Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38043 * 120.06137 * 2 1 4 4 C 1.38300 * 120.11958 * 180.27705 * 3 2 1 5 5 C 1.38340 * 120.24409 * 359.76961 * 4 3 2 6 6 C 1.50703 * 119.93654 * 179.97438 * 5 4 3 7 7 O 1.42904 * 109.47012 * 270.01955 * 6 5 4 8 8 C 1.37995 * 120.12417 * 359.97438 * 5 4 3 9 9 C 1.39316 * 120.06239 * 179.77229 * 2 1 3 10 10 C 1.48400 * 120.12299 * 359.97321 * 9 2 1 11 11 C 1.39327 * 120.12198 * 129.72641 * 10 9 2 12 12 C 1.38022 * 119.87973 * 179.97438 * 11 10 9 13 13 C 1.38316 * 120.11627 * 0.27933 * 12 11 10 14 14 C 1.50703 * 119.87525 * 179.69883 * 13 12 11 15 15 C 1.50696 * 109.47121 * 90.00191 * 14 13 12 16 16 H 1.08001 * 119.99823 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00010 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00277 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47191 * 60.00270 * 19 17 15 21 21 H 1.48501 * 109.47100 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47500 * 300.00295 * 19 17 15 23 23 C 1.38321 * 120.24650 * 359.44564 * 13 12 11 24 24 C 1.38022 * 120.11910 * 0.55009 * 23 13 12 25 25 H 1.08998 * 109.46903 * 270.22527 * 1 2 3 26 26 H 1.08992 * 109.47543 * 30.23432 * 1 2 3 27 27 H 1.09003 * 109.47050 * 150.23029 * 1 2 3 28 28 H 1.08002 * 119.93638 * 0.04559 * 3 2 1 29 29 H 1.08004 * 119.87397 * 179.74691 * 4 3 2 30 30 H 1.08995 * 109.46974 * 30.02065 * 6 5 4 31 31 H 1.08999 * 109.46926 * 150.02249 * 6 5 4 32 32 H 0.96700 * 113.99972 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.06616 * 179.97438 * 8 5 4 34 34 H 1.07999 * 120.06152 * 0.02562 * 11 10 9 35 35 H 1.08002 * 119.93878 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.47337 * 210.00044 * 14 13 12 37 37 H 1.09000 * 109.47278 * 329.99845 * 14 13 12 38 38 H 0.97004 * 120.00503 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.94246 * 180.27566 * 23 13 12 40 40 H 1.08003 * 120.06203 * 179.74403 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1947 0.0000 4 6 3.5815 1.1962 -0.0058 5 6 4.2795 0.0018 -0.0068 6 6 5.7865 0.0114 -0.0137 7 8 6.2566 0.0124 -1.3632 8 6 3.5985 -1.1984 -0.0015 9 6 2.2049 -1.2057 0.0048 10 6 1.4670 -2.4933 0.0105 11 6 1.7873 -3.4868 -0.9123 12 6 1.0982 -4.6826 -0.9022 13 6 0.0874 -4.8934 0.0182 14 6 -0.6660 -6.1985 0.0200 15 6 0.0267 -7.1772 0.9328 16 1 0.9232 -6.8836 1.4587 17 6 -0.4840 -8.4474 1.0966 18 7 -1.5753 -8.8051 0.4559 19 14 0.3752 -9.6608 2.2276 20 1 0.4152 -9.1098 3.6059 21 1 -0.3673 -10.9468 2.2294 22 1 1.7610 -9.8906 1.7460 23 6 -0.2309 -3.9127 0.9403 24 6 0.4518 -2.7132 0.9391 25 1 -0.3633 0.0040 1.0276 26 1 -0.3634 0.8878 -0.5174 27 1 -0.3633 -0.8921 -0.5103 28 1 1.6584 2.1300 0.0007 29 1 4.1185 2.1332 -0.0099 30 1 6.1464 0.9044 0.4972 31 1 6.1578 -0.8755 0.4997 32 1 7.2202 0.0181 -1.4440 33 1 4.1443 -2.1303 -0.0027 34 1 2.5739 -3.3218 -1.6337 35 1 1.3454 -5.4533 -1.6173 36 1 -1.6836 -6.0302 0.3729 37 1 -0.6947 -6.6030 -0.9918 38 1 -1.9344 -9.6989 0.5708 39 1 -1.0180 -4.0842 1.6595 40 1 0.1997 -1.9465 1.6569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242668371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -22.594171 kcal Electronic energy + Delta-G solvation = -20583.942584 eV Core-core repulsion = 17520.311786 eV Total energy + Delta-G solvation = -3063.630798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95587 -38.30838 -36.84439 -33.89477 -33.01617 -32.07401 -30.32246 -29.91824 -28.43798 -26.74872 -24.52221 -23.66575 -22.38110 -21.70961 -20.72593 -19.74509 -17.66654 -16.51983 -16.30562 -15.90006 -15.50511 -14.97453 -14.56381 -14.31298 -14.23786 -14.06352 -13.61542 -13.47580 -12.80272 -12.73988 -12.57298 -12.34150 -12.13263 -11.91470 -11.81627 -11.30472 -11.29329 -10.98075 -10.91171 -10.72010 -10.50522 -10.30197 -10.23077 -9.59127 -9.47553 -8.89059 -8.62945 -8.43922 -8.30604 -7.56739 -6.05716 -4.09939 1.12104 1.31738 2.04668 2.14925 3.31071 3.35161 3.38391 3.61105 4.28730 4.35714 4.52273 4.68704 4.82432 4.87406 4.96744 5.03395 5.19462 5.28507 5.34308 5.43921 5.47621 5.53372 5.67511 5.72668 5.83862 5.95833 6.00975 6.10637 6.22441 6.24414 6.35863 6.48006 6.60666 6.64623 6.73215 6.97321 7.09216 7.16219 7.18111 7.36552 7.48163 7.69400 7.82865 7.89805 8.29743 8.95083 9.53940 11.04013 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.003483 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.070207 B = 8037.041354 C = 8789.009755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.070 4.070 3 C -0.124 4.124 4 C -0.105 4.105 5 C -0.102 4.102 6 C 0.119 3.881 7 O -0.567 6.567 8 C -0.086 4.086 9 C -0.029 4.029 10 C -0.088 4.088 11 C -0.104 4.104 12 C -0.125 4.125 13 C -0.025 4.025 14 C 0.046 3.954 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.126 4.126 24 C -0.103 4.103 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.378 0.622 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.120 0.880 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 19.713 -0.756 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.123 4.123 5 C -0.102 4.102 6 C 0.042 3.958 7 O -0.373 6.373 8 C -0.104 4.104 9 C -0.029 4.029 10 C -0.088 4.088 11 C -0.122 4.122 12 C -0.143 4.143 13 C -0.025 4.025 14 C 0.009 3.991 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.144 4.144 24 C -0.121 4.121 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.225 0.775 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.647 19.552 -0.903 21.821 hybrid contribution 1.114 -0.749 0.799 1.562 sum 10.760 18.803 -0.104 21.665 Atomic orbital electron populations 1.20921 0.90995 1.03099 1.02404 1.20025 0.96237 0.92158 0.98585 1.20908 0.93940 0.97367 1.02010 1.20952 0.94115 0.97172 1.00025 1.19458 0.94105 0.93458 1.03205 1.20964 0.90962 1.00265 0.83627 1.86593 1.26601 1.97702 1.26398 1.21121 0.93289 0.97445 0.98590 1.18758 0.92480 0.92214 0.99416 1.18444 0.98496 0.92996 0.98885 1.21073 0.99575 0.93306 0.98280 1.21031 0.96755 0.96459 1.00084 1.20784 0.93918 0.96355 0.91466 1.18386 0.94951 0.87590 0.98156 1.21013 1.10932 0.96583 1.26572 0.92510 1.25008 0.95021 0.98236 0.96020 1.69942 1.21162 1.19903 1.42291 0.86591 0.79643 0.80201 0.81222 1.20151 1.21208 1.20155 1.21027 1.00836 0.93068 0.99483 1.21080 0.95647 0.97306 0.98058 0.91054 0.91940 0.90487 0.86015 0.86361 0.92951 0.92744 0.77533 0.85848 0.86981 0.86241 0.95257 0.95273 0.92751 0.86238 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.46 36.01 0.30 -1.05 16 2 C -0.07 -0.92 5.87 -104.29 -0.61 -1.53 16 3 C -0.12 -1.43 9.69 -39.63 -0.38 -1.81 16 4 C -0.10 -1.19 9.69 -39.52 -0.38 -1.57 16 5 C -0.10 -1.25 5.50 -104.67 -0.58 -1.83 16 6 C 0.12 1.13 7.17 36.01 0.26 1.39 16 7 O -0.57 -5.73 13.64 -35.23 -0.48 -6.21 16 8 C -0.09 -1.20 9.16 -39.25 -0.36 -1.56 16 9 C -0.03 -0.42 5.47 -104.89 -0.57 -1.00 16 10 C -0.09 -1.46 4.71 -104.90 -0.49 -1.95 16 11 C -0.10 -1.80 9.51 -39.26 -0.37 -2.18 16 12 C -0.13 -2.46 9.68 -39.63 -0.38 -2.84 16 13 C -0.03 -0.54 5.07 -104.56 -0.53 -1.08 16 14 C 0.05 1.18 5.10 -29.04 -0.15 1.03 16 15 C -0.51 -14.34 9.09 -34.44 -0.31 -14.65 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 C -0.13 -2.44 9.68 -39.63 -0.38 -2.82 16 24 C -0.10 -1.72 7.92 -39.25 -0.31 -2.03 16 25 H 0.07 0.75 7.51 -51.93 -0.39 0.36 16 26 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.08 1.01 6.47 -51.93 -0.34 0.67 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.38 1.84 9.12 45.56 0.42 2.26 16 33 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16 34 H 0.11 1.73 8.04 -52.49 -0.42 1.31 16 35 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 36 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 40 H 0.11 1.64 6.88 -52.48 -0.36 1.28 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -31.72 339.81 -9.85 -41.57 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.85 Total: 2.54 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -5.36 Total: -33.91 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.48 Total: -6.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.72 -9.85 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242668371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.978 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds