Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38036 * 120.05997 * 2 1 4 4 C 1.38299 * 120.11931 * 180.02562 * 3 2 1 5 5 C 1.38336 * 120.24581 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.94077 * 180.27444 * 5 4 3 7 7 O 1.42902 * 109.46958 * 269.72198 * 6 5 4 8 8 C 1.38005 * 120.12045 * 359.97438 * 5 4 3 9 9 C 1.39311 * 120.06064 * 180.02562 * 2 1 3 10 10 C 1.48395 * 120.12213 * 359.97438 * 9 2 1 11 11 C 1.39352 * 120.12244 * 309.98098 * 10 9 2 12 12 C 1.37996 * 119.87750 * 180.02562 * 11 10 9 13 13 C 1.38347 * 120.12342 * 359.97438 * 12 11 10 14 14 C 1.38290 * 120.24187 * 359.97438 * 13 12 11 15 15 C 1.50707 * 119.94108 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46854 * 89.99997 * 15 14 13 17 17 H 1.07999 * 120.00358 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99687 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00073 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47032 * 59.99854 * 20 18 16 22 22 H 1.48499 * 109.47333 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47019 * 300.00004 * 20 18 16 24 24 C 1.38050 * 120.12463 * 359.76310 * 14 13 12 25 25 H 1.09004 * 109.47071 * 269.97981 * 1 2 3 26 26 H 1.09001 * 109.47230 * 29.97991 * 1 2 3 27 27 H 1.08997 * 109.47205 * 149.97814 * 1 2 3 28 28 H 1.08001 * 119.94336 * 0.04584 * 3 2 1 29 29 H 1.07998 * 119.87582 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46915 * 29.72507 * 6 5 4 31 31 H 1.09004 * 109.47089 * 149.72821 * 6 5 4 32 32 H 0.96699 * 113.99980 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.05774 * 179.97438 * 8 5 4 34 34 H 1.08002 * 120.06227 * 0.02562 * 11 10 9 35 35 H 1.08004 * 119.94030 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.87797 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.47279 * 209.99994 * 15 14 13 38 38 H 1.08994 * 109.46790 * 329.99957 * 15 14 13 39 39 H 0.97005 * 119.99547 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.06553 * 180.27592 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1947 0.0000 4 6 3.5815 1.1961 -0.0005 5 6 4.2795 0.0018 -0.0016 6 6 5.7865 0.0114 0.0041 7 8 6.2679 0.0120 -1.3414 8 6 3.5984 -1.1984 -0.0016 9 6 2.2049 -1.2057 -0.0005 10 6 1.4670 -2.4932 -0.0005 11 6 0.4477 -2.7151 0.9234 12 6 -0.2348 -3.9145 0.9192 13 6 0.0909 -4.8955 -0.0003 14 6 1.1008 -4.6802 -0.9201 15 6 1.4504 -5.7538 -1.9184 16 6 0.6209 -5.5713 -3.1633 17 1 -0.0881 -4.7591 -3.2256 18 6 0.7673 -6.4415 -4.2228 19 7 1.6303 -7.4309 -4.1467 20 14 -0.2603 -6.2150 -5.7662 21 1 0.0197 -4.8813 -6.3560 22 1 0.0831 -7.2736 -6.7494 23 1 -1.7013 -6.3104 -5.4200 24 6 1.7865 -3.4821 -0.9285 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6585 2.1300 0.0007 29 1 4.1185 2.1332 -0.0001 30 1 6.1422 0.9045 0.5177 31 1 6.1535 -0.8755 0.5208 32 1 7.2321 0.0184 -1.4142 33 1 4.1444 -2.1303 -0.0029 34 1 0.1923 -1.9498 1.6414 35 1 -1.0253 -4.0873 1.6346 36 1 -0.4456 -5.8328 0.0002 37 1 2.5079 -5.6830 -2.1728 38 1 1.2456 -6.7329 -1.4856 39 1 1.7329 -8.0433 -4.8920 40 1 2.5721 -3.3133 -1.6502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242668624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = -21.947643 kcal Electronic energy + Delta-G solvation = -20847.786824 eV Core-core repulsion = 17784.184062 eV Total energy + Delta-G solvation = -3063.602762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.90633 -38.27380 -36.74763 -33.78767 -32.96156 -32.06763 -31.07114 -28.95882 -28.25751 -26.95890 -24.46633 -23.29810 -23.23944 -21.23899 -20.92925 -19.32210 -17.56148 -16.40565 -16.17134 -15.85917 -15.66109 -15.10808 -14.58315 -14.46884 -14.04439 -13.90040 -13.58555 -13.39278 -12.96918 -12.59034 -12.38386 -12.27562 -12.17359 -11.81417 -11.59497 -11.31846 -11.22794 -11.06208 -10.86858 -10.69364 -10.48011 -10.27448 -10.16618 -9.60099 -9.43861 -8.93702 -8.60161 -8.41286 -7.99415 -7.70551 -6.03503 -4.07278 1.16495 1.38605 2.08278 2.15342 3.33268 3.37043 3.40630 3.67609 4.36987 4.38854 4.53959 4.74207 4.89870 4.93151 5.03467 5.10100 5.26605 5.31164 5.39452 5.46068 5.51564 5.56315 5.72247 5.76634 5.87795 5.97732 6.02505 6.16517 6.19952 6.30324 6.41523 6.50822 6.63385 6.73252 6.77140 6.99468 7.09618 7.17722 7.21170 7.48077 7.50061 7.70352 7.84308 7.92204 8.32261 8.97492 9.56549 11.06438 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.004416 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.649603 B = 6338.863871 C = 7126.075765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.125 4.125 4 C -0.103 4.103 5 C -0.102 4.102 6 C 0.119 3.881 7 O -0.566 6.566 8 C -0.083 4.083 9 C -0.033 4.033 10 C -0.059 4.059 11 C -0.132 4.132 12 C -0.125 4.125 13 C -0.119 4.119 14 C -0.034 4.034 15 C 0.048 3.952 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.105 4.105 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.378 0.622 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 15.703 11.670 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.143 4.143 4 C -0.121 4.121 5 C -0.102 4.102 6 C 0.042 3.958 7 O -0.371 6.371 8 C -0.101 4.101 9 C -0.033 4.033 10 C -0.059 4.059 11 C -0.150 4.150 12 C -0.143 4.143 13 C -0.137 4.137 14 C -0.034 4.034 15 C 0.011 3.989 16 C -0.550 4.550 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.123 4.123 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.225 0.775 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.512 15.542 11.441 19.615 hybrid contribution 0.082 0.081 -0.803 0.811 sum 3.594 15.623 10.638 19.239 Atomic orbital electron populations 1.20924 0.91064 1.03246 1.02166 1.19995 0.96189 0.92143 0.98488 1.20893 0.93952 0.97318 1.02155 1.20953 0.94103 0.97180 0.99874 1.19463 0.94165 0.93421 1.03160 1.20958 0.90823 1.00157 0.83853 1.86620 1.26392 1.97677 1.26420 1.21136 0.93239 0.97575 0.98124 1.18767 0.92592 0.92191 0.99768 1.18626 0.97070 0.92671 0.97572 1.20904 0.97035 0.97486 0.99561 1.20957 0.99953 0.93981 0.99407 1.21165 0.97831 0.99254 0.95441 1.20639 0.92705 0.95808 0.94223 1.18360 0.97512 0.91407 0.91625 1.21013 1.21972 1.13027 0.99015 0.92541 1.24999 0.95475 0.95119 0.98637 1.69949 1.35174 1.16125 1.32076 0.86604 0.80653 0.77847 0.82653 1.20139 1.21197 1.20155 1.21144 1.00592 0.92705 0.97853 0.91214 0.91920 0.90418 0.86027 0.86340 0.93024 0.92761 0.77543 0.85693 0.87009 0.86904 0.86403 0.95330 0.95258 0.92788 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.45 36.01 0.30 -1.14 16 2 C -0.07 -0.95 5.87 -104.30 -0.61 -1.57 16 3 C -0.13 -1.55 9.69 -39.63 -0.38 -1.93 16 4 C -0.10 -1.26 9.69 -39.52 -0.38 -1.64 16 5 C -0.10 -1.36 5.50 -104.67 -0.58 -1.93 16 6 C 0.12 1.26 7.17 36.01 0.26 1.52 16 7 O -0.57 -6.58 13.64 -35.23 -0.48 -7.06 16 8 C -0.08 -1.25 9.17 -39.25 -0.36 -1.61 16 9 C -0.03 -0.53 5.47 -104.90 -0.57 -1.10 16 10 C -0.06 -1.04 4.72 -104.90 -0.50 -1.53 16 11 C -0.13 -2.10 7.91 -39.26 -0.31 -2.41 16 12 C -0.12 -2.05 10.03 -39.63 -0.40 -2.45 16 13 C -0.12 -2.31 9.69 -39.52 -0.38 -2.69 16 14 C -0.03 -0.74 5.06 -104.67 -0.53 -1.27 16 15 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 16 C -0.51 -14.51 9.09 -34.44 -0.31 -14.82 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.10 -2.13 9.17 -39.25 -0.36 -2.49 16 25 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.08 1.10 6.46 -51.93 -0.34 0.77 16 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.38 2.39 9.12 45.56 0.42 2.80 16 33 H 0.13 1.85 8.05 -52.49 -0.42 1.43 16 34 H 0.11 1.51 6.85 -52.49 -0.36 1.15 16 35 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 36 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.12 2.45 8.05 -52.49 -0.42 2.03 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -32.25 339.77 -9.85 -42.10 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.84 Total: 3.29 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -5.36 Total: -34.37 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.48 Total: -7.06 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.25 -9.85 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242668624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.155 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds