Wall clock time and date at job start Tue Mar 31 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37959 * 120.07661 * 2 1 4 4 C 1.38366 * 120.14446 * 180.02562 * 3 2 1 5 5 C 1.38416 * 120.29373 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.92792 * 180.02562 * 5 4 3 7 7 O 1.42905 * 109.47214 * 90.00048 * 6 5 4 8 8 C 1.37913 * 120.14330 * 359.76821 * 5 4 3 9 9 C 1.39590 * 120.07067 * 180.02562 * 2 1 3 10 10 C 1.47980 * 120.14513 * 359.97438 * 9 2 1 11 11 C 1.39953 * 119.88486 * 310.00122 * 10 9 2 12 12 C 1.36235 * 120.12447 * 179.97438 * 11 10 9 13 13 C 1.40942 * 119.87537 * 0.02562 * 12 11 10 14 14 C 1.41030 * 120.11557 * 179.71682 * 13 12 11 15 15 H 1.08008 * 119.99915 * 153.61263 * 14 13 12 16 16 C 1.40007 * 120.00403 * 333.61440 * 14 13 12 17 17 N 1.30798 * 119.99935 * 343.92425 * 16 14 13 18 18 Si 1.86797 * 120.00316 * 163.92160 * 16 14 13 19 19 H 1.48508 * 109.46988 * 90.00087 * 18 16 14 20 20 H 1.48505 * 109.47489 * 209.99965 * 18 16 14 21 21 H 1.48503 * 109.47112 * 330.00268 * 18 16 14 22 22 C 1.40915 * 119.76822 * 0.02562 * 13 12 11 23 23 C 1.50697 * 120.06355 * 179.97438 * 22 13 12 24 24 C 1.36271 * 119.87661 * 359.97166 * 22 13 12 25 25 H 1.09001 * 109.46998 * 269.97828 * 1 2 3 26 26 H 1.09003 * 109.47028 * 29.97501 * 1 2 3 27 27 H 1.08993 * 109.47609 * 149.97684 * 1 2 3 28 28 H 1.07991 * 119.92849 * 0.04357 * 3 2 1 29 29 H 1.08003 * 119.85348 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47709 * 209.99958 * 6 5 4 31 31 H 1.09003 * 109.47077 * 330.00091 * 6 5 4 32 32 H 0.96698 * 114.00433 * 180.02562 * 7 6 5 33 33 H 1.07997 * 120.07538 * 180.27446 * 8 5 4 34 34 H 1.08006 * 119.93622 * 359.97438 * 11 10 9 35 35 H 1.08003 * 120.06006 * 180.02562 * 12 11 10 36 36 H 0.97001 * 119.99756 * 179.97438 * 17 16 14 37 37 H 1.09007 * 109.47177 * 89.99646 * 23 22 13 38 38 H 1.08997 * 109.47154 * 209.99539 * 23 22 13 39 39 H 1.08999 * 109.47435 * 330.00111 * 23 22 13 40 40 H 1.07994 * 119.94018 * 180.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5820 1.1955 -0.0005 5 6 4.2817 0.0011 -0.0005 6 6 5.7885 0.0126 -0.0005 7 8 6.2649 0.0161 1.3468 8 6 3.6026 -1.1992 0.0048 9 6 2.2064 -1.2080 -0.0005 10 6 1.4713 -2.4923 -0.0005 11 6 0.4484 -2.7103 0.9293 12 6 -0.2319 -3.8907 0.9334 13 6 0.0966 -4.8935 -0.0009 14 6 -0.6002 -6.1196 0.0026 15 1 -0.6789 -6.6986 -0.9058 16 6 -1.1901 -6.5862 1.1835 17 7 -0.8441 -6.0716 2.3351 18 14 -2.4713 -7.9438 1.1144 19 1 -1.7999 -9.2641 1.2216 20 1 -3.4261 -7.7813 2.2402 21 1 -3.2066 -7.8655 -0.1734 22 6 1.1283 -4.6692 -0.9343 23 6 1.4854 -5.7371 -1.9358 24 6 1.8023 -3.4849 -0.9296 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6585 2.1291 0.0007 29 1 4.1185 2.1328 -0.0001 30 1 6.1587 -0.8746 -0.5143 31 1 6.1451 0.9053 -0.5144 32 1 7.2288 0.0238 1.4232 33 1 4.1496 -2.1304 0.0093 34 1 0.1977 -1.9413 1.6451 35 1 -1.0214 -4.0576 1.6511 36 1 -1.2530 -6.3947 3.1532 37 1 0.8886 -5.6033 -2.8381 38 1 2.5437 -5.6615 -2.1857 39 1 1.2823 -6.7189 -1.5082 40 1 2.5928 -3.3118 -1.6448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242669314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:43 Heat of formation + Delta-G solvation = -28.265212 kcal Electronic energy + Delta-G solvation = -21124.443003 eV Core-core repulsion = 18060.566291 eV Total energy + Delta-G solvation = -3063.876713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.34967 -37.69200 -36.53995 -33.95555 -32.85899 -31.74351 -30.68252 -28.82079 -28.05575 -26.11068 -24.93923 -24.05644 -22.32279 -20.74595 -20.30307 -18.92720 -17.41428 -17.26301 -15.79830 -15.54194 -15.26350 -14.79001 -14.11735 -13.95574 -13.69580 -13.47945 -13.13840 -13.09991 -12.67963 -12.54666 -12.01132 -11.90574 -11.77762 -11.56153 -11.45135 -11.25730 -11.17794 -11.10072 -10.83286 -10.58111 -10.39862 -10.32684 -10.05005 -9.54956 -9.38463 -9.20616 -8.40738 -8.16939 -7.40986 -7.11154 -6.82567 -4.39759 1.64229 1.80200 2.73894 3.02038 3.05429 3.06454 3.15916 3.85820 4.04715 4.52086 4.69115 5.06585 5.14474 5.34861 5.37246 5.47142 5.54006 5.60604 5.84831 5.89484 6.06865 6.12910 6.21931 6.28841 6.34771 6.39636 6.54547 6.64479 6.66178 6.70533 6.83761 6.91633 6.96931 7.02207 7.16569 7.23769 7.38005 7.46616 7.61716 7.62217 7.88682 8.00687 8.07883 8.23383 8.55510 8.80500 8.91494 10.08425 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.004074 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.212471 B = 6871.670782 C = 7230.438727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.124 4.124 5 C -0.103 4.103 6 C 0.121 3.879 7 O -0.567 6.567 8 C -0.101 4.101 9 C 0.010 3.990 10 C -0.196 4.196 11 C -0.077 4.077 12 C -0.168 4.168 13 C 0.122 3.878 14 C -0.451 4.451 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.785 5.785 18 Si 0.907 3.093 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.202 4.202 23 C -0.085 4.085 24 C -0.064 4.064 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.374 0.626 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.282 0.718 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.168 8.423 -3.524 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.103 4.103 6 C 0.044 3.956 7 O -0.372 6.372 8 C -0.119 4.119 9 C 0.010 3.990 10 C -0.197 4.197 11 C -0.096 4.096 12 C -0.187 4.187 13 C 0.119 3.881 14 C -0.480 4.480 15 H 0.100 0.900 16 C -0.144 4.144 17 N -0.409 5.409 18 Si 0.731 3.269 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.203 4.203 23 C -0.141 4.141 24 C -0.082 4.082 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.221 0.779 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.474 8.375 -3.142 10.487 hybrid contribution 0.145 -0.551 0.059 0.573 sum 5.620 7.824 -3.083 10.115 Atomic orbital electron populations 1.20838 0.91399 1.02527 1.01971 1.20084 0.96085 0.92321 1.00089 1.20826 0.93874 0.97178 1.02279 1.20800 0.94048 0.96755 1.02624 1.19406 0.93609 0.93686 1.03598 1.20961 0.91426 0.99778 0.83431 1.86627 1.26102 1.97682 1.26771 1.21170 0.93791 0.96833 1.00150 1.18910 0.92027 0.92820 0.95265 1.17973 1.04088 0.93782 1.03858 1.20459 0.95419 0.96840 0.96835 1.20962 1.02382 0.92544 1.02796 1.17541 0.88641 0.92317 0.89590 1.19621 1.28209 1.04173 0.95991 0.90034 1.25979 0.95900 0.97639 0.94880 1.69816 1.34831 1.37467 0.98821 0.86324 0.80556 0.80729 0.79257 1.19398 1.20016 1.18348 1.19427 1.00950 0.96108 1.03798 1.20401 0.98380 0.98500 0.96847 1.20165 0.98141 0.92857 0.97042 0.91636 0.92804 0.90257 0.86714 0.87040 0.93046 0.93303 0.77950 0.86415 0.89308 0.86510 0.90670 0.94076 0.94405 0.92047 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 8.45 36.00 0.30 -1.50 16 2 C -0.09 -1.52 5.87 -104.22 -0.61 -2.13 16 3 C -0.12 -1.93 9.69 -39.64 -0.38 -2.31 16 4 C -0.12 -1.89 9.70 -39.47 -0.38 -2.27 16 5 C -0.10 -1.66 5.50 -104.68 -0.58 -2.24 16 6 C 0.12 1.54 7.16 36.00 0.26 1.80 16 7 O -0.57 -7.46 13.64 -35.23 -0.48 -7.94 16 8 C -0.10 -1.87 9.16 -39.18 -0.36 -2.22 16 9 C 0.01 0.19 5.47 -104.88 -0.57 -0.38 16 10 C -0.20 -4.35 4.75 -104.63 -0.50 -4.84 16 11 C -0.08 -1.79 7.83 -39.66 -0.31 -2.10 16 12 C -0.17 -4.25 8.61 -39.28 -0.34 -4.59 16 13 C 0.12 3.13 5.56 -106.80 -0.59 2.54 16 14 C -0.45 -11.44 8.09 -37.86 -0.31 -11.75 16 15 H 0.08 1.98 6.88 -52.48 -0.36 1.62 16 16 C 0.08 1.82 5.16 -17.33 -0.09 1.73 16 17 N -0.78 -19.76 10.97 55.55 0.61 -19.15 16 18 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 C -0.20 -4.77 5.90 -104.32 -0.62 -5.39 16 23 C -0.08 -1.72 9.40 36.00 0.34 -1.39 16 24 C -0.06 -1.43 9.08 -39.66 -0.36 -1.79 16 25 H 0.07 1.03 7.49 -51.93 -0.39 0.64 16 26 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.08 1.44 6.46 -51.93 -0.34 1.10 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.37 2.81 9.12 45.56 0.42 3.22 16 33 H 0.12 2.15 8.04 -52.49 -0.42 1.72 16 34 H 0.09 1.92 6.83 -52.48 -0.36 1.56 16 35 H 0.12 3.05 6.23 -52.48 -0.33 2.73 16 36 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.06 1.27 6.77 -51.93 -0.35 0.92 16 40 H 0.09 1.79 8.04 -52.49 -0.42 1.37 16 LS Contribution 331.64 15.07 5.00 5.00 Total: -1.00 -28.61 331.64 -9.63 -38.24 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.63 Total: 9.67 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: -5.10 Total: -38.83 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.61 Total: -19.15 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.48 Total: -7.94 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.61 -9.63 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242669314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.979 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds