Wall clock time and date at job start Tue Mar 31 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36273 * 119.94176 * 2 1 4 4 C 1.40911 * 119.87705 * 179.77072 * 3 2 1 5 5 C 1.41029 * 120.11862 * 180.27392 * 4 3 2 6 6 H 1.07992 * 120.00279 * 204.82208 * 5 4 3 7 7 C 1.40021 * 119.99458 * 24.82525 * 5 4 3 8 8 N 1.30784 * 120.00248 * 17.80263 * 7 5 4 9 9 Si 1.86799 * 119.99494 * 197.80380 * 7 5 4 10 10 H 1.48503 * 109.47325 * 59.99933 * 9 7 5 11 11 H 1.48504 * 109.46791 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99749 * 9 7 5 13 13 C 1.40951 * 119.76625 * 0.52450 * 4 3 2 14 14 C 1.36240 * 119.87530 * 359.47815 * 13 4 3 15 15 C 1.39927 * 119.94000 * 180.02562 * 2 1 3 16 16 C 1.47986 * 119.87763 * 359.97438 * 15 2 1 17 17 C 1.39607 * 120.14376 * 309.70276 * 16 15 2 18 18 C 1.37943 * 119.85186 * 179.77440 * 17 16 15 19 19 C 1.38392 * 120.14271 * 0.48194 * 18 17 16 20 20 C 1.50699 * 119.84998 * 179.76764 * 19 18 17 21 21 H 1.09000 * 109.46836 * 160.02074 * 20 19 18 22 22 C 1.52999 * 109.47053 * 280.02201 * 20 19 18 23 23 O 1.42902 * 109.47146 * 40.02309 * 20 19 18 24 24 C 1.38388 * 120.29195 * 359.79076 * 19 18 17 25 25 C 1.37936 * 120.14674 * 359.95667 * 24 19 18 26 26 H 1.09005 * 109.46874 * 269.97485 * 1 2 3 27 27 H 1.09000 * 109.47072 * 29.97593 * 1 2 3 28 28 H 1.09003 * 109.47157 * 149.98074 * 1 2 3 29 29 H 1.07996 * 120.05751 * 359.97438 * 3 2 1 30 30 H 0.97005 * 120.00112 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.06087 * 179.74974 * 13 4 3 32 32 H 1.08003 * 119.93681 * 180.27191 * 14 13 4 33 33 H 1.07996 * 120.07153 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.92493 * 180.27166 * 18 17 16 35 35 H 1.08991 * 109.47172 * 60.00278 * 22 20 19 36 36 H 1.09002 * 109.46552 * 180.02562 * 22 20 19 37 37 H 1.08996 * 109.47250 * 299.99673 * 22 20 19 38 38 H 0.96693 * 114.00042 * 299.99860 * 23 20 19 39 39 H 1.08000 * 119.92321 * 179.97438 * 24 19 18 40 40 H 1.07993 * 120.07341 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1808 0.0000 4 6 3.5963 1.1793 0.0049 5 6 4.3053 2.3983 0.0107 6 1 5.3119 2.4395 -0.3783 7 6 3.7040 3.5554 0.5210 8 7 2.6545 3.4598 1.2955 9 14 4.4010 5.2354 0.0954 10 1 4.3612 5.4295 -1.3763 11 1 3.5903 6.2895 0.7565 12 1 5.8060 5.3228 0.5684 13 6 4.2947 -0.0450 -0.0014 14 6 3.6048 -1.2199 -0.0015 15 6 2.2054 -1.2125 -0.0005 16 6 1.4614 -2.4918 -0.0005 17 6 0.4426 -2.7103 0.9286 18 6 -0.2502 -3.9031 0.9202 19 6 0.0695 -4.8859 -0.0001 20 6 -0.6881 -6.1886 0.0000 21 1 -0.5677 -6.6790 -0.9660 22 6 -0.1421 -7.0960 1.1042 23 8 -2.0744 -5.9335 0.2350 24 6 1.0821 -4.6779 -0.9202 25 6 1.7791 -3.4876 -0.9259 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6472 2.1161 -0.0004 30 1 2.2378 4.2614 1.6488 31 1 5.3746 -0.0518 -0.0018 32 1 4.1390 -2.1585 -0.0019 33 1 0.1953 -1.9458 1.6503 34 1 -1.0414 -4.0716 1.6357 35 1 -0.2626 -6.6056 2.0701 36 1 -0.6899 -8.0384 1.1040 37 1 0.9152 -7.2907 0.9249 38 1 -2.2565 -5.4974 1.0787 39 1 1.3269 -5.4491 -1.6356 40 1 2.5687 -3.3263 -1.6447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242649156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:15 Heat of formation + Delta-G solvation = -29.457373 kcal Electronic energy + Delta-G solvation = -20948.252941 eV Core-core repulsion = 17884.324533 eV Total energy + Delta-G solvation = -3063.928409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.51350 -37.97842 -36.58603 -34.05821 -32.21933 -31.56621 -30.55831 -30.01137 -28.31217 -25.92213 -25.36703 -23.33857 -22.15115 -21.33071 -20.16162 -19.53660 -17.40001 -17.15691 -15.79375 -15.65163 -15.25168 -14.92140 -14.11615 -14.01326 -13.72496 -13.64747 -13.18819 -13.11476 -12.98357 -12.58284 -12.32369 -12.04745 -11.95347 -11.81182 -11.57496 -11.36061 -11.15716 -11.06123 -10.95222 -10.72365 -10.62191 -10.28133 -10.08404 -9.64135 -9.50343 -9.28458 -8.55387 -8.27291 -7.43914 -7.19106 -6.87868 -4.43662 1.58689 1.80615 2.70787 2.99612 3.01753 3.03948 3.14167 3.83210 4.09883 4.41624 4.54179 4.73711 5.00267 5.09067 5.27187 5.31180 5.55675 5.57011 5.64498 5.71842 5.89664 5.93762 6.01992 6.07850 6.09643 6.29817 6.36588 6.42703 6.47754 6.62221 6.77811 6.84862 6.87674 6.94016 7.06951 7.25151 7.30927 7.39502 7.52892 7.55270 7.84806 7.96521 8.06760 8.19669 8.52146 8.76492 8.87956 10.03745 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.003420 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.451209 B = 8186.318033 C = 8583.661627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.048 4.048 3 C -0.168 4.168 4 C 0.119 3.881 5 C -0.454 4.454 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.782 5.782 9 Si 0.910 3.090 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.264 1.264 13 C -0.233 4.233 14 C -0.063 4.063 15 C -0.206 4.206 16 C 0.022 3.978 17 C -0.122 4.122 18 C -0.111 4.111 19 C -0.150 4.150 20 C 0.148 3.852 21 H 0.101 0.899 22 C -0.179 4.179 23 O -0.562 6.562 24 C -0.108 4.108 25 C -0.127 4.127 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.119 0.881 30 H 0.284 0.716 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.373 0.627 39 H 0.113 0.887 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 -11.053 -0.222 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.048 4.048 3 C -0.187 4.187 4 C 0.117 3.883 5 C -0.482 4.482 6 H 0.098 0.902 7 C -0.144 4.144 8 N -0.406 5.406 9 Si 0.734 3.266 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.189 1.189 13 C -0.252 4.252 14 C -0.081 4.081 15 C -0.207 4.207 16 C 0.022 3.978 17 C -0.140 4.140 18 C -0.129 4.129 19 C -0.150 4.150 20 C 0.089 3.911 21 H 0.118 0.882 22 C -0.236 4.236 23 O -0.368 6.368 24 C -0.127 4.127 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.221 0.779 39 H 0.131 0.869 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.197 -11.182 -0.647 12.347 hybrid contribution 0.529 1.126 0.524 1.350 sum -4.667 -10.056 -0.123 11.087 Atomic orbital electron populations 1.20775 0.93822 1.00903 1.00664 1.19232 0.93740 0.92789 0.99025 1.20861 0.94270 0.96121 1.07477 1.17671 0.92046 0.92070 0.86545 1.19620 1.01191 0.92575 1.34825 0.90213 1.25985 0.94215 1.01666 0.92546 1.69804 1.17715 1.31907 1.21187 0.86336 0.79914 0.80288 0.80082 1.18664 1.20201 1.18870 1.20652 0.97747 0.92568 1.14281 1.20272 0.92624 0.96466 0.98768 1.17921 0.92340 0.90004 1.20457 1.19007 0.93252 0.93226 0.92282 1.21340 0.96849 0.96740 0.99035 1.20637 0.99758 0.93984 0.98544 1.20309 0.99360 0.96873 0.98496 1.20713 0.79968 0.91466 0.98903 0.88159 1.22482 1.02013 0.99956 0.99186 1.86577 1.24332 1.82348 1.43507 1.20769 0.96268 0.97276 0.98348 1.21304 1.00541 0.93472 0.99241 0.92618 0.92980 0.92764 0.86333 0.90546 0.88898 0.89334 0.86143 0.87224 0.92207 0.91958 0.91428 0.77932 0.86856 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 8.44 36.01 0.30 -1.71 16 2 C -0.05 -1.08 5.83 -104.70 -0.61 -1.70 16 3 C -0.17 -4.25 8.26 -39.28 -0.32 -4.58 16 4 C 0.12 3.11 5.57 -106.80 -0.60 2.51 16 5 C -0.45 -11.68 9.03 -37.86 -0.34 -12.02 16 6 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 7 C 0.08 1.83 5.13 -17.33 -0.09 1.74 16 8 N -0.78 -19.53 10.96 55.55 0.61 -18.92 16 9 Si 0.91 18.02 29.60 -169.99 -5.03 12.99 16 10 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 11 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 13 C -0.23 -5.62 9.73 -39.27 -0.38 -6.00 16 14 C -0.06 -1.40 9.43 -39.66 -0.37 -1.78 16 15 C -0.21 -4.51 5.50 -104.63 -0.58 -5.08 16 16 C 0.02 0.42 4.70 -104.88 -0.49 -0.07 16 17 C -0.12 -2.06 7.90 -39.18 -0.31 -2.36 16 18 C -0.11 -1.58 9.30 -39.63 -0.37 -1.95 16 19 C -0.15 -2.05 4.98 -104.51 -0.52 -2.57 16 20 C 0.15 1.67 3.82 -27.88 -0.11 1.57 16 21 H 0.10 1.08 8.00 -51.93 -0.42 0.66 16 22 C -0.18 -1.69 9.51 37.16 0.35 -1.33 16 23 O -0.56 -6.63 13.19 -35.23 -0.46 -7.10 16 24 C -0.11 -1.56 9.65 -39.64 -0.38 -1.95 16 25 C -0.13 -2.14 9.51 -39.18 -0.37 -2.51 16 26 H 0.06 1.00 7.49 -51.93 -0.39 0.61 16 27 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 28 H 0.05 0.99 6.45 -51.93 -0.33 0.65 16 29 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 30 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 31 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.09 1.76 8.03 -52.48 -0.42 1.34 16 33 H 0.12 2.04 6.86 -52.49 -0.36 1.68 16 34 H 0.11 1.24 6.77 -52.49 -0.36 0.88 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.37 3.27 7.49 45.56 0.34 3.61 16 39 H 0.11 1.34 8.03 -52.49 -0.42 0.92 16 40 H 0.12 1.92 8.04 -52.49 -0.42 1.50 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -27.54 331.46 -9.84 -37.38 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.76 Total: 10.46 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: -5.19 Total: -39.80 kcal Atomic # 7 Polarization: -19.53 SS G_CDS: 0.61 Total: -18.92 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.46 Total: -7.10 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.54 -9.84 -37.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242649156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.921 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds