Wall clock time and date at job start Tue Mar 31 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38043 * 120.06137 * 2 1 4 4 C 1.38300 * 120.11958 * 180.27705 * 3 2 1 5 5 C 1.38340 * 120.24409 * 359.76961 * 4 3 2 6 6 C 1.50703 * 119.93654 * 179.97438 * 5 4 3 7 7 O 1.42904 * 109.47012 * 270.01955 * 6 5 4 8 8 C 1.37995 * 120.12417 * 359.97438 * 5 4 3 9 9 C 1.39316 * 120.06239 * 179.77229 * 2 1 3 10 10 C 1.48400 * 120.12299 * 359.97321 * 9 2 1 11 11 C 1.39327 * 120.12198 * 129.72641 * 10 9 2 12 12 C 1.38022 * 119.87973 * 179.97438 * 11 10 9 13 13 C 1.38316 * 120.11627 * 0.27933 * 12 11 10 14 14 C 1.50703 * 119.87525 * 179.69883 * 13 12 11 15 15 C 1.50696 * 109.47121 * 90.00191 * 14 13 12 16 16 H 1.08001 * 119.99823 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00010 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00277 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47191 * 60.00270 * 19 17 15 21 21 H 1.48501 * 109.47100 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47500 * 300.00295 * 19 17 15 23 23 C 1.38321 * 120.24650 * 359.44564 * 13 12 11 24 24 C 1.38022 * 120.11910 * 0.55009 * 23 13 12 25 25 H 1.08998 * 109.46903 * 270.22527 * 1 2 3 26 26 H 1.08992 * 109.47543 * 30.23432 * 1 2 3 27 27 H 1.09003 * 109.47050 * 150.23029 * 1 2 3 28 28 H 1.08002 * 119.93638 * 0.04559 * 3 2 1 29 29 H 1.08004 * 119.87397 * 179.74691 * 4 3 2 30 30 H 1.08995 * 109.46974 * 30.02065 * 6 5 4 31 31 H 1.08999 * 109.46926 * 150.02249 * 6 5 4 32 32 H 0.96700 * 113.99972 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.06616 * 179.97438 * 8 5 4 34 34 H 1.07999 * 120.06152 * 0.02562 * 11 10 9 35 35 H 1.08002 * 119.93878 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.47337 * 210.00044 * 14 13 12 37 37 H 1.09000 * 109.47278 * 329.99845 * 14 13 12 38 38 H 0.97004 * 120.00503 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.94246 * 180.27566 * 23 13 12 40 40 H 1.08003 * 120.06203 * 179.74403 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1947 0.0000 4 6 3.5815 1.1962 -0.0058 5 6 4.2795 0.0018 -0.0068 6 6 5.7865 0.0114 -0.0137 7 8 6.2566 0.0124 -1.3632 8 6 3.5985 -1.1984 -0.0015 9 6 2.2049 -1.2057 0.0048 10 6 1.4670 -2.4933 0.0105 11 6 1.7873 -3.4868 -0.9123 12 6 1.0982 -4.6826 -0.9022 13 6 0.0874 -4.8934 0.0182 14 6 -0.6660 -6.1985 0.0200 15 6 0.0267 -7.1772 0.9328 16 1 0.9232 -6.8836 1.4587 17 6 -0.4840 -8.4474 1.0966 18 7 -1.5753 -8.8051 0.4559 19 14 0.3752 -9.6608 2.2276 20 1 0.4152 -9.1098 3.6059 21 1 -0.3673 -10.9468 2.2294 22 1 1.7610 -9.8906 1.7460 23 6 -0.2309 -3.9127 0.9403 24 6 0.4518 -2.7132 0.9391 25 1 -0.3633 0.0040 1.0276 26 1 -0.3634 0.8878 -0.5174 27 1 -0.3633 -0.8921 -0.5103 28 1 1.6584 2.1300 0.0007 29 1 4.1185 2.1332 -0.0099 30 1 6.1464 0.9044 0.4972 31 1 6.1578 -0.8755 0.4997 32 1 7.2202 0.0181 -1.4440 33 1 4.1443 -2.1303 -0.0027 34 1 2.5739 -3.3218 -1.6337 35 1 1.3454 -5.4533 -1.6173 36 1 -1.6836 -6.0302 0.3729 37 1 -0.6947 -6.6030 -0.9918 38 1 -1.9344 -9.6989 0.5708 39 1 -1.0180 -4.0842 1.6595 40 1 0.1997 -1.9465 1.6569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242668371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:37 Heat of formation + Delta-G solvation = -40.295049 kcal Electronic energy + Delta-G solvation = -20584.710152 eV Core-core repulsion = 17520.311786 eV Total energy + Delta-G solvation = -3064.398365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04300 -39.59662 -37.62695 -35.61422 -34.26926 -33.46794 -31.76089 -31.37267 -29.31549 -28.43348 -25.60851 -25.13374 -23.71963 -23.09940 -21.97446 -20.98065 -18.53121 -18.34689 -17.60407 -16.86631 -16.78715 -16.40525 -15.94267 -15.91319 -15.36665 -14.89680 -14.57078 -14.51276 -14.39409 -14.16513 -14.14171 -13.49494 -13.30440 -13.18375 -13.14151 -12.82983 -12.74500 -12.54894 -12.48533 -11.97028 -11.89799 -11.75624 -11.55687 -11.32823 -10.96084 -10.61736 -10.03224 -9.77068 -9.59110 -8.98311 -8.21072 -6.35316 0.02881 0.37275 0.57621 0.82748 1.38783 1.41440 1.49859 2.38366 2.66826 3.00897 3.08978 3.56273 3.68571 3.93719 4.03764 4.08919 4.13617 4.15573 4.26636 4.33886 4.44225 4.53107 4.60197 4.66457 4.72679 4.80015 4.82032 4.94105 5.05817 5.10049 5.16957 5.28965 5.32616 5.37120 5.44476 5.57936 5.58249 5.64012 5.73423 5.79003 6.05529 6.06202 6.10146 6.23312 6.76967 6.92418 7.33260 8.87544 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.003483 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.070207 B = 8037.041354 C = 8789.009755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C -0.124 4.124 4 C -0.101 4.101 5 C -0.112 4.112 6 C 0.119 3.881 7 O -0.590 6.590 8 C -0.100 4.100 9 C -0.056 4.056 10 C -0.071 4.071 11 C -0.104 4.104 12 C -0.134 4.134 13 C -0.058 4.058 14 C 0.056 3.944 15 C -0.531 4.531 16 H 0.053 0.947 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.268 1.268 23 C -0.133 4.133 24 C -0.094 4.094 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.399 0.601 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.005 0.995 37 H 0.003 0.997 38 H 0.266 0.734 39 H 0.118 0.882 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.400 22.360 0.184 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.141 4.141 4 C -0.119 4.119 5 C -0.113 4.113 6 C 0.042 3.958 7 O -0.399 6.399 8 C -0.118 4.118 9 C -0.056 4.056 10 C -0.071 4.071 11 C -0.122 4.122 12 C -0.152 4.152 13 C -0.058 4.058 14 C 0.019 3.981 15 C -0.569 4.569 16 H 0.072 0.928 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.193 1.193 23 C -0.151 4.151 24 C -0.112 4.112 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.249 0.751 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.075 0.925 39 H 0.136 0.864 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.648 22.211 0.032 25.080 hybrid contribution 0.571 -1.386 0.456 1.566 sum 12.219 20.826 0.488 24.150 Atomic orbital electron populations 1.20939 0.90204 1.03136 1.03118 1.20230 0.96956 0.92154 0.98366 1.21254 0.94287 0.97819 1.00776 1.21358 0.94336 0.97973 0.98230 1.19829 0.95832 0.93139 1.02458 1.21018 0.89308 1.01817 0.83699 1.86523 1.28840 1.97801 1.26762 1.21199 0.93071 0.98230 0.99299 1.18727 0.92937 0.91731 1.02245 1.18718 0.97473 0.93587 0.97316 1.21234 0.99575 0.92523 0.98852 1.21015 0.96842 0.97547 0.99813 1.20468 0.95595 0.95530 0.94216 1.18115 0.94244 0.89701 0.96029 1.21340 1.10986 0.97574 1.26968 0.92823 1.25928 0.95664 1.00185 0.97544 1.70068 1.22614 1.20539 1.43724 0.85493 0.78637 0.77686 0.79216 1.19208 1.20432 1.19334 1.21050 1.01313 0.93661 0.99042 1.21270 0.95006 0.96608 0.98323 0.89976 0.89833 0.92537 0.83190 0.83633 0.90432 0.92194 0.75076 0.86376 0.85114 0.86769 0.97648 0.97906 0.92497 0.86376 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.46 71.24 0.60 -1.83 16 2 C -0.08 -1.81 5.87 -19.65 -0.12 -1.93 16 3 C -0.12 -2.38 9.69 22.24 0.22 -2.16 16 4 C -0.10 -1.91 9.69 22.31 0.22 -1.69 16 5 C -0.11 -2.44 5.50 -19.90 -0.11 -2.55 16 6 C 0.12 1.90 7.17 71.24 0.51 2.41 16 7 O -0.59 -10.35 13.64 -148.98 -2.03 -12.38 16 8 C -0.10 -2.61 9.16 22.48 0.21 -2.40 16 9 C -0.06 -1.57 5.47 -20.04 -0.11 -1.68 16 10 C -0.07 -2.29 4.71 -20.04 -0.09 -2.39 16 11 C -0.10 -3.60 9.51 22.48 0.21 -3.39 16 12 C -0.13 -5.48 9.68 22.24 0.22 -5.27 16 13 C -0.06 -2.64 5.07 -19.83 -0.10 -2.74 16 14 C 0.06 3.06 5.10 29.10 0.15 3.21 16 15 C -0.53 -30.85 9.09 25.60 0.23 -30.61 16 16 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 17 C 0.01 0.29 5.46 84.66 0.46 0.76 16 18 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 19 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C -0.13 -5.26 9.68 22.24 0.22 -5.05 16 24 C -0.09 -3.10 7.92 22.48 0.18 -2.92 16 25 H 0.08 1.50 7.51 -2.39 -0.02 1.49 16 26 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 27 H 0.06 1.40 6.47 -2.39 -0.02 1.39 16 28 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.40 2.84 9.12 -74.06 -0.68 2.17 16 33 H 0.12 3.09 8.04 -2.91 -0.02 3.06 16 34 H 0.13 3.98 8.04 -2.91 -0.02 3.96 16 35 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.01 0.30 8.09 -2.38 -0.02 0.28 16 37 H 0.00 0.15 8.08 -2.39 -0.02 0.13 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 40 H 0.14 3.80 6.88 -2.91 -0.02 3.78 16 Total: -1.00 -70.22 339.81 3.53 -66.69 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.36 Total: 15.49 kcal Atomic # 6 Polarization: -63.12 SS G_CDS: 2.89 Total: -60.23 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.28 Total: -56.28 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -2.03 Total: -12.38 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.22 3.53 -66.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242668371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.394 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds