Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36270 * 119.93803 * 2 1 4 4 C 1.40915 * 119.87719 * 179.76743 * 3 2 1 5 5 C 1.41026 * 120.11532 * 180.27372 * 4 3 2 6 6 H 1.07999 * 120.00610 * 330.37418 * 5 4 3 7 7 C 1.40019 * 119.99546 * 150.37209 * 5 4 3 8 8 N 1.30788 * 119.99927 * 161.73143 * 7 5 4 9 9 Si 1.86799 * 120.00001 * 341.72755 * 7 5 4 10 10 H 1.48505 * 109.47098 * 95.41668 * 9 7 5 11 11 H 1.48493 * 109.47369 * 215.41782 * 9 7 5 12 12 H 1.48499 * 109.47371 * 335.41961 * 9 7 5 13 13 C 1.40947 * 119.76549 * 0.53415 * 4 3 2 14 14 C 1.36243 * 119.87309 * 359.46582 * 13 4 3 15 15 C 1.39917 * 119.94138 * 180.02562 * 2 1 3 16 16 C 1.47988 * 119.87903 * 359.97236 * 15 2 1 17 17 C 1.39606 * 120.14459 * 309.70390 * 16 15 2 18 18 C 1.37935 * 119.85094 * 179.76642 * 17 16 15 19 19 C 1.38393 * 120.14429 * 0.53846 * 18 17 16 20 20 C 1.50705 * 119.85284 * 179.71790 * 19 18 17 21 21 H 1.08998 * 109.47221 * 204.97259 * 20 19 18 22 22 C 1.53006 * 109.46952 * 84.97684 * 20 19 18 23 23 O 1.42896 * 109.47347 * 324.97780 * 20 19 18 24 24 C 1.38388 * 120.29163 * 359.69316 * 19 18 17 25 25 C 1.37936 * 120.14755 * 0.04487 * 24 19 18 26 26 H 1.08993 * 109.46822 * 269.96983 * 1 2 3 27 27 H 1.08998 * 109.46839 * 29.97837 * 1 2 3 28 28 H 1.09001 * 109.46803 * 149.97571 * 1 2 3 29 29 H 1.08004 * 120.05900 * 0.02562 * 3 2 1 30 30 H 0.97002 * 119.99994 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.06464 * 179.74797 * 13 4 3 32 32 H 1.07999 * 119.93722 * 180.27645 * 14 13 4 33 33 H 1.07998 * 120.07379 * 0.02562 * 17 16 15 34 34 H 1.07996 * 119.92667 * 180.22789 * 18 17 16 35 35 H 1.09005 * 109.47141 * 299.99640 * 22 20 19 36 36 H 1.08992 * 109.47174 * 59.99823 * 22 20 19 37 37 H 1.08997 * 109.47180 * 180.02562 * 22 20 19 38 38 H 0.96699 * 114.00016 * 180.02562 * 23 20 19 39 39 H 1.08001 * 119.92338 * 180.02562 * 24 19 18 40 40 H 1.07995 * 120.07737 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5963 1.1794 0.0050 5 6 4.3051 2.3985 0.0108 6 1 3.8754 3.2753 -0.4506 7 6 5.5661 2.4722 0.6150 8 7 6.3730 3.4601 0.3260 9 14 6.0960 1.1594 1.8337 10 1 6.8955 0.1245 1.1300 11 1 6.9198 1.7795 2.9022 12 1 4.8939 0.5304 2.4376 13 6 4.2947 -0.0448 -0.0015 14 6 3.6049 -1.2197 -0.0015 15 6 2.2054 -1.2124 -0.0005 16 6 1.4614 -2.4917 -0.0005 17 6 0.4427 -2.7103 0.9287 18 6 -0.2500 -3.9030 0.9202 19 6 0.0703 -4.8862 0.0005 20 6 -0.6866 -6.1894 0.0012 21 1 -0.0643 -6.9713 -0.4341 22 6 -1.9655 -6.0368 -0.8247 23 8 -1.0257 -6.5426 1.3436 24 6 1.0823 -4.6778 -0.9202 25 6 1.7793 -3.4875 -0.9259 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6471 2.1162 0.0004 30 1 7.2464 3.5113 0.7448 31 1 5.3747 -0.0516 -0.0019 32 1 4.1390 -2.1584 -0.0019 33 1 0.1948 -1.9455 1.6498 34 1 -1.0408 -4.0719 1.6361 35 1 -2.5880 -5.2549 -0.3894 36 1 -1.7069 -5.7674 -1.8486 37 1 -2.5132 -6.9792 -0.8238 38 1 -1.5152 -7.3730 1.4201 39 1 1.3271 -5.4490 -1.6355 40 1 2.5691 -3.3262 -1.6446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242649157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = -26.220733 kcal Electronic energy + Delta-G solvation = -20987.013296 eV Core-core repulsion = 17923.225239 eV Total energy + Delta-G solvation = -3063.788057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.49816 -38.11337 -36.76584 -34.07875 -32.45818 -31.78115 -30.69289 -30.29960 -28.55657 -26.27670 -25.33765 -23.10404 -22.30714 -20.96864 -20.54774 -19.87766 -17.25752 -17.12726 -16.56354 -15.74334 -15.12238 -14.95659 -14.33552 -14.02642 -13.92859 -13.59781 -13.29264 -13.18956 -12.90767 -12.72624 -12.63486 -12.27566 -12.23595 -11.92582 -11.82212 -11.54760 -11.29536 -10.88623 -10.77732 -10.69328 -10.55327 -10.25585 -10.13944 -9.83893 -9.59214 -9.24123 -8.56516 -8.38362 -7.69246 -7.28823 -7.05754 -4.53909 1.51611 1.79057 2.57492 2.68988 3.07588 3.18917 3.28778 3.92668 4.01043 4.20253 4.45292 4.75891 4.95467 5.05719 5.24860 5.31980 5.39561 5.49738 5.55979 5.58037 5.82895 5.83316 5.88561 5.93167 6.02751 6.13279 6.20467 6.33424 6.42480 6.44706 6.51422 6.73659 6.78390 6.85128 6.85821 7.07304 7.12793 7.31658 7.44549 7.50876 7.64661 7.77654 7.83894 8.05438 8.26547 8.59710 8.71301 9.95594 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.032650 B = 0.003782 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.364037 B = 7400.917351 C = 7742.820233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.029 4.029 3 C -0.211 4.211 4 C 0.101 3.899 5 C -0.438 4.438 6 H 0.092 0.908 7 C 0.084 3.916 8 N -0.801 5.801 9 Si 0.914 3.086 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.243 1.243 13 C -0.245 4.245 14 C -0.050 4.050 15 C -0.203 4.203 16 C 0.018 3.982 17 C -0.127 4.127 18 C -0.091 4.091 19 C -0.116 4.116 20 C 0.147 3.853 21 H 0.058 0.942 22 C -0.179 4.179 23 O -0.563 6.563 24 C -0.109 4.109 25 C -0.128 4.128 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.287 0.713 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.374 0.626 39 H 0.114 0.886 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.008 -15.365 -0.430 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.029 4.029 3 C -0.230 4.230 4 C 0.097 3.903 5 C -0.465 4.465 6 H 0.110 0.890 7 C -0.137 4.137 8 N -0.424 5.424 9 Si 0.740 3.260 10 H -0.195 1.195 11 H -0.218 1.218 12 H -0.166 1.166 13 C -0.264 4.264 14 C -0.068 4.068 15 C -0.205 4.205 16 C 0.018 3.982 17 C -0.145 4.145 18 C -0.109 4.109 19 C -0.116 4.116 20 C 0.089 3.911 21 H 0.076 0.924 22 C -0.237 4.237 23 O -0.368 6.368 24 C -0.127 4.127 25 C -0.146 4.146 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.221 0.779 39 H 0.132 0.868 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.463 -14.587 -0.306 17.954 hybrid contribution 0.241 -0.910 0.292 0.985 sum -10.221 -15.497 -0.014 18.564 Atomic orbital electron populations 1.20841 0.93389 1.01443 1.01013 1.19193 0.93884 0.92608 0.97253 1.20568 0.93796 0.95749 1.12913 1.17763 0.91934 0.92574 0.87995 1.19550 0.99375 0.96938 1.30680 0.88992 1.26245 0.94915 0.96180 0.96326 1.69680 1.07610 1.30057 1.35022 0.86270 0.80001 0.80047 0.79710 1.19522 1.21757 1.16575 1.20709 0.98168 0.92845 1.14640 1.20366 0.92738 0.96631 0.97047 1.17924 0.92258 0.90188 1.20084 1.18961 0.93426 0.93123 0.92678 1.21380 0.97027 0.97074 0.99050 1.20785 0.99507 0.92768 0.97818 1.19410 0.98445 0.94970 0.98780 1.20481 0.94147 0.94047 0.82431 0.92391 1.22489 0.97953 1.02161 1.01073 1.86586 1.78311 1.44880 1.27037 1.20720 0.95757 0.97539 0.98709 1.21246 1.00557 0.93424 0.99408 0.92284 0.92661 0.92254 0.88070 0.90226 0.88173 0.88769 0.86187 0.86371 0.91637 0.91414 0.92504 0.77898 0.86840 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 8.44 36.01 0.30 -1.57 16 2 C -0.03 -0.61 5.83 -104.70 -0.61 -1.22 16 3 C -0.21 -4.88 9.36 -39.28 -0.37 -5.25 16 4 C 0.10 2.53 5.10 -106.80 -0.55 1.98 16 5 C -0.44 -11.67 9.55 -37.86 -0.36 -12.03 16 6 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 7 C 0.08 2.16 5.40 -17.33 -0.09 2.07 16 8 N -0.80 -20.98 13.93 55.55 0.77 -20.20 16 9 Si 0.91 20.73 24.51 -169.99 -4.17 16.56 16 10 H -0.27 -5.94 6.70 56.52 0.38 -5.56 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.24 -5.70 6.87 56.52 0.39 -5.31 16 13 C -0.24 -5.88 7.11 -39.27 -0.28 -6.16 16 14 C -0.05 -1.09 9.43 -39.66 -0.37 -1.46 16 15 C -0.20 -4.26 5.50 -104.63 -0.58 -4.83 16 16 C 0.02 0.33 4.70 -104.88 -0.49 -0.16 16 17 C -0.13 -2.12 7.90 -39.18 -0.31 -2.43 16 18 C -0.09 -1.36 9.33 -39.64 -0.37 -1.73 16 19 C -0.12 -1.61 5.01 -104.51 -0.52 -2.13 16 20 C 0.15 1.57 3.79 -27.88 -0.11 1.47 16 21 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 22 C -0.18 -1.57 9.52 37.16 0.35 -1.22 16 23 O -0.56 -6.02 12.45 -35.23 -0.44 -6.46 16 24 C -0.11 -1.53 9.66 -39.64 -0.38 -1.92 16 25 C -0.13 -2.09 9.51 -39.18 -0.37 -2.46 16 26 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 27 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.06 0.97 6.45 -51.93 -0.33 0.64 16 29 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 30 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 31 H 0.10 2.40 4.73 -52.49 -0.25 2.15 16 32 H 0.09 1.87 8.03 -52.49 -0.42 1.44 16 33 H 0.12 1.95 6.86 -52.49 -0.36 1.59 16 34 H 0.12 1.65 7.62 -52.49 -0.40 1.25 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.37 2.16 9.08 45.56 0.41 2.57 16 39 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.88 8.04 -52.49 -0.42 1.46 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -28.52 328.03 -8.70 -37.22 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.71 Total: 7.00 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: -5.11 Total: -39.06 kcal Atomic # 7 Polarization: -20.98 SS G_CDS: 0.77 Total: -20.20 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.44 Total: -6.46 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.17 Total: 16.56 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.52 -8.70 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242649157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.001 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds