 H 1.07995 * 120.07733 * 180.02562 * 14 13 8 38 38 H 1.07996 * 119.94327 * 180.02562 * 15 4 3 39 39 H 1.08003 * 120.05794 * 180.27441 * 16 15 4 40 40 H 0.97003 * 119.98991 * 354.17155 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5888 1.1809 -0.0005 5 6 4.3247 2.4648 -0.0011 6 6 3.6259 3.6734 -0.0070 7 6 4.3179 4.8666 -0.0027 8 6 5.7018 4.8675 -0.0032 9 6 6.4512 6.1749 -0.0038 10 1 7.4697 6.0100 0.3476 11 6 6.4873 6.7414 -1.4247 12 8 5.7927 7.1018 0.8619 13 6 6.4005 3.6729 -0.0028 14 6 5.7207 2.4727 -0.0012 15 6 4.2949 -0.0275 -0.0001 16 6 3.6223 -1.2122 0.0058 17 6 2.2129 -1.2196 -0.0005 18 6 1.5115 -2.4431 -0.0005 19 1 0.5108 -2.4920 0.4026 20 6 2.1127 -3.5946 -0.5232 21 7 3.0531 -3.4891 -1.4262 22 14 1.5717 -5.2816 0.0692 23 1 2.3570 -6.3282 -0.6332 24 1 1.8013 -5.3895 1.5323 25 1 0.1271 -5.4681 -0.2203 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6496 2.1148 0.0004 30 1 2.5459 3.6741 -0.0107 31 1 3.7785 5.8023 -0.0027 32 1 5.4689 6.9062 -1.7761 33 1 7.0298 7.6868 -1.4251 34 1 6.9896 6.0343 -2.0849 35 1 4.8798 7.2960 0.6087 36 1 7.4805 3.6805 -0.0036 37 1 6.2671 1.5412 -0.0004 38 1 5.3748 -0.0207 -0.0001 39 1 4.1682 -2.1442 0.0105 40 1 3.2754 -2.6201 -1.7955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242648908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -35.379807 kcal Electronic energy + Delta-G solvation = -20789.183149 eV Core-core repulsion = 17724.997924 eV Total energy + Delta-G solvation = -3064.185225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.48344 -38.17616 -36.73529 -34.23626 -32.47671 -31.51670 -30.51236 -29.96814 -28.16081 -26.33561 -25.04849 -23.38281 -22.45013 -21.30641 -20.28625 -19.48707 -17.93232 -17.42880 -15.72780 -15.66556 -15.07851 -14.62211 -14.58819 -14.11150 -13.69201 -13.49681 -13.24341 -13.11541 -12.95904 -12.81056 -12.25414 -12.14759 -12.09346 -11.85987 -11.67543 -11.36810 -11.25566 -11.06444 -10.77505 -10.67161 -10.57256 -10.50183 -10.03691 -9.64508 -9.53802 -9.21882 -8.60886 -8.58227 -7.76259 -7.42192 -7.12986 -4.56314 1.44436 1.80622 2.72704 2.80740 3.05322 3.16659 3.25575 3.86286 4.08010 4.39902 4.58073 4.75669 4.99598 5.10200 5.25350 5.27889 5.35935 5.56266 5.59958 5.69478 5.81841 5.93632 5.95405 6.02347 6.08249 6.21910 6.37712 6.41716 6.50754 6.51654 6.72760 6.76330 6.86360 6.90335 6.97984 7.10519 7.25308 7.37661 7.53230 7.57502 7.62419 7.74032 7.86508 7.99927 8.14442 8.56197 8.68392 9.81660 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036902 B = 0.003360 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.591754 B = 8330.686443 C = 8839.299766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.204 4.204 3 C -0.051 4.051 4 C -0.217 4.217 5 C 0.029 3.971 6 C -0.145 4.145 7 C -0.100 4.100 8 C -0.164 4.164 9 C 0.150 3.850 10 H 0.100 0.900 11 C -0.179 4.179 12 O -0.562 6.562 13 C -0.098 4.098 14 C -0.145 4.145 15 C -0.058 4.058 16 C -0.224 4.224 17 C 0.105 3.895 18 C -0.495 4.495 19 H 0.083 0.917 20 C 0.035 3.965 21 N -0.779 5.779 22 Si 1.065 2.935 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.273 1.273 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.372 0.628 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 10.460 0.239 10.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.205 4.205 3 C -0.069 4.069 4 C -0.218 4.218 5 C 0.029 3.971 6 C -0.163 4.163 7 C -0.118 4.118 8 C -0.164 4.164 9 C 0.091 3.909 10 H 0.118 0.882 11 C -0.236 4.236 12 O -0.368 6.368 13 C -0.117 4.117 14 C -0.163 4.163 15 C -0.076 4.076 16 C -0.243 4.243 17 C 0.102 3.898 18 C -0.521 4.521 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.401 5.401 22 Si 0.888 3.112 23 H -0.196 1.196 24 H -0.198 1.198 25 H -0.199 1.199 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.220 0.780 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.480 8.815 0.330 9.483 hybrid contribution -0.755 1.617 -0.226 1.799 sum 2.725 10.433 0.105 10.783 Atomic orbital electron populations 1.20406 0.93238 1.00675 0.99862 1.19396 0.94587 0.92841 1.13657 1.20304 0.92862 0.96130 0.97612 1.17997 0.92504 0.90575 1.20684 1.19002 0.92494 0.92905 0.92748 1.21123 0.99610 0.91697 1.03869 1.20576 0.93323 0.97397 1.00549 1.20242 0.94270 0.95182 1.06754 1.20688 0.95577 0.85127 0.89502 0.88224 1.22485 1.02629 1.01399 0.97106 1.86576 1.30536 1.64448 1.55242 1.20742 0.98898 0.91941 1.00070 1.21177 0.93942 0.97523 1.03666 1.20455 0.97393 0.92320 0.97425 1.20840 0.94387 0.96655 1.12465 1.17640 0.91674 0.92304 0.88214 1.20741 1.03226 0.93754 1.34400 0.89876 1.27186 0.92756 1.05796 0.93106 1.70447 1.21674 1.31961 1.16018 0.83632 0.77057 0.73204 0.77355 1.19645 1.19762 1.19875 0.93850 0.94192 0.92053 0.88811 0.86367 0.87318 0.92270 0.92000 0.91438 0.78009 0.86895 0.86271 0.88820 0.87555 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.39 36.00 0.34 -1.35 16 2 C -0.20 -4.72 5.90 -104.32 -0.62 -5.33 16 3 C -0.05 -1.11 9.00 -39.66 -0.36 -1.47 16 4 C -0.22 -4.73 5.90 -104.63 -0.62 -5.35 16 5 C 0.03 0.55 5.88 -104.88 -0.62 -0.07 16 6 C -0.14 -2.47 9.43 -39.18 -0.37 -2.84 16 7 C -0.10 -1.46 9.30 -39.64 -0.37 -1.83 16 8 C -0.16 -2.33 4.98 -104.51 -0.52 -2.85 16 9 C 0.15 1.75 3.82 -27.88 -0.11 1.64 16 10 H 0.10 1.11 8.00 -51.93 -0.42 0.70 16 11 C -0.18 -1.75 9.51 37.16 0.35 -1.39 16 12 O -0.56 -6.80 13.19 -35.23 -0.46 -7.26 16 13 C -0.10 -1.48 9.65 -39.63 -0.38 -1.86 16 14 C -0.15 -2.53 9.43 -39.18 -0.37 -2.90 16 15 C -0.06 -1.30 9.36 -39.66 -0.37 -1.67 16 16 C -0.22 -5.51 7.89 -39.28 -0.31 -5.82 16 17 C 0.11 2.63 5.29 -106.80 -0.57 2.07 16 18 C -0.49 -12.24 8.05 -37.86 -0.30 -12.54 16 19 H 0.08 1.98 6.91 -52.48 -0.36 1.62 16 20 C 0.04 0.85 4.93 -17.33 -0.09 0.76 16 21 N -0.78 -19.59 12.32 55.55 0.68 -18.90 16 22 Si 1.06 20.21 30.00 -169.99 -5.10 15.11 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 25 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.06 1.24 6.76 -51.93 -0.35 0.89 16 29 H 0.09 1.82 6.18 -52.48 -0.32 1.49 16 30 H 0.12 1.91 6.18 -52.49 -0.32 1.58 16 31 H 0.11 1.24 6.77 -52.49 -0.36 0.89 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.37 3.34 7.49 45.56 0.34 3.68 16 36 H 0.11 1.41 8.03 -52.48 -0.42 0.99 16 37 H 0.12 2.00 6.18 -52.49 -0.32 1.67 16 38 H 0.09 1.90 6.18 -52.49 -0.32 1.58 16 39 H 0.11 2.68 6.50 -52.48 -0.34 2.34 16 40 H 0.30 7.85 6.70 -40.82 -0.27 7.57 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -27.07 327.05 -9.60 -36.67 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.38 Total: 12.27 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: -5.27 Total: -42.81 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.68 Total: -18.90 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.46 Total: -7.26 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.10 Total: 15.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.07 -9.60 -36.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242648908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.288 kcal (2) G-P(sol) polarization free energy of solvation -27.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds