Wall clock time and date at job start Tue Mar 31 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36268 * 120.06420 * 2 1 4 4 C 1.39914 * 120.12495 * 179.97438 * 3 2 1 5 5 C 1.47990 * 119.88445 * 179.97438 * 4 3 2 6 6 C 1.39603 * 120.14100 * 359.72389 * 5 4 3 7 7 C 1.37944 * 119.85058 * 179.74230 * 6 5 4 8 8 C 1.38381 * 120.14576 * 0.51493 * 7 6 5 9 9 C 1.50697 * 119.85611 * 179.74051 * 8 7 6 10 10 H 1.09007 * 109.47429 * 205.02495 * 9 8 7 11 11 C 1.52994 * 109.47119 * 85.02224 * 9 8 7 12 12 O 1.42903 * 109.46958 * 325.01884 * 9 8 7 13 13 C 1.38394 * 120.28998 * 359.76251 * 8 7 6 14 14 C 1.37932 * 120.14703 * 359.97438 * 13 8 7 15 15 C 1.39958 * 120.23722 * 359.97438 * 4 3 2 16 16 C 1.36235 * 120.11897 * 359.72960 * 15 4 3 17 17 C 1.40913 * 120.06058 * 179.97438 * 2 1 3 18 18 C 1.41030 * 120.11691 * 359.97438 * 17 2 1 19 19 H 1.07995 * 120.00138 * 26.82366 * 18 17 2 20 20 C 1.40014 * 119.99933 * 206.82102 * 18 17 2 21 21 N 1.30798 * 120.00179 * 16.40979 * 20 18 17 22 22 Si 1.86800 * 119.99768 * 196.41272 * 20 18 17 23 23 H 1.48495 * 109.47009 * 265.18478 * 22 20 18 24 24 H 1.48496 * 109.47345 * 25.18696 * 22 20 18 25 25 H 1.48504 * 109.46904 * 145.18867 * 22 20 18 26 26 H 1.09002 * 109.46859 * 270.02086 * 1 2 3 27 27 H 1.09001 * 109.46631 * 30.01727 * 1 2 3 28 28 H 1.08998 * 109.46893 * 150.02202 * 1 2 3 29 29 H 1.08002 * 119.94042 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.07606 * 359.97438 * 6 5 4 31 31 H 1.08005 * 119.92472 * 180.25236 * 7 6 5 32 32 H 1.08992 * 109.47323 * 60.00068 * 11 9 8 33 33 H 1.09000 * 109.47287 * 180.02562 * 11 9 8 34 34 H 1.08999 * 109.47053 * 299.99787 * 11 9 8 35 35 H 0.96701 * 113.99725 * 60.00416 * 12 9 8 36 36 H 1.08002 * 119.92784 * 179.97438 * 13 8 7 37 37 H 1.08001 * 120.07376 * 180.02562 * 14 13 8 38 38 H 1.07997 * 119.93819 * 180.02562 * 15 4 3 39 39 H 1.08003 * 120.06221 * 180.27639 * 16 15 4 40 40 H 0.96996 * 119.99961 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1897 1.1793 0.0000 4 6 3.5888 1.1808 0.0005 5 6 4.3248 2.4647 0.0000 6 6 3.6261 3.6733 -0.0069 7 6 4.3181 4.8666 -0.0021 8 6 5.7020 4.8674 -0.0011 9 6 6.4514 6.1748 -0.0017 10 1 7.4403 6.0266 -0.4356 11 6 6.5954 6.6806 1.4350 12 8 5.7311 7.1363 -0.7754 13 6 6.4007 3.6728 -0.0001 14 6 5.7208 2.4726 0.0005 15 6 4.2949 -0.0276 0.0016 16 6 3.6223 -1.2123 0.0077 17 6 2.2129 -1.2196 0.0005 18 6 1.5115 -2.4431 0.0016 19 1 0.5187 -2.4968 -0.4200 20 6 2.1024 -3.5883 0.5493 21 7 3.1419 -3.4757 1.3351 22 14 1.4061 -5.2768 0.1576 23 1 0.4583 -5.6815 1.2267 24 1 0.6928 -5.2284 -1.1439 25 1 2.5137 -6.2628 0.0787 26 1 -0.3633 0.0004 1.0277 27 1 -0.3632 0.8899 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6497 2.1147 -0.0004 30 1 2.5461 3.6741 -0.0123 31 1 3.7787 5.8023 -0.0033 32 1 7.1448 5.9472 2.0251 33 1 7.1371 7.6265 1.4346 34 1 5.6066 6.8289 1.8688 35 1 4.8402 7.3183 -0.4463 36 1 7.4807 3.6802 0.0002 37 1 6.2673 1.5411 0.0017 38 1 5.3749 -0.0208 0.0025 39 1 4.1681 -2.1443 0.0131 40 1 3.5510 -4.2690 1.7148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242648909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:59 Heat of formation + Delta-G solvation = -27.926716 kcal Electronic energy + Delta-G solvation = -20747.379495 eV Core-core repulsion = 17683.517461 eV Total energy + Delta-G solvation = -3063.862034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.42537 -38.00677 -36.64125 -33.99374 -32.42924 -31.44621 -30.43370 -30.04349 -28.30032 -26.31596 -25.03154 -23.30850 -22.41584 -21.25098 -20.22570 -19.21657 -17.50715 -17.29669 -15.77608 -15.60322 -15.25640 -14.90182 -14.26878 -14.14953 -13.44053 -13.39561 -13.20697 -13.00777 -12.93678 -12.73453 -12.27359 -12.09882 -11.96531 -11.85873 -11.53073 -11.28626 -11.19654 -11.04349 -10.86601 -10.72220 -10.56991 -10.47719 -10.01787 -9.62761 -9.43392 -9.33352 -8.52836 -8.49533 -7.50977 -7.07854 -6.90284 -4.45621 1.50279 1.86025 2.72476 2.96661 2.99575 3.01155 3.13157 3.78109 4.14740 4.42629 4.65613 4.79785 5.04825 5.13294 5.29996 5.32668 5.53537 5.60571 5.66242 5.73573 5.88223 5.97719 6.05030 6.12269 6.16470 6.29927 6.45451 6.49110 6.60847 6.63730 6.77669 6.85460 6.91128 6.95258 7.01100 7.14964 7.34513 7.45045 7.53166 7.56125 7.81782 7.89898 8.02405 8.13594 8.45596 8.68850 8.80933 9.96992 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.037323 B = 0.003346 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.018855 B = 8366.604351 C = 8901.158496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.201 4.201 3 C -0.061 4.061 4 C -0.204 4.204 5 C 0.027 3.973 6 C -0.144 4.144 7 C -0.102 4.102 8 C -0.164 4.164 9 C 0.150 3.850 10 H 0.100 0.900 11 C -0.179 4.179 12 O -0.562 6.562 13 C -0.100 4.100 14 C -0.143 4.143 15 C -0.078 4.078 16 C -0.169 4.169 17 C 0.124 3.876 18 C -0.444 4.444 19 H 0.086 0.914 20 C 0.073 3.927 21 N -0.780 5.780 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.258 1.258 25 H -0.274 1.274 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.372 0.628 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 9.960 -0.094 10.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.202 4.202 3 C -0.079 4.079 4 C -0.205 4.205 5 C 0.027 3.973 6 C -0.162 4.162 7 C -0.120 4.120 8 C -0.164 4.164 9 C 0.091 3.909 10 H 0.118 0.882 11 C -0.236 4.236 12 O -0.368 6.368 13 C -0.118 4.118 14 C -0.161 4.161 15 C -0.096 4.096 16 C -0.188 4.188 17 C 0.121 3.879 18 C -0.472 4.472 19 H 0.103 0.897 20 C -0.147 4.147 21 N -0.403 5.403 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.182 1.182 25 H -0.198 1.198 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.220 0.780 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.110 0.890 39 H 0.136 0.864 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.787 9.799 -0.280 10.509 hybrid contribution -0.669 -0.930 0.412 1.218 sum 3.118 8.869 0.132 9.402 Atomic orbital electron populations 1.20405 0.93374 1.00200 1.00098 1.19459 0.94533 0.93026 1.13218 1.20263 0.92829 0.96098 0.98699 1.18066 0.92534 0.90597 1.19328 1.19042 0.92516 0.92996 0.92735 1.21140 0.99647 0.91690 1.03710 1.20574 0.93315 0.97405 1.00671 1.20236 0.94300 0.95145 1.06759 1.20680 0.94618 0.84697 0.90888 0.88218 1.22481 1.02615 1.01565 0.96944 1.86574 1.31601 1.62030 1.56637 1.20723 0.98869 0.91953 1.00291 1.21193 0.93982 0.97517 1.03415 1.20524 0.97381 0.92472 0.99236 1.20968 0.94469 0.96602 1.06785 1.17590 0.91906 0.91729 0.86628 1.19736 1.02436 0.92656 1.32414 0.89653 1.26023 0.94132 1.01740 0.92756 1.69810 1.17880 1.32327 1.20325 0.86262 0.79572 0.80554 0.80260 1.19359 1.18213 1.19844 0.93555 0.94386 0.92335 0.88947 0.86322 0.87329 0.91427 0.92036 0.92272 0.77992 0.86946 0.86188 0.89021 0.86425 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 9.61 36.01 0.35 -1.32 16 2 C -0.20 -4.68 5.90 -104.32 -0.62 -5.30 16 3 C -0.06 -1.34 9.00 -39.66 -0.36 -1.69 16 4 C -0.20 -4.51 5.90 -104.63 -0.62 -5.13 16 5 C 0.03 0.53 5.88 -104.88 -0.62 -0.09 16 6 C -0.14 -2.48 9.43 -39.18 -0.37 -2.85 16 7 C -0.10 -1.50 9.31 -39.64 -0.37 -1.87 16 8 C -0.16 -2.35 5.01 -104.51 -0.52 -2.87 16 9 C 0.15 1.77 3.83 -27.89 -0.11 1.66 16 10 H 0.10 1.12 8.05 -51.92 -0.42 0.71 16 11 C -0.18 -1.77 9.52 37.15 0.35 -1.41 16 12 O -0.56 -6.83 13.13 -35.23 -0.46 -7.29 16 13 C -0.10 -1.52 9.66 -39.64 -0.38 -1.90 16 14 C -0.14 -2.52 9.43 -39.18 -0.37 -2.89 16 15 C -0.08 -1.79 9.36 -39.66 -0.37 -2.16 16 16 C -0.17 -4.23 8.61 -39.28 -0.34 -4.57 16 17 C 0.12 3.15 5.56 -106.80 -0.59 2.56 16 18 C -0.44 -11.02 8.43 -37.86 -0.32 -11.34 16 19 H 0.09 2.01 6.27 -52.49 -0.33 1.68 16 20 C 0.07 1.73 5.15 -17.33 -0.09 1.64 16 21 N -0.78 -19.10 10.99 55.55 0.61 -18.49 16 22 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 25 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.06 1.15 6.25 -51.93 -0.32 0.82 16 29 H 0.09 1.81 6.18 -52.49 -0.32 1.48 16 30 H 0.12 1.93 6.18 -52.49 -0.32 1.61 16 31 H 0.11 1.26 6.60 -52.48 -0.35 0.92 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.37 3.36 7.38 45.56 0.34 3.70 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.12 2.03 6.18 -52.49 -0.32 1.71 16 38 H 0.09 1.90 6.18 -52.49 -0.32 1.57 16 39 H 0.12 3.02 6.24 -52.48 -0.33 2.69 16 40 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -27.20 327.11 -9.67 -36.86 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.37 Total: 10.98 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: -5.34 Total: -39.53 kcal Atomic # 7 Polarization: -19.10 SS G_CDS: 0.61 Total: -18.49 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.46 Total: -7.29 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.20 -9.67 -36.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242648909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.936 kcal (2) G-P(sol) polarization free energy of solvation -27.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds