Wall clock time and date at job start Tue Mar 31 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47187 * 2 1 4 4 C 1.37780 * 120.04466 * 264.97500 * 3 2 1 5 5 C 1.38945 * 120.09053 * 179.76416 * 4 3 2 6 6 O 1.35810 * 119.90735 * 180.25769 * 5 4 3 7 7 C 1.42904 * 117.00414 * 180.26022 * 6 5 4 8 8 C 1.38979 * 120.18661 * 0.51442 * 5 4 3 9 9 C 1.37742 * 120.09460 * 359.48538 * 8 5 4 10 10 C 1.39722 * 120.05045 * 84.99515 * 3 2 1 11 11 C 1.47771 * 120.08994 * 0.02562 * 10 3 2 12 12 C 1.39241 * 120.33912 * 244.69908 * 11 10 3 13 13 C 1.38032 * 119.97653 * 179.76709 * 12 11 10 14 14 C 1.38959 * 120.68489 * 0.51248 * 13 12 11 15 15 C 1.36412 * 120.69608 * 359.74111 * 14 13 12 16 16 C 1.40758 * 119.99322 * 359.97438 * 15 14 13 17 17 C 1.40845 * 120.33835 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00404 * 152.08218 * 17 16 15 19 19 C 1.40051 * 119.99743 * 332.08235 * 17 16 15 20 20 N 1.30789 * 119.99792 * 160.39974 * 19 17 16 21 21 Si 1.86794 * 120.00011 * 340.40697 * 19 17 16 22 22 H 1.48498 * 109.47444 * 95.50780 * 21 19 17 23 23 H 1.48499 * 109.46977 * 215.50375 * 21 19 17 24 24 H 1.48504 * 109.47120 * 335.50448 * 21 19 17 25 25 H 1.08994 * 109.47286 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47158 * 300.00784 * 1 2 3 27 27 H 1.09006 * 109.46793 * 60.00427 * 1 2 3 28 28 H 1.09002 * 109.47452 * 239.99678 * 2 1 3 29 29 H 1.09002 * 109.47174 * 119.99272 * 2 1 3 30 30 H 1.08007 * 119.95419 * 0.02562 * 4 3 2 31 31 H 1.08999 * 109.46390 * 299.99861 * 7 6 5 32 32 H 1.08997 * 109.46980 * 59.99275 * 7 6 5 33 33 H 1.09000 * 109.47467 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.95581 * 179.76741 * 8 5 4 35 35 H 1.07996 * 120.05118 * 180.23618 * 9 8 5 36 36 H 1.07996 * 120.00739 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.65762 * 180.25264 * 13 12 11 38 38 H 1.07991 * 119.65716 * 179.76419 * 14 13 12 39 39 H 1.08001 * 120.00136 * 179.97438 * 15 14 13 40 40 H 0.96998 * 120.00135 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3608 2.0364 -1.1881 5 6 2.8194 3.3480 -1.1896 6 8 3.1371 3.9529 -2.3634 7 6 3.6078 5.3003 -2.2923 8 6 2.9590 4.0409 0.0070 9 6 2.6329 3.4330 1.1992 10 6 2.1661 2.1157 1.2048 11 6 1.8160 1.4591 2.4815 12 6 0.7561 1.9344 3.2493 13 6 0.4326 1.3125 4.4384 14 6 1.1615 0.2179 4.8874 15 6 2.2084 -0.2674 4.1599 16 6 2.5597 0.3410 2.9402 17 6 3.6390 -0.1545 2.1830 18 1 3.6486 -0.0292 1.1103 19 6 4.6996 -0.8098 2.8210 20 7 5.4917 -1.5928 2.1354 21 14 4.9828 -0.5655 4.6511 22 1 4.3302 -1.6664 5.4043 23 1 6.4411 -0.5708 4.9313 24 1 4.4024 0.7348 5.0726 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 2.2576 1.5001 -2.1199 31 1 2.8427 5.9288 -1.8367 32 1 4.5148 5.3369 -1.6890 33 1 3.8244 5.6630 -3.2972 34 1 3.3194 5.0590 0.0018 35 1 2.7380 3.9734 2.1283 36 1 0.1854 2.7873 2.9130 37 1 -0.3931 1.6829 5.0278 38 1 0.8963 -0.2536 5.8220 39 1 2.7675 -1.1185 4.5198 40 1 6.2261 -2.0469 2.5773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242699014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:42 Heat of formation + Delta-G solvation = -5.062003 kcal Electronic energy + Delta-G solvation = -22051.884561 eV Core-core repulsion = 18989.014015 eV Total energy + Delta-G solvation = -3062.870546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78336 -38.32925 -36.65732 -33.78282 -33.11588 -31.32905 -30.41501 -29.35798 -27.88134 -26.79415 -25.09696 -23.19373 -22.40806 -21.11971 -20.53120 -19.44888 -17.46513 -17.20943 -16.20144 -15.80817 -15.45253 -15.03788 -14.15919 -14.10679 -13.91852 -13.72513 -13.30267 -12.96271 -12.78044 -12.58341 -12.37609 -12.08798 -12.02149 -11.84332 -11.49125 -11.36546 -10.97456 -10.83898 -10.73029 -10.45611 -10.39429 -10.06382 -10.05508 -9.76930 -9.47781 -9.14667 -8.21288 -7.86058 -7.66616 -7.12724 -7.00472 -4.50080 1.93775 1.98972 2.59412 2.70810 3.08437 3.19153 3.29778 3.60419 3.94086 4.34446 4.49022 5.14144 5.26249 5.29206 5.36093 5.48133 5.53715 5.62839 5.76163 5.87234 6.00807 6.03184 6.08374 6.10642 6.14603 6.32642 6.43486 6.50485 6.61333 6.63794 6.77636 6.84090 6.85851 6.97731 7.10909 7.17303 7.32808 7.36749 7.46882 7.66050 7.72888 7.86747 7.91210 8.10409 8.34151 8.63823 8.76053 9.99292 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.006505 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.994669 B = 4303.405651 C = 4805.656989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 C -0.025 4.025 4 C -0.151 4.151 5 C 0.104 3.896 6 O -0.324 6.324 7 C 0.031 3.969 8 C -0.214 4.214 9 C -0.081 4.081 10 C -0.014 4.014 11 C -0.160 4.160 12 C -0.062 4.062 13 C -0.249 4.249 14 C -0.075 4.075 15 C -0.237 4.237 16 C 0.106 3.894 17 C -0.440 4.440 18 H 0.106 0.894 19 C 0.086 3.914 20 N -0.797 5.797 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.244 1.244 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 7.328 -3.375 8.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.138 4.138 3 C -0.025 4.025 4 C -0.170 4.170 5 C 0.060 3.940 6 O -0.238 6.238 7 C -0.064 4.064 8 C -0.233 4.233 9 C -0.100 4.100 10 C -0.014 4.014 11 C -0.162 4.162 12 C -0.080 4.080 13 C -0.269 4.269 14 C -0.093 4.093 15 C -0.256 4.256 16 C 0.103 3.897 17 C -0.468 4.468 18 H 0.123 0.877 19 C -0.134 4.134 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.167 1.167 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.612 7.076 -3.661 8.748 hybrid contribution 0.474 0.287 0.950 1.100 sum -3.138 7.363 -2.711 8.451 Atomic orbital electron populations 1.21661 0.95598 1.00930 1.01391 1.20918 0.95380 0.92671 1.04850 1.19807 0.95773 0.95810 0.91144 1.20134 1.05886 0.92544 0.98402 1.18953 0.98148 0.92761 0.84186 1.85985 1.80783 1.27852 1.29223 1.22928 0.98733 0.81691 1.03073 1.20961 1.09396 1.00469 0.92429 1.21017 0.97583 0.94652 0.96700 1.18521 0.98134 0.92393 0.92396 1.18424 1.02306 0.99222 0.96202 1.20640 0.95589 0.97621 0.94146 1.20238 1.04738 1.02248 0.99643 1.20361 0.95491 0.95868 0.97566 1.20731 1.01752 1.03493 0.99580 1.17591 0.92369 0.88869 0.90840 1.19691 1.01435 1.28112 0.97536 0.87672 1.26233 0.95098 0.91167 1.00943 1.69685 1.13855 1.18809 1.39601 0.86372 0.76331 0.81626 0.82155 1.19668 1.21940 1.16712 0.93071 0.92282 0.93820 0.92212 0.86845 0.86133 0.93110 0.92961 0.88955 0.86475 0.86368 0.88893 0.89049 0.89164 0.88284 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.16 0.37 -1.98 16 2 C -0.10 -1.97 4.85 -27.88 -0.14 -2.11 16 3 C -0.03 -0.50 4.15 -104.23 -0.43 -0.94 16 4 C -0.15 -2.84 9.60 -39.49 -0.38 -3.22 16 5 C 0.10 1.85 6.70 -39.04 -0.26 1.59 16 6 O -0.32 -5.19 10.49 -19.15 -0.20 -5.39 16 7 C 0.03 0.35 9.81 101.05 0.99 1.34 16 8 C -0.21 -3.67 9.02 -39.49 -0.36 -4.03 16 9 C -0.08 -1.55 9.74 -39.20 -0.38 -1.93 16 10 C -0.01 -0.30 4.68 -104.88 -0.49 -0.79 16 11 C -0.16 -3.56 4.51 -104.22 -0.47 -4.03 16 12 C -0.06 -1.27 9.73 -39.28 -0.38 -1.66 16 13 C -0.25 -5.07 10.03 -39.39 -0.40 -5.46 16 14 C -0.07 -1.58 9.96 -39.97 -0.40 -1.98 16 15 C -0.24 -5.53 7.15 -39.29 -0.28 -5.81 16 16 C 0.11 2.57 4.18 -106.56 -0.45 2.12 16 17 C -0.44 -11.27 7.59 -37.92 -0.29 -11.56 16 18 H 0.11 2.81 5.27 -52.49 -0.28 2.54 16 19 C 0.09 2.18 5.40 -17.32 -0.09 2.09 16 20 N -0.80 -20.56 13.93 55.55 0.77 -19.78 16 21 Si 0.91 20.42 24.51 -169.99 -4.17 16.26 16 22 H -0.27 -5.90 6.68 56.52 0.38 -5.52 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.24 -5.66 6.88 56.52 0.39 -5.27 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.06 7.96 -51.93 -0.41 0.65 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.11 2.53 4.23 -51.93 -0.22 2.31 16 30 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 31 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 32 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.12 1.66 6.28 -52.49 -0.33 1.33 16 35 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.10 2.32 4.57 -52.49 -0.24 2.08 16 40 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -27.03 321.25 -7.83 -34.86 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.25 Total: 7.55 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: -3.83 Total: -38.33 kcal Atomic # 7 Polarization: -20.56 SS G_CDS: 0.77 Total: -19.78 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.20 Total: -5.39 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.03 -7.83 -34.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242699014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.799 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds